Gene Details:

  • Gene ID: AT5G13960
  • Gene Symbol: KYP, SDG33, SUVH4
  • Gene Name: KRYPTONITE, SET DOMAIN PROTEIN 33, SU(VAR)3-9 homolog 4
  • Description: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein;(source:Araport11)
  • TAIR Accession: locus:2159133
  • Genome: Araport11_genome_release
  • Species: Arabidopsis thaliana

Transcripts:

Plant Ontology Annotations:

  • PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
  • PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)

Gene Ontology:

  • GO:0044027  — acts upstream of or within — negative regulation of gene expression via CpG island methylation
  • GO:0018022  — acts upstream of or within — peptidyl-lysine methylation
  • GO:0003690  — enables — double-stranded DNA binding
  • GO:0010428  — enables — methyl-CpNpG binding
  • GO:0034968  — involved in — histone lysine methylation
  • GO:0046974  — enables — histone H3K9 methyltransferase activity
  • GO:0005515  — enables — protein binding
  • GO:0008270  — enables — zinc ion binding
  • GO:0010429  — enables — methyl-CpNpN binding
  • GO:0016571  — involved in — histone methylation
  • GO:0042054  — enables — histone methyltransferase activity
  • GO:0008327  — enables — methyl-CpG binding
  • GO:0010385  — enables — double-stranded methylated DNA binding
  • GO:0005634  — located in — nucleus

Germplasm Phenotype:

  • CS16385  — No visible phenotype.
  • CS16388  — Reduced plant size; curled leaves.
  • CS6367  — The kyp-2 mutant has defects in callus formation under laboratory conditions. Many fewer seeds form calluses compared to wild type seeds, and the calluses that do form are delayed and smaller in size. kyp-2 mutants are defective in the process known as alternative lengthening of telomeres, a telomerase-independent process. These mutants also show a loss of association between K9-dimethylated H3 histones and telomeric and centromeric DNA via ChIP assays.
  • CS6367  — Wild type morphology; lacks the cytosine methylation at sites of CpNpG trinucleotides (where N is A, C, G or T); low level of expression of two retrotransposon-related sequences (Athila and Ta3 sequences); suppresses the clark kent allele clk-3; lacks trichomes on stems and leaves.
  • SALK_105816C  — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:increased,oxidative stress:no change,osmotic stress:decreased,salt stress:no change,ABA:no change,hypoxia:no change.
  • kyp-1  — Loss of cytosine methylation, reactivation of endogenous transposons
  • kyp-3  — Phenotype not described.
  • kyp-5  — Decreasein amounts of H3K9me2 in chromocenters
  • suvh4E341K  — No visible phenotype.
  • suvh4R260H  — No visible phenotype.
  • suvh4R302*  — No visible phenotype.
  • suvh4S200F  — No visible phenotype.
  • suvh4W563*  — No visible phenotype.

Literature:

Sequences:

cDNA Sequence
  • >AT5G13960.2
    GAAAAGTTGAAATCGCCGGGAAAGAAAGAGGACAAACATTTATTTCGTGTCTACTTTCCTCCTTGAAATAAAAAAAGAATTAATTATACCAAAAAAAAGAGGAGAAAAAAAAAACTCTCATCTTCGTCGTCTTCACAGTTTCAATCTCGCGCTGCTTAGTCTCCTTCCGTCTCTTCTTCTCCGCTAGCTTTTCCAGGGGAAAAAGAGTGATCGATGGCTGGAAAAAGGAAACGAGCTAATGCTCCTGACCAAACAGAGCGAAGATCGAGTGTTCGGGTTCAGAAAGTGAGACAGAAAGCGTTAGATGAGAAGGCGCGTTTAGTACAGGAGAGGGTTAAGCTCCTCAGTGACAGAAAGAGTGAAATTTGTGTCGATGACACTGAGTTACATGAGAAAGAAGAGGAAAATGTCGATGGGAGCCCTAAACGAAGAAGCCCTCCAAAGCTAACCGCAATGCAGAAAGGAAAGCAGAAATTGAGTGTTTCTCTGAATGGTAAGGACGTGAACTTGGAACCTCATCTCAAAGTGACAAAGTGTCTGAGGTTATTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGGCCTGATTTGAAGGGTGTAACTGAGGCAAGTCATGATTTTTCTTACCTCTGGCCTTAGTTGCCTCATGCAACATTGTTTTGTCTATCAAGAAATGGAAGATGTCACAATGTTTTGTTAAGCAACATGTATCATTATACTTTGTGTTCTTGTAAATATGATGGTTTGTCTATTCTGTAATCTTCAATGCAAGTTGACTTAAGCCTTTAAGAAAATTTCCAGATGATAAAAGCTAAGGCGATATTGTACCCAAGAAAAATAATCGGTGACCTTCCAGGTATAGACGTTGGACACCGTTTTTTTTCAAGAGCTGAAATGTGTGCTGTAGGATTCCATAACCATTGGCTAAATGGCATTGATTATATGTCAATGGAATACGAAAAAGAGTATAGTAACTACAAATTACCGCTTGCTGTTTCTATTGTTATGTCGGGCCAGTACGAGGATGATCTAGACAATGCAGATACAGTGACTTACACTGGACAGGGAGGGCATAACTTAACTGGTAATAAACGTCAGATAAAGGATCAACTTTTAGAACGAGGGAATTTGGCGCTAAAGCACTGCTGCGAATATAATGTGCCTGTCAGAGTAACTCGTGGTCACAATTGCAAAAGTAGCTATACCAAACGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAGGGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAACTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAACGAGTACTTCAGAAATTGAGGGTTTGGTATGTGAGGACATCTCCGGAGGGCTAGAATTTAAGGGTATCCCCGCCACTAATCGTGTTGATGATTCACCAGTTTCACCAACATCTGGTTTCACATACATCAAATCTTTGATTATTGAGCCTAATGTCATAATTCCAAAGAGTTCAACTGGGTGTAACTGCCGAGGCAGCTGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGTAACTTTCCATATGTTGACCTTAATGATGGCAGATTAATTGAGTCTCGAGATGTTGTATTTGAATGTGGTCCTCACTGTGGGTGTGGGCCAAAATGTGTCAACCGAACTTCTCAGAAGCGTCTAAGATTCAATCTTGAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGAGTACATACCAGCTGGTTCACCAGTATGTGAGTACATAGGAGTTGTCAGGAGAACTGCTGATGTGGATACTATCTCTGACAATGAATACATATTTGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGAAGACAGAGAAGACTAAGAGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGTGAAGATGAGAATGCGCCAGAGTTCTGCATTGATGCTGGTTCAACAGGAAACTTTGCTAGGTTTATAAATCACAGTTGTGAACCAAACCTATTTGTTCAGTGCGTCCTGAGTTCTCACCAGGATATAAGGCTTGCCCGTGTGGTTCTTTTCGCAGCTGACAACATTTCCCCAATGCAGGAGCTCACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGACCGGATGGGAAGGTGAAGCAGCTCGCTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTTTACTAACAAAGGCTATTGGTGAACTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTCCCAAGTGGAAGAACCCTTCACATTTTATTTAAGGGACTTTAGCTTCTTCTGCAGCGTACGTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAATTCTATTGTTGCCATTGGCATCTTATCTATCGGGTCAACAATATTAATCATCTCTTTTTCTTATTTGC
  • >AT5G13960.1
    GAAAAGTTGAAATCGCCGGGAAAGAAAGAGGACAAACATTTATTTCGTGTCTACTTTCCTCCTTGAAATAAAAAAAGAATTAATTATACCAAAAAAAAGAGGAGAAAAAAAAAACTCTCATCTTCGTCGTCTTCACAGTTTCAATCTCGCGCTGCTTAGTCTCCTTCCGTCTCTTCTTCTCCGCTAGCTTTTCCAGGGGAAAAAGAGTGATCGATGGCTGGAAAAAGGAAACGAGCTAATGCTCCTGACCAAACAGAGCGAAGATCGAGTGTTCGGGTTCAGAAAGTGAGACAGAAAGCGTTAGATGAGAAGGCGCGTTTAGTACAGGAGAGGGTTAAGCTCCTCAGTGACAGAAAGAGTGAAATTTGTGTCGATGACACTGAGTTACATGAGAAAGAAGAGGAAAATGTCGATGGGAGCCCTAAACGAAGAAGCCCTCCAAAGCTAACCGCAATGCAGAAAGGAAAGCAGAAATTGAGTGTTTCTCTGAATGGTAAGGACGTGAACTTGGAACCTCATCTCAAAGTGACAAAGTGTCTGAGGTTATTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGGCCTGATTTGAAGGGTGTAACTGAGGCAAGTCATGATTTTTCTTACCTCTGGCCTTAGTTGCCTCATGCAACATTGTTTTGTCTATCAAGAAATGGAAGATGTCACAATGTTTTGTTAAGCAACATGTATCATTATACTTTGTGTTCTTGTAAATATGATGGTTTGTCTATTCTGTAATCTTCAATGCAAGTTGACTTAAGCCTTTAAGAAAATTTCCAGATGATAAAAGCTAAGGCGATATTGTACCCAAGAAAAATAATCGGTGACCTTCCAGGTATAGACGTTGGACACCGTTTTTTTTCAAGAGCTGAAATGTGTGCTGTAGGATTCCATAACCATTGGCTAAATGGCATTGATTATATGTCAATGGAATACGAAAAAGAGTATAGTAACTACAAATTACCGCTTGCTGTTTCTATTGTTATGTCGGGCCAGTACGAGGATGATCTAGACAATGCAGATACAGTGACTTACACTGGACAGGGAGGGCATAACTTAACTGGTAATAAACGTCAGATAAAGGATCAACTTTTAGAACGAGGGAATTTGGCGCTAAAGCACTGCTGCGAATATAATGTGCCTGTCAGAGTAACTCGTGGTCACAATTGCAAAAGTAGCTATACCAAACGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAGGGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAACTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAACGAGTACTTCAGAAATTGAGGGTTTGGTATGTGAGGACATCTCCGGAGGGCTAGAATTTAAGGGTATCCCCGCCACTAATCGTGTTGATGATTCACCAGTTTCACCAACATCTGGTTTCACATACATCAAATCTTTGATTATTGAGCCTAATGTCATAATTCCAAAGAGTTCAACTGGGTGTAACTGCCGAGGCAGCTGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGTAACTTTCCATATGTTGACCTTAATGATGGCAGATTAATTGAGTCTCGAGATGTTGTATTTGAATGTGGTCCTCACTGTGGGTGTGGGCCAAAATGTGTCAACCGAACTTCTCAGAAGCGTCTAAGATTCAATCTTGAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGAGTACATACCAGCTGGTTCACCAGTATGTGAGTACATAGGAGTTGTCAGGAGAACTGCTGATGTGGATACTATCTCTGACAATGAATACATATTTGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGAAGACAGAGAAGACTAAGAGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGTGAAGATGAGAATGCGCCAGAGTTCTGCATTGATGCTGGTTCAACAGGAAACTTTGCTAGGTTTATAAATCACAGTTGTGAACCAAACCTATTTGTTCAGTGCGTCCTGAGTTCTCACCAGGATATAAGGCTTGCCCGTGTGGTTCTTTTCGCAGCTGACAACATTTCCCCAATGCAGGAGCTCACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGACCGGATGGGAAGGTGAAGCAGCTCGCTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTTTACTAACAAAGGCTATTGGTGAACTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTCCCAAGTGGAAGAACCCTTCACATTTTATTTAAGGGACTTTAGCTTCTTCTGCAGCGTACGTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAATTCTATTGTTGCCATTGGCATCTTATCTATCGGGTCAACAATATTAATCATCTCTTTTTCTTATTTGC
CDS Sequence
Protein Sequence