Information report for AT5G14170
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0010224 — acts upstream of or within — response to UV-B
- GO:0005515 — enables — protein binding
- GO:0010468 — acts upstream of or within — regulation of gene expression
- GO:0009909 — acts upstream of or within — regulation of flower development
- GO:0006281 — acts upstream of or within — DNA repair
- GO:0016514 — part of — SWI/SNF complex
- GO:0006357 — involved in — regulation of transcription by RNA polymerase II
- GO:0005634 — is active in — nucleus
- GO:0005634 — located in — nucleus
- GO:0048364 — acts upstream of or within — root development
- GO:2000024 — acts upstream of or within — regulation of leaf development
Functional Keywords
Literature and News
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes. DOI: 10.1371/journal.pone.0007386 ; PMID: 19812694
- Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA. DOI: 10.1104/pp.111.191452 ; PMID: 22170978
- Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. DOI: 10.1111/ppl.12013 ; PMID: 23517122
- SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. DOI: 10.1105/tpc.15.00233 ; PMID: 26106148
- A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture. DOI: 10.1371/journal.pone.0138276 ; PMID: 26457678
- The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility. DOI: 10.1186/s13059-017-1246-7 ; PMID: 28619072
- Genome-wide occupancy of Arabidopsis SWI/SNF chromatin remodeler SPLAYED provides insights into its interplay with its close homolog BRAHMA and Polycomb proteins. DOI: 10.1111/tpj.15159 ; PMID: 33432631
- Bromodomain-containing proteins BRD1, BRD2, and BRD13 are core subunits of SWI/SNF complexes and vital for their genomic targeting in Arabidopsis. DOI: 10.1016/j.molp.2021.03.018 ; PMID: 33771698
- The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis. DOI: 10.1093/nar/gkac826 ; PMID: 36189880
- Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes. DOI: 10.1038/s41477-022-01282-z ; PMID: 36471048
- RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation. DOI: 10.1073/pnas.0706986104 ; PMID: 17827277
Gene Resources
- UniProt: A0A178UDN5
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UDN5
- EnsemblPlants: AT5G14170.1
- Gramene: AT5G14170.1
- KEGG: ath:AT5G14170
- Orthologous matrix: NFRCNEP
- ExpressionAtlas: AT5G14170
- InterPro: IPR003121, IPR019835, IPR036885
- PANTHER: PTHR13844
- SUPFAM: SSF47592
- PROSITE: PS51925
- Gene3D: 1.10.245.10
- OrthoDB: A0A178UDN5
- SWISS-MODEL: A0A178UDN5
- Conserved Domain Database: cd10568
Sequences
cDNA Sequence
- >AT5G14170.1
CCGGACAGTAAAATAGATAGCTCCGGTGGGCATTTGTTTTTGTTTTCTCTCTCGAGTCTCGACAACTGAGAAGCAACGGAACACCGGTGAATCCCGGAAAGAAGGTGAATCAAAAAAGCAGGCTGATAGGTTTATATAGCAATGTCTGGTAACAACAACAATCCACAAAAGCCTCAAGGCTCTGCGCCTTTGCCTTTTGGGAATCCTGGGATGGCCTCTGCATCTGTTCCTGGAAACCAAGGTTTTGCTCAGTCTCATATGGCAGCTAACTTTCAAGCTCAGTTTCAGTTCTCTCAAGCTCAGGCCCTAGCCCATGCTCAAGCACAGTCTAAAGTTCAAGCACAACTGCAAGCTCAGTTACAAGCTCAAGGCATGACGATGAACCAAGCACAAGGTTCTCCGGGGATTGGTGGCTTGGGTCCTTCTTCTCCTTCTTTGACGACTCCTGGAAGTTTAAACATGAAGAGATTCCAGCAGAAACCGCCGATGCGACCTCCTGGTGCTCCTGCGAGTAACAACACTATCTCCCCAATGAGAACAATGGAGTTAACTCCTGCTGCTCGGAAAAAGAAACAAAAGCTTCCAGAAAAGTCATTGCAGGAGCGGGTGGCTGCAATCTTGCCAGAGTCTGCCTTATACACACAACTTCTGGAGTTTGAGTCTCGGGTTGATGCTGCGTTAACTAGAAAGAAAGTTGACATCCAGGAAGCCCTTAAAAACCCTCCCTGCATACAGAAGACTCTTAGGATCTACGTTTTCAACTCGTTTGCTAACCAAAACAACACGATCCCTGGGAATCCTAATGCTGACCCGCCAACATGGACTCTTAAAATTATTGGTAGGATACTGGAAGATGGGGTGGATCCCGACCAGCCAGGGTTTGTTCAGAAAGCAAACCCATTGCATCCCAAATTCTCGTCTTTCTTCAAAAGGGTTACAGTTTCCCTGGATCAGAGGCTGTATCCTGAGAACCCATTGATCATATGGGAGAATGCTCGATCACCTGCTCCTCAGGAAGGCTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCTGCTAGTATACGGTTGGAGATGAACTACGTCCCTGAAAAGTTCAAGCTTTCTACTGCATTGATGGATGTTCTCGGGATTGAGGTTGAAACCCGCCCAAGAATCATCGCTGCAATTTGGCATTACGTTAAGGCGAGGAAACTGCAGAACCCAAATGACCCCTCTTTCTTCAACTGTGATGCTGCACTTCAGAAAGTTTTTGGAGAAGAAAAGTTGAAATTCACTATGGTCTCTCAGAAAATATCTCATCACTTGTCGCCTCCACCACCTATTCACTTAGAACACAAAATCAAGCTCTCAGGAAATAATCCGGCCGTATCAGCATGTTACGATGTGCTAGTGGATGTACCCTTCCCGATCCAAAGAGATCTGAACAATTTGCTAGCCAACGCAGAGAAGAACAAAGAGATTGAGGCTTGTGATGAAGCAATATGTGCAGCCATAAGGAAAATCCATGAGCATAGGAGGAGGCGGGCATTTTTCTTGGGGTTCAGCCAATCGCCAGTTGAATTCATAAACGCCCTGATCGAATCTCAGAGCAAGGATCTAAAGGTCGTTGCGGGAGAAGCCAGTCGAAATGCTGAGAGAGAACGTCGATCAGACTTCTTCAACCAACCTTGGGTCGAAGATGCAGTTATACGTTACTTGAACCGGAGGCCAGCAGCTGGGAACGATGGGCCAGGGAGTTGGTGAGTTTCTTGACGATACAAGTCTCTTCATCTGTTTGAGCATTTTTAGTAGAAGATATTGTTGAGATTAGTCTGGTTTAAAAGTGAACTAGTGTATCTGTAATCTTGTGTATGTTGAAACATTACTACTTTATATAATTAGCTTTGTTTTGTAGCCTTTGCGTTAATGGTTAAGTCATGTTTTTATTAGCAAAAGGAAAATAACATTGGCATTATTAAA
CDS Sequence
Protein Sequence