Information report for AT5G15550
Gene Details
|
|
Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0005052 — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)
Functional Keywords
Literature and News
- Transcriptional profile of the Arabidopsis root quiescent center. DOI: 10.1105/tpc.105.031724 ; PMID: 15937229
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs. DOI: 10.1016/j.ygeno.2012.05.013 ; PMID: 22664253
- Transcriptional regulation and functional involvement of the Arabidopsis pescadillo ortholog AtPES in root development. DOI: 10.1016/j.plantsci.2014.08.012 ; PMID: 25443833
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Gene Resources
- UniProt: A0A178UL95
- EMBL: CACSHJ010000096, LR881470, LUHQ01000005
- AlphaFoldDB: A0A178UL95
- EnsemblPlants: AT5G15550.1, AT5G15550.3
- Gramene: AT5G15550.1, AT5G15550.3
- KEGG: ath:AT5G15550
- Orthologous matrix: DHKYVEF
- ExpressionAtlas: AT5G15550
- InterPro: IPR001680, IPR012972, IPR015943
- PANTHER: PTHR19855, PTHR19855:SF11
- SUPFAM: SSF50978
- PROSITE: PS00678, PS50082, PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A178UL95
- SWISS-MODEL: A0A178UL95
- Conserved Domain Database: cd00200
Sequences
cDNA Sequence
- >AT5G15550.3
CCACACTTCATCGCCTCAAGGCAGAACCCTAATTTATCTCCGCGTCTTCTTTTTGCTCAGTAACAGGCCATCGGAGAAGTTAAGAGGCTAAAATGGATATCGACGGAGAAGATGTATCTAGAAGACTTCACGTTAAGTTCGTGACGAAGCTTGACTCTCCCTTCAAAGTTCCGGTCAACTCCGTCGCAATCCCTTCTAATGTCACTCGTCTCGGCCTCTCTTCCATCGTCAATTCTATTATCGAATCCGAGAATCCAGAGTGGAAAACTGAGCCGTTTGATTTCCTTATTGATGGGGAGCTTATTCGGATGTCACTCGAAGAGTTTCTTCTTGCAAAGGGAATATCGGCGGAGCGTACTCTTGAAATCGAATACATAAGGGCTGTGACACCACGGAAGGAAGAAGAACCCTCCTTGCATGATGATTGGGTCAGTGCGGTTAATGGTTCTTCTCCCAGGTTCATTTTGACTGGGTGCTATGACGGATTAGGAAGGGTATGGAGTTCGGCTGGATCGTGTTCACACATATTAGAAGGCCACTCCGGGGCTATCTCCTCTGTTGCTTTAGTTAATTCCAACGATGCAGAAACTGTTACTGTAGCCACTGCCTCTAAAGATCGGACATTGAGATTGTTTAAGTTTGATCCAGCTGAGTCTGTTGACTCTACTACGAAAGTAAGGGCATACAAGATATTGCGTGGACACAAGGCGTCAGTTCAAAGTGTTTCAGCTCAGAAATCCGGAAACATGGTTTGCTCGAGTTCATGGGATTGCACCATCAATTTATGGAACACAAATGAATCTACTTCAGAAGGGGAGTCAGTATCAGTAAAGAAAAGAAAAGGAAATAATCAGGCCGAGGAATCTCAGTCAGAGGGAGAGGCAGTGACTTCTTTGGTTGGACACACACAGTGTGTATCATCAGTTGTTTGGCCAGAGCATGATGTAATTTATTCCTCTTCGTGGGACCATTCCGTTAGGAGATGGGATGTTGAGACAGGGAAAGATTCTTTGAACTTGTTCTGTGGAAAAGCTCTCAACACGGTAGATGTTGGTGGTGAAAGTTCTGCCCTTATAGCTGCTGGTGGCTCAGATCCAATCCTTAGAGTATGGGATCCTCGTAAGCCAGGAACATCCGCTCCCGTGTTTCAGTTCTCTTCACACTCATCATGGATTTCCGCCTGTAAGTGGCACAAAAGCTCTTGGTTTCACTTGCTCTCCGCTTCCTACGACGGCAAAATCATGCTCTGGGATCTCAGAACCGCTTGGCCTTTGTCAGTAATTGATACACACAATGACAAGGTTTTATCTGCTGACTGGTGGAAAGGAGAGAGTGTAGTCAGCGGAGGAGCAGACTCTAACTTGCGAATTTCTTCCGGAATCGCAATTTCTTAAAAGGTATGAAATCCGAAATCTTTTGACCATTTCTTTTCTTACATGAAATGTGGAGCAATGAAACATTTACTCAGTTCCGTACGATGTCTGAGAAAATTCGATTCTTTTCTTACTCAGAAACACAAACGATTCATGATCCTGGAATGAGACTGTTGTAAGTTCTGCTGAATAGAGCTTATTGTCTTCAAGGTTGTATACTCTTCATATTCCGAAATGTTAAATCTTAATTATACTTTTGGTGGGAAGCAAATTTTGTTTTTATTGTCTGATAACGACCATTTAAAATCAAGAGCTATTTACTTATGTTGTCTGCCGTGCTAAATACTAAATTAGTTTGCTTTTCTTTGGCCGAAAAATAAAATAGCATCAACTACAAAAC - >AT5G15550.1
CCACACTTCATCGCCTCAAGGCAGAACCCTAATTTATCTCCGCGTCTTCTTTTTGCTCAGTAACAGGCCATCGGAGAAGTTAAGAGGCTAAAATGGATATCGACGGAGAAGATGTATCTAGAAGACTTCACGTTAAGTTCGTGACGAAGCTTGACTCTCCCTTCAAAGTTCCGGTCAACTCCGTCGCAATCCCTTCTAATGTCACTCGTCTCGGCCTCTCTTCCATCGTCAATTCTATTATCGAATCCGAGAATCCAGAGTGGAAAACTGAGCCGTTTGATTTCCTTATTGATGGGGAGCTTATTCGGATGTCACTCGAAGAGTTTCTTCTTGCAAAGGGAATATCGGCGGAGCGTACTCTTGAAATCGAATACATAAGGGCTGTGACACCACGGAAGGAAGAAGAACCCTCCTTGCATGATGATTGGGTCAGTGCGGTTAATGGTTCTTCTCCCAGGTTCATTTTGACTGGGTGCTATGACGGATTAGGAAGGGTATGGAGTTCGGCTGGATCGTGTTCACACATATTAGAAGGCCACTCCGGGGCTATCTCCTCTGTTGCTTTAGTTAATTCCAACGATGCAGAAACTGTTACTGTAGCCACTGCCTCTAAAGATCGGACATTGAGATTGTTTAAGTTTGATCCAGCTGAGTCTGTTGACTCTACTACGAAAGTAAGGGCATACAAGATATTGCGTGGACACAAGGCGTCAGTTCAAAGTGTTTCAGCTCAGAAATCCGGAAACATGGTTTGCTCGAGTTCATGGGATTGCACCATCAATTTATGGAACACAAATGAATCTACTTCAGAAGGGGAGTCAGTATCAGTAAAGAAAAGAAAAGGAAATAATCAGGCCGAGGAATCTCAGTCAGAGGGAGAGGCAGTGACTTCTTTGGTTGGACACACACAGTGTGTATCATCAGTTGTTTGGCCAGAGCATGATGTAATTTATTCCTCTTCGTGGGACCATTCCGTTAGGAGATGGGATGTTGAGACAGGGAAAGATTCTTTGAACTTGTTCTGTGGAAAAGCTCTCAACACGGTAGATGTTGGTGGTGAAAGTTCTGCCCTTATAGCTGCTGGTGGCTCAGATCCAATCCTTAGAGTATGGGATCCTCGTAAGCCAGGAACATCCGCTCCCGTGTTTCAGTTCTCTTCACACTCATCATGGATTTCCGCCTGTAAGTGGCACAAAAGCTCTTGGTTTCACTTGCTCTCCGCTTCCTACGACGGCAAAATCATGCTCTGGGATCTCAGAACCGCTTGGCCTTTGTCAGTAATTGATACACACAATGACAAGGTTTTATCTGCTGACTGGTGGAAAGGAGAGAGTGTAGTCAGCGGAGGAGCAGACTCTAACTTGCGAATTTCTTCCGGAATCGCAATTTCTTAAAAGGTATGAAATCCGAAATCTTTTGACCATTTCTTTTCTTACATGAAATGTGGAGCAATGAAACATTTACTCAGTTCCGTACGATGTCTGAGAAAATTCGATTCTTTTCTTACTCAGAAACACAAACGATTCATGATCCTGGAATGAGACTGTTGTAAGTTCTGCTGAATAGAGCTTATTGTCTTCAAGGTTGTATACTCTTCATATTCCGAAATGTTAAATCTTAATTATACTTTTGGTGGGAAGCAAATTTTGTTTTTATTGTCTGATAACGACCATTTAAAATCAAGAGCTATTTACTTATGTTGTCTGCCGTGCTAAATACTAAATTAGTTTGCTTTTCTTTGGCCGAAAAATAAAATAGCATCAACTACAAAAC - >AT5G15550.2
CCACACTTCATCGCCTCAAGGCAGAACCCTAATTTATCTCCGCGTCTTCTTTTTGCTCAGTAACAGGCCATCGGAGAAGTTAAGAGGCTAAAATGGATATCGACGGAGAAGATGTATCTAGAAGACTTCACGTTAAGTTCGTGACGAAGCTTGACTCTCCCTTCAAAGTTCCGGTCAACTCCGTCGCAATCCCTTCTAATGTCACTCGTCTCGGCCTCTCTTCCATCGTCAATTCTATTATCGAATCCGAGAATCCAGAGTGGAAAACTGAGCCGTTTGATTTCCTTATTGATGGGGAGCTTATTCGGATGTCACTCGAAGAGTTTCTTCTTGCAAAGGGAATATCGGCGGAGCGTACTCTTGAAATCGAATACATAAGGGCTGTGACACCACGGAAGGAAGAAGAACCCTCCTTGCATGATGATTGGGTCAGTGCGGTTAATGGTTCTTCTCCCAGGTTCATTTTGACTGGGTGCTATGACGGATTAGGAAGGGTATGGAGTTCGGCTGGATCGTGTTCACACATATTAGAAGGCCACTCCGGGGCTATCTCCTCTGTTGCTTTAGTTAATTCCAACGATGCAGAAACTGTTACTGTAGCCACTGCCTCTAAAGATCGGACATTGAGATTGTTTAAGTTTGATCCAGCTGAGTCTGTTGACTCTACTACGAAAGTAAGGGCATACAAGATATTGCGTGGACACAAGGCGTCAGTTCAAAGTGTTTCAGCTCAGAAATCCGGAAACATGGTTTGCTCGAGTTCATGGGATTGCACCATCAATTTATGGAACACAAATGAATCTACTTCAGAAGGGGAGTCAGTATCAGTAAAGAAAAGAAAAGGAAATAATCAGGCCGAGGAATCTCAGTCAGAGGGAGAGGCAGTGACTTCTTTGGTTGGACACACACAGTGTGTATCATCAGTTGTTTGGCCAGAGCATGATGTAATTTATTCCTCTTCGTGGGACCATTCCGTTAGGAGATGGGATGTTGAGACAGGGAAAGATTCTTTGAACTTGTTCTGTGGAAAAGCTCTCAACACGGTAGATGTTGGTGGTGAAAGTTCTGCCCTTATAGCTGCTGGTGGCTCAGATCCAATCCTTAGAGTATGGGATCCTCGTAAGCCAGGAACATCCGCTCCCGTGTTTCAGTTCTCTTCACACTCATCATGGATTTCCGCCTGTAAGTGGCACAAAAGCTCTTGGTTTCACTTGCTCTCCGCTTCCTACGACGGCAAAATCATGCTCTGGGATCTCAGAACCGCTTGGCCTTTGTCAGTAATTGATACACACAATGACAAGGTTTTATCTGCTGACTGGTGGAAAGGAGAGAGTGTAGTCAGCGGAGGAGCAGACTCTAACTTGCGAATTTCTTCCGGAATCGCAATTTCTTAAAAGGTATGAAATCCGAAATCTTTTGACCATTTCTTTTCTTACATGAAATGTGGAGCAATGAAACATTTACTCAGTTCCGTACGATGTCTGAGAAAATTCGATTCTTTTCTTACTCAGAAACACAAACGATTCATGATCCTGGAATGAGACTGTTGTAAGTTCTGCTGAATAGAGCTTATTGTCTTCAAGGTTGTATACTCTTCATATTCCGAAATGTTAAATCTTAATTATACTTTTGGTGGGAAGCAAATTTTGTTTTTATTGTCTGATAACGACCATTTAAAATCAAGAGCTATTTACTTATGTTGTCTGCCGTGCTAAATACTAAATTAGTTTGCTTTTCTTTGGCCGAAAAATAAAATAGCATCAACTACAAAAC
CDS Sequence
Protein Sequence