Information report for AT5G15020
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0016580 — located in — Sin3 complex
- GO:0000122 — involved in — negative regulation of transcription by RNA polymerase II
- GO:0005634 — located in — nucleus
- GO:0000118 — part of — histone deacetylase complex
- GO:0000785 — part of — chromatin
- GO:0003714 — enables — transcription corepressor activity
Functional Keywords
Literature and News
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. DOI: 10.1016/j.jmb.2009.11.065 ; PMID: 19962994
- Arabidopsis seed germination speed is controlled by SNL histone deacetylase-binding factor-mediated regulation of AUX1. DOI: 10.1038/ncomms13412 ; PMID: 27834370
- The HDA19 histone deacetylase complex is involved in the regulation of flowering time in a photoperiod-dependent manner. DOI: 10.1111/tpj.14229 ; PMID: 30828924
- Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. DOI: 10.1016/j.jgg.2021.04.004 ; PMID: 34144927
- Interaction Analysis between the Arabidopsis Transcription Repressor VAL1 and Transcription Coregulators SIN3-LIKEs (SNLs). DOI: 10.3390/ijms23136987 ; PMID: 35805982
Gene Resources
- UniProt: F4K8B0
- EMBL: CP002688
- EnsemblPlants: AT5G15020.2
- Gramene: AT5G15020.2
- Orthologous matrix: EWTHARH
- ExpressionAtlas: AT5G15020
- InterPro: IPR003822, IPR013194, IPR031693
- PANTHER: PTHR12346, PTHR12346:SF8
- SUPFAM: SSF47762
- PROSITE: PS51477
- Gene3D: 1.20.1160.11
- SWISS-MODEL: F4K8B0
Sequences
cDNA Sequence
- >AT5G15020.2
GCCGGGAGAGACCTCATAGGCAAATTCCGTCCTCGTTTCTTCTTCTTCTTCATTATTCGAAAATTACTTTCTCTCTCTTGCTTCTCAGTCGTAGCAACTCCAATTCAAAACATTTCTCTCTCATTTGTTTTTTAATCTTCTTCTGAATTCCACTCTGTTCTCATCGGAATTGTTCTTGGGGTTTGGCACAATTCGGGAAATTTGAAGTTTTCGCCGGAATTTGATCGGAAGTGTTTCTTATCGATTCCGCTCTTACTCGAGAGATCTGATTAATCTCTTCCCGGAGTTATATCTCTGGGAAATCTGGAGAACGAGAAAAGCAGCAATGAAGCGAATTAGGGATGATATTTACGCAACCGGGTCTCAATTTAAACGTCCTTTGGGCTCTTCTCGTGGCGAATCATATGAGCAATCTCCAATCACTGGAGGAGGGAGCATTGGTGAAGGGGGAATCAACACTCAGAAATTGACTACCGATGATGCTTTGACCTACTTAAAGGAAGTAAAGGAGATGTTTCAAGATCAGCGAGACAAATATGATATGTTCCTTGAGGTTATGAAAGACTTTAAGGCACAAAAGACTGATACATCTGGTGTGATTTCACGAGTGAAGGAGCTGTTTAAGGGGCATAACAATTTGATTTTCGGGTTTAACACCTTTTTGCCTAAGGGGTTTGAAATAACGCTTGATGATGTAGAAGCTCCTTCAAAGAAAACTGTTGAATTTGAAGAAGCCATAAGCTTTGTTAATAAAATTAAGACACGGTTCCAGCACAATGAACTTGTCTATAAGTCGTTTCTGGAAATCTTAAATATGTATCGGAAGGATAATAAGGACATCACTGAGGTTTACAATGAGGTGTCTACTCTTTTTGAGGACCACTCGGATTTGCTTGAAGAGTTCACTAGGTTTTTACCAGACTCGTTGGCGCCTCATACAGAAGCCCAGTTACTTCGTAGTCAAGCCCAACGGTATGATGACCGGGGATCAGGCCCTCCTCTTGTGCGTCGAATGTTTATGGAGAAGGATCGCCGACGAGAAAGAACTGTTGCTTCTCGGGGTGATCGTGATCACAGTGTTGACCGTTCTGACCTTAATGATGATAAATCAATGGTTAAGATGCACAGAGATCAGAGGAAACGTGTTGATAAGGATAATAGAGAAAGGAGAAGCCGTGATTTGGAAGATGGAGAAGCAGAGCAAGATAACTTGCAACATTTTTCAGAGAAAAGGAAGTCCTCGAGAAGAATGGAGGGGTTTGAAGCTTATTCTGGTCCTGCTTCACATTCTGAGAAAAACAATCTAAAAAGCATGTACAACCAAGCATTTTTGTTTTGTGAGAAAGTCAAGGAGAGATTATGCAGCCAAGATGATTATCAAGCATTCTTGAAGTGTCTCAATATGTTTAGCAATGGAATTATCCAAAGGAAAGATCTGCAGAATTTGGTTTCCGATGTGCTTGGAAAATTCCCTGATCTCATGGATGAGTTCAATCAGTTCTTTGAGCGTTGTGAGAGTATTGATGGTTTCCAGCACCTTGCTGGTGTTATGAGCAAAAAATCACTTGGTAGTGAAGAAAATTTATCTAGATCAGTGAAGGGGGAGGAAAAAGATAGAGAACACAAACGTGACGTTGAGGCTGCTAAGGAAAAAGAGCGATCCAAGGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGTGAGCGTTGCACTCCTAGCTACCGGCTTCTCCCTCCAGATTATCCAATCCCGTCTGTGCGCCACAGACAGAAATCAGGAGCTGCTGTGTTAAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAAGACTACTCTTTTAAGCACATGCGCAGGAACCAATATGAAGAAAGCTTGTTTAGATGTGAAGATGATAGATTTGAGTTGGACATGCTGTTGGAATCTGTGGGATCTGCTGCCAAAAGTGCAGAAGAATTGTTGAATATTATCATTGATAAGAAAATAAGTTTTGAGGGCTCCTTCCGGATTGAAGACCATTTCACAGCACTAAATCTAAGGTGTATAGAGAGACTTTATGGAGACCATGGTCTTGACGTGACAGACTTAATACGTAAGAATCCAGCTGCTGCACTTCCTGTAATTCTAACTCGATTGAAGCAGAAACAAGATGAATGGACAAAATGCCGTGAAGGTTTTAATGTGGTCTGGGCGGATGTGTATGCGAAAAACCATTACAAATCACTTGATCACCGCAGCTTCTATTTTAAGCAGCAAGATTCTAAGAATTTGAGTGCAAAAGCGCTGGTGTCTGAAGTCAAGGACTTGAAAGAGAAGTCTCAGAAAGAAGACGATGTTGTTCTGTCTATTTCTGCTGGTTACAGGCAACCGATAATTCCTCACCTCGAGTATGACTATCTCGACAGAGCTATTCATGAAGACCTGTTCAAACTAGTCCAATTTTCTTGTGAGGAGATATGTTCTACAAAAGAGCAGACTGGTAAAGTTCTGAAGCTCTGGGCTAATTTTTTGGAGCTGATGCTTGATGTTGCACCCAGGGCCAAGGGGTCAGATTCTGTTGAAGATGTTGTAGAAACCCAGCATCAGCGTGCATTTACCAGTGGGGAGGCTAATGAGAGTTCTGATGCGATAAGTTTGGTTTCTAGGCAACTAAAATTTGCTACCAATGGAGATGTGCATGCTTCATCTGGGGTCTCCAAGCATGGTGAGACTGGTTTGTTGAATAGGGATTCTTCAGGGAAAGAAAATTTGAAGGATGGTGATCTTGCTAATAAAGATGTTGCCACCTGTGCTGAAAAACCCCAAAAAGATCAAGAAATTGGAAATGGAGCTGCTAAAAGATCTGGAGATGTTGATGAAAGAGTGGCCACTTCAAGTTCGTCTTTCCCAAGTGGGGTCGAAAACAATAATGGTAAAGTAGGAAGCAGAGATTCGTCAGGTTCACGGGGCATATTATCCAAACCAAGTGAAGCTATAGATAAAGTTGATAGCATTCAACATACGCAGGGAGTTGATATAGGCCGAATTATAGTCTTAGGAAATGGTCTGCAGTCAGATACTTCTAAAGCCAACAGTAATTATGATGAATCGGGTGGTCCATCCAAAATTGAGAAGGAGGAAGGTGAATTATCACCTGTTGGTGATTCCGAAGACAACTTTGTTGTTTACGAAGATCGTGAGTTGAAGGCTACTGCGAAAACAGAACATTCAGTTGAAGCTGAAGGAGAAAATGATGAGGACGCTGACGATGAGGATGGTGATGATGCTTCCGAAGCTGGTGAGGATGCTTCGGGAACTGAATCTATTGGTGACGAATGTTCACAGGACGATAATGGCGTTGAGGAAGAGGGTGAGCATGATGAGATTGATGGTAAAGCTGAAAGTGAAGGAGAGGCAGAGGGAATGGAGTCACATCTTATAGAAGACAAAGGGTTGTTTCCGTCATCAGAACGTGTTCTATTATCAGTTAAGCCTCTGTCAAAACATATAGCTGCAGCGGCTTTGGTTGATGAGAAAAAGAAGGATTCCAGAGTATTCTATGGGAATGACGACTTTTATGTCCTTTTCAGGCTTCATCGAATCCTGTACGAGAGAATTCTGTCTGCGAAAACATATTGCTCCGGCAGTGAAATGAAACTGAGAAACACTAAAGATACTTGTTCACCAGATCCTTATGCAAGGTTTATGAATGCTCTGTTTAGTCTGCTTAATGGCTCAGCTGAAAATTCCAAGTTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCATATGTTTTATTCACTTTGGAAAAACTGATATACAAATTGGTTAAACAGCTTCAAGCTGTTGTAGCTGACGACATGGACAATAAGCTTCTTCAGTTGTATGAGTATGAGAATTCCCGGAGACCTGGGAGGGTATTTGACTCGGTATATTATGAAAACGCTAGGATCCTCCTTCATGAAGAAAATATTTATCGGTTAGAATGTTCTTCCTCTCCATCTCGTTTGTCAATCCAGCTTATGGATAACATAATTGAAAAGCCCGACGCTTATGCAGTCTCCATGGAGCCCACATTTACGAGTTATTTGCAAAATGAGTTTCTCTCCAACTCATCAGGGAAGAAAGAGCTACAGGACATTGTGCTACAAAGGAACATGCGTGGATACAATGGTCTGGATGATCTTGCAGTAGCTTGCAAGGCCATGGAAGGTGTACAAGTAATTAATGGCCTTGAATGCAAGATGTCTTGCTCTTCCTACAAGATTTCGTATGTTTTGGACACAGAGGATTTCTTCCACAGGAAGAAGAAACAGAAGAAGAGCAACAACTTGTCACTGGCTAAATTATCACAGAATAGAATAGCAAGATTCCACAAGTTTCTCTCAGCTTCAAGATGACAGCAAACAAGAACACGCAAAACTTCTCTTTTACTTCAACACACAAAGGAAGGTTAGAGACCAAGTTCTCTCTGCAACCTTCCCTATCCTTTGCACAGTAGTGTGTATTTTCTAATTTTAATCTTGATTTTAGTTTTTTTTTTTTTTAAATGTATGTTTGTAAATAATGGAAACACATACGTGGTTGGTTATGCTCTCCGTTTGTATCTCTACATAGACAGGTTCAAAAGAGAGATTCTTCTTCGTCTTATATAAATATGATTTAAAAATATTTTATCTAA - >AT5G15020.1
GCCGGGAGAGACCTCATAGGCAAATTCCGTCCTCGTTTCTTCTTCTTCTTCATTATTCGAAAATTACTTTCTCTCTCTTGCTTCTCAGTCGTAGCAACTCCAATTCAAAACATTTCTCTCTCATTTGTTTTTTAATCTTCTTCTGAATTCCACTCTGTTCTCATCGGAATTGTTCTTGGGGTTTGGCACAATTCGGGAAATTTGAAGTTTTCGCCGGAATTTGATCGGAAGTGTTTCTTATCGATTCCGCTCTTACTCGAGAGATCTGATTAATCTCTTCCCGGAGTTATATCTCTGGGAAATCTGGAGAACGAGAAAAGCAGCAATGAAGCGAATTAGGGATGATATTTACGCAACCGGGTCTCAATTTAAACGTCCTTTGGGCTCTTCTCGTGGCGAATCATATGAGCAATCTCCAATCACTGGAGGAGGGAGCATTGGTGAAGGGGGAATCAACACTCAGAAATTGACTACCGATGATGCTTTGACCTACTTAAAGGAAGTAAAGGAGATGTTTCAAGATCAGCGAGACAAATATGATATGTTCCTTGAGGTTATGAAAGACTTTAAGGCACAAAAGACTGATACATCTGGTGTGATTTCACGAGTGAAGGAGCTGTTTAAGGGGCATAACAATTTGATTTTCGGGTTTAACACCTTTTTGCCTAAGGGGTTTGAAATAACGCTTGATGATGTAGAAGCTCCTTCAAAGAAAACTGTTGAATTTGAAGAAGCCATAAGCTTTGTTAATAAAATTAAGACACGGTTCCAGCACAATGAACTTGTCTATAAGTCGTTTCTGGAAATCTTAAATATGTATCGGAAGGATAATAAGGACATCACTGAGGTTTACAATGAGGTGTCTACTCTTTTTGAGGACCACTCGGATTTGCTTGAAGAGTTCACTAGGTTTTTACCAGACTCGTTGGCGCCTCATACAGAAGCCCAGTTACTTCGTAGTCAAGCCCAACGGTATGATGACCGGGGATCAGGCCCTCCTCTTGTGCGTCGAATGTTTATGGAGAAGGATCGCCGACGAGAAAGAACTGTTGCTTCTCGGGGTGATCGTGATCACAGTGTTGACCGTTCTGACCTTAATGATGATAAATCAATGGTTAAGATGCACAGAGATCAGAGGAAACGTGTTGATAAGGATAATAGAGAAAGGAGAAGCCGTGATTTGGAAGATGGAGAAGCAGAGCAAGATAACTTGCAACATTTTTCAGAGAAAAGGAAGTCCTCGAGAAGAATGGAGGGGTTTGAAGCTTATTCTGGTCCTGCTTCACATTCTGAGAAAAACAATCTAAAAAGCATGTACAACCAAGCATTTTTGTTTTGTGAGAAAGTCAAGGAGAGATTATGCAGCCAAGATGATTATCAAGCATTCTTGAAGTGTCTCAATATGTTTAGCAATGGAATTATCCAAAGGAAAGATCTGCAGAATTTGGTTTCCGATGTGCTTGGAAAATTCCCTGATCTCATGGATGAGTTCAATCAGTTCTTTGAGCGTTGTGAGAGTATTGATGGTTTCCAGCACCTTGCTGGTGTTATGAGCAAAAAATCACTTGGTAGTGAAGAAAATTTATCTAGATCAGTGAAGGGGGAGGAAAAAGATAGAGAACACAAACGTGACGTTGAGGCTGCTAAGGAAAAAGAGCGATCCAAGGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGTGAGCGTTGCACTCCTAGCTACCGGCTTCTCCCTCCAGATTATCCAATCCCGTCTGTGCGCCACAGACAGAAATCAGGAGCTGCTGTGTTAAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAAGACTACTCTTTTAAGCACATGCGCAGGAACCAATATGAAGAAAGCTTGTTTAGATGTGAAGATGATAGATTTGAGTTGGACATGCTGTTGGAATCTGTGGGATCTGCTGCCAAAAGTGCAGAAGAATTGTTGAATATTATCATTGATAAGAAAATAAGTTTTGAGGGCTCCTTCCGGATTGAAGACCATTTCACAGCACTAAATCTAAGGTGTATAGAGAGACTTTATGGAGACCATGGTCTTGACGTGACAGACTTAATACGTAAGAATCCAGCTGCTGCACTTCCTGTAATTCTAACTCGATTGAAGCAGAAACAAGATGAATGGACAAAATGCCGTGAAGGTTTTAATGTGGTCTGGGCGGATGTGTATGCGAAAAACCATTACAAATCACTTGATCACCGCAGCTTCTATTTTAAGCAGCAAGATTCTAAGAATTTGAGTGCAAAAGCGCTGGTGTCTGAAGTCAAGGACTTGAAAGAGAAGTCTCAGAAAGAAGACGATGTTGTTCTGTCTATTTCTGCTGGTTACAGGCAACCGATAATTCCTCACCTCGAGTATGACTATCTCGACAGAGCTATTCATGAAGACCTGTTCAAACTAGTCCAATTTTCTTGTGAGGAGATATGTTCTACAAAAGAGCAGACTGGTAAAGTTCTGAAGCTCTGGGCTAATTTTTTGGAGCTGATGCTTGATGTTGCACCCAGGGCCAAGGGGTCAGATTCTGTTGAAGATGTTGTAGAAACCCAGCATCAGCGTGCATTTACCAGTGGGGAGGCTAATGAGAGTTCTGATGCGATAAGTTTGGTTTCTAGGCAACTAAAATTTGCTACCAATGGAGATGTGCATGCTTCATCTGGGGTCTCCAAGCATGGTGAGACTGGTTTGTTGAATAGGGATTCTTCAGGGAAAGAAAATTTGAAGGATGGTGATCTTGCTAATAAAGATGTTGCCACCTGTGCTGAAAAACCCCAAAAAGATCAAGAAATTGGAAATGGAGCTGCTAAAAGATCTGGAGATGTTGATGAAAGAGTGGCCACTTCAAGTTCGTCTTTCCCAAGTGGGGTCGAAAACAATAATGGTAAAGTAGGAAGCAGAGATTCGTCAGGTTCACGGGGCATATTATCCAAACCAAGTGAAGCTATAGATAAAGTTGATAGCATTCAACATACGCAGGGAGTTGATATAGGCCGAATTATAGTCTTAGGAAATGGTCTGCAGTCAGATACTTCTAAAGCCAACAGTAATTATGATGAATCGGGTGGTCCATCCAAAATTGAGAAGGAGGAAGGTGAATTATCACCTGTTGGTGATTCCGAAGACAACTTTGTTGTTTACGAAGATCGTGAGTTGAAGGCTACTGCGAAAACAGAACATTCAGTTGAAGCTGAAGGAGAAAATGATGAGGACGCTGACGATGAGGATGGTGATGATGCTTCCGAAGCTGGTGAGGATGCTTCGGGAACTGAATCTATTGGTGACGAATGTTCACAGGACGATAATGGCGTTGAGGAAGAGGGTGAGCATGATGAGATTGATGGTAAAGCTGAAAGTGAAGGAGAGGCAGAGGGAATGGAGTCACATCTTATAGAAGACAAAGGGTTGTTTCCGTCATCAGAACGTGTTCTATTATCAGTTAAGCCTCTGTCAAAACATATAGCTGCAGCGGCTTTGGTTGATGAGAAAAAGAAGGATTCCAGAGTATTCTATGGGAATGACGACTTTTATGTCCTTTTCAGGCTTCATCGAATCCTGTACGAGAGAATTCTGTCTGCGAAAACATATTGCTCCGGCAGTGAAATGAAACTGAGAAACACTAAAGATACTTGTTCACCAGATCCTTATGCAAGGTTTATGAATGCTCTGTTTAGTCTGCTTAATGGCTCAGCTGAAAATTCCAAGTTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCATATGTTTTATTCACTTTGGAAAAACTGATATACAAATTGGTTAAACAGCTTCAAGCTGTTGTAGCTGACGACATGGACAATAAGCTTCTTCAGTTGTATGAGTATGAGAATTCCCGGAGACCTGGGAGGGTATTTGACTCGGTATATTATGAAAACGCTAGGATCCTCCTTCATGAAGAAAATATTTATCGGTTAGAATGTTCTTCCTCTCCATCTCGTTTGTCAATCCAGCTTATGGATAACATAATTGAAAAGCCCGACGCTTATGCAGTCTCCATGGAGCCCACATTTACGAGTTATTTGCAAAATGAGTTTCTCTCCAACTCATCAGGGAAGAAAGAGCTACAGGACATTGTGCTACAAAGGAACATGCGTGGATACAATGGTCTGGATGATCTTGCAGTAGCTTGCAAGGCCATGGAAGGTGTACAAGTAATTAATGGCCTTGAATGCAAGATGTCTTGCTCTTCCTACAAGATTTCGTATGTTTTGGACACAGAGGATTTCTTCCACAGGAAGAAGAAACAGAAGAAGAGCAACAACTTGTCACTGGCTAAATTATCACAGAATAGAATAGCAAGATTCCACAAGTTTCTCTCAGCTTCAAGATGACAGCAAACAAGAACACGCAAAACTTCTCTTTTACTTCAACACACAAAGGAAGGTTAGAGACCAAGTTCTCTCTGCAACCTTCCCTATCCTTTGCACAGTAGTGTGTATTTTCTAATTTTAATCTTGATTTTAGTTTTTTTTTTTTTTAAATGTATGTTTGTAAATAATGGAAACACATACGTGGTTGGTTATGCTCTCCGTTTGTATCTCTACATAGACAGGTTCAAAAGAGAGATTCTTCTTCGTCTTATATAAATATGATTTAAAAATATTTTATCTAA
CDS Sequence
Protein Sequence