Information report for AT5G13820
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000014 — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009049 — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0005634 — located in — nucleus
- GO:0000723 — acts upstream of or within — telomere maintenance
- GO:0003677 — enables — DNA binding
- GO:0005515 — enables — protein binding
- GO:0003691 — enables — double-stranded telomeric DNA binding
- GO:0000781 — located in — chromosome, telomeric region
- GO:0042162 — enables — telomeric DNA binding
Functional Keywords
- cauline leaf , rosette leaf , root , flower , inflorescence , root , plant sperm cell
Literature and News
- Salt tolerance-related protein STO binds to a Myb transcription factor homologue and confers salt tolerance in Arabidopsis. DOI: 10.1093/jxb/erg241 ; PMID: 12909688
- The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro. DOI: 10.1104/pp.103.026856 ; PMID: 14576282
- AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro. DOI: 10.1007/s00438-004-1096-3 ; PMID: 15688221
- Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding. DOI: 10.1093/nar/gkm043 ; PMID: 17272298
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. DOI: 10.1016/j.jmb.2009.11.065 ; PMID: 19962994
- Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. DOI: 10.3389/fgene.2015.00349 ; PMID: 26779251
- DRMY1, a Myb-Like Protein, Regulates Cell Expansion and Seed Production in Arabidopsis thaliana. DOI: 10.1093/pcp/pcy207 ; PMID: 30351427
Gene Resources
- UniProt: A0A178UEI8
- EMBL: CACRSJ010000110, LUHQ01000005
- AlphaFoldDB: A0A178UEI8
- EnsemblPlants: AT5G13820.1, AT5G13820.2
- Gramene: AT5G13820.1, AT5G13820.2
- KEGG: ath:AT5G13820
- Orthologous matrix: QQGKHHA
- ExpressionAtlas: AT5G13820
- InterPro: IPR000626, IPR001005, IPR009057
- PANTHER: PTHR21717, PTHR21717:SF64
- SUPFAM: SSF46689
- PROSITE: PS50053, PS50090, PS51294
- Gene3D: 1.10.246.220
- SWISS-MODEL: A0A178UEI8
- Conserved Domain Database: cd11660
Sequences
cDNA Sequence
- >AT5G13820.1
AAAAAATGGTGTATTTATTTTCTTCAAATGGGGGTTTAAGCTTTTTTTCAGTTGTTTGGTTTTTTCTTTTTCAAAGGGTTTAATGTCTTCTTCTTCTTCTTCTTCGTTATTTCTATTCTAGAAGAGAGAGAGAGAGAAAGACAAGGACGATCGTTAAATCTTTTTCTCTTAAATCTTAGAATTTCAAAGTCTCTGTAATTTTTTTCTCTTTTCATTTGTATAGCACAATTGTTCTTAATCAGAGATTCGTGAGAGGTAAAGGTAGCGTAATTATTCAGTTTGCGTGATCTATAATTTAACTGGCGCCAGATTGTGATCCAGGAATCGTTGGCTTGTTAGGTTGTTGTTTTGTTATGCATAATTGAGAGATGGTGGTCAAAAGGAAGTTAAATTGTGGTGGCTCTAATGGTTTTGATTTCCCCAATATTCCCAAGGCTCCTCGTTCAAGCAGGAGGAAGGTCTCAGGTAAGAGATCTGATGATGAAAGTGAGATCTGTGCAATTGATTTGCTAGCTTCTCTTGCTGGAAAGTTGTTGGAAGAAAGTGAAAGTTCCTCAACGTCTACCTATGCATCTGAAGCTGATAATCTTGATCATTTGGGTGGACTGATTAAGCAAGAACTTGAAGATGGCTATACTACTAAGCCTTGTAAATCCGAGTTTTTCGATCCAGGAAACCCTGCTTCAAAGTCTACTAGTGAAAATACTAGCGTGACTTGTTTGCCATTTTCGTCTTTCGAAAATGATTGCATTTTGGAGCAAACACCGGTTTCTGATTGTAAGAGGGCATCTGGTTTGAAGTCCCTGGTAGGGAGCATCACTGAGGAGACATGTGTTGTTAATGAGGATGCCGGATCTGAACAAGGTGCTAATACTTTCAGCTTAAAGGATCCAAGTCAATTACATTCGCAGTCTCCAGAATCGGTCCTTCTGGATGGCGATGTGAAATTAGCACCATGCACGGATCAAGTCCCTAATGATTCTTTTAAAGGATATAGGAATCATTCTAAGTTAGTTTGCAGAGATGATGACGAAAACTATTGTAAGTATTATAAATTTAGTGACAAATGTAAGTCATATAGGCCTCTCTCCCGGGTTGGCAATAGAAGAATAATGCAGTCGGTGAGAGCAATCTCCAAGTTGAAGTGTTTTGAAGACACTAGAACAGATGGTCGTTTGAAGGCTCTCTACCGCAAGAGAAAATTATGTTATGGTTACAACCCATGGAAGCGTGAGACCATTCATAGGAAGAGAAGATTGTCTGACAAAGGTTTGGTCGTAAATTATGATGGTGGGCTCAGTAGTGAAAGTGTTTCCAATTCACCTGAAAAGGGAGAATCAGAAAATGGTGATTTCTCTGCTGCAAAAATAGGTCTTCTTTCGAAAGACTCCCGTGTAAAGTTCAGCATCAAGTCCCTTAGGATTCCGGAGCTTGTAATTGAAGTTCCAGAAACAGCAACAGTAGGCTTACTGAAGAGGACGGTGAAGGAGGCGGTTACTGCTTTACTCGGTGGTGGAATACGTATTGGGGTGTTAGTCCAAGGGAAAAAAGTTAGAGATGACAACAACACTCTATCACAGACTGGTCTTTCGTGTAGAGAAAATCTTGGCAACCTTGGCTTCACCTTAGAGCCTGGTTTGGAAACACTGCCTGTACCTCTTTGTTCTGAAACTCCTGTCCTTTCTCTGCCAACTGACTCTACAAAGTTGTCAGAAAGGTCCGCAGCTTCTCCAGCGTTAGAGACTGGAATTCCTCTCCCTCCCCAAGATGAAGATTACTTGATTAATTTGGGAAATAGTGTGGAGAACAATGATGAATTAGTCCCACATCTGAGTGACATACCAGCTGATGAACAACCTTCATCAGATTCAAGAGCGCTGGTTCCAGTTTTGGCCTTGGAATCCGACGCTCTTGCACTTGTTCCAGTTAACGAGAAACCTAAGCGTACAGAGCTTTCACAACGCAGAACCAGGAGACCATTCTCTGTTACAGAGGTAGAAGCTCTAGTAAGCGCAGTTGAAGAAGTTGGGACTGGAAGATGGCGTGATGTGAAGTTGCGTTCTTTTGAGAATGCAAGTCATCGAACCTATGTGGACTTGAAGGACAAATGGAAAACGTTGGTTCACACAGCAAGTATATCACCACAGCAACGAAGAGGAGAACCAGTGCCTCAAGAACTGCTAGACAGAGTCTTAGGAGCACATAGGTACTGGACACAGCACCAAATGAAACAGAACGGGAAACATCAGGTGGCTACAACAATGGTGGTTGAAGCAGGTTCGTCCATGTAAAGAAGGAGAATGGTAATAACAATAACTTTCACTTGACGACTAAGGAACCAAAGTGGGCAACTGTACAAAGGGAAACAACAAAATACAGAAACATACTTAATTTCTGAAAAGAAGAGTCTATATTTTTATTTTTTTTAAATCATAGCTGGTAGAAACAAGACGTTCCTTGACACTTTTGGTTACTTTTATGGTAAGTCTGTTCATTCCAAATTTCTAATTGATTTGATTATGTAATTTGGTGGTAGGACCATGGAAAAAGGGGAAATGTAATTTTAGACAATTCTTTTATTTTTTTGTTCATCATTCCATTCAATCTAATATCTATGGACTATGGCAGTGACTGGTTTTCATCAATCTCTAAACCATTTGACAATACTTTGTC - >AT5G13820.2
AAAAAATGGTGTATTTATTTTCTTCAAATGGGGGTTTAAGCTTTTTTTCAGTTGTTTGGTTTTTTCTTTTTCAAAGGGTTTAATGTCTTCTTCTTCTTCTTCTTCGTTATTTCTATTCTAGAAGAGAGAGAGAGAGAAAGACAAGGACGATCGTTAAATCTTTTTCTCTTAAATCTTAGAATTTCAAAGTCTCTGTAATTTTTTTCTCTTTTCATTTGTATAGCACAATTGTTCTTAATCAGAGATTCGTGAGAGGTAAAGGTAGCGTAATTATTCAGTTTGCGTGATCTATAATTTAACTGGCGCCAGATTGTGATCCAGGAATCGTTGGCTTGTTAGGTTGTTGTTTTGTTATGCATAATTGAGAGATGGTGGTCAAAAGGAAGTTAAATTGTGGTGGCTCTAATGGTTTTGATTTCCCCAATATTCCCAAGGCTCCTCGTTCAAGCAGGAGGAAGGTCTCAGGTAAGAGATCTGATGATGAAAGTGAGATCTGTGCAATTGATTTGCTAGCTTCTCTTGCTGGAAAGTTGTTGGAAGAAAGTGAAAGTTCCTCAACGTCTACCTATGCATCTGAAGCTGATAATCTTGATCATTTGGGTGGACTGATTAAGCAAGAACTTGAAGATGGCTATACTACTAAGCCTTGTAAATCCGAGTTTTTCGATCCAGGAAACCCTGCTTCAAAGTCTACTAGTGAAAATACTAGCGTGACTTGTTTGCCATTTTCGTCTTTCGAAAATGATTGCATTTTGGAGCAAACACCGGTTTCTGATTGTAAGAGGGCATCTGGTTTGAAGTCCCTGGTAGGGAGCATCACTGAGGAGACATGTGTTGTTAATGAGGATGCCGGATCTGAACAAGGTGCTAATACTTTCAGCTTAAAGGATCCAAGTCAATTACATTCGCAGTCTCCAGAATCGGTCCTTCTGGATGGCGATGTGAAATTAGCACCATGCACGGATCAAGTCCCTAATGATTCTTTTAAAGGATATAGGAATCATTCTAAGTTAGTTTGCAGAGATGATGACGAAAACTATTGTAAGTATTATAAATTTAGTGACAAATGTAAGTCATATAGGCCTCTCTCCCGGGTTGGCAATAGAAGAATAATGCAGTCGGTGAGAGCAATCTCCAAGTTGAAGTGTTTTGAAGACACTAGAACAGATGGTCGTTTGAAGGCTCTCTACCGCAAGAGAAAATTATGTTATGGTTACAACCCATGGAAGCGTGAGACCATTCATAGGAAGAGAAGATTGTCTGACAAAGGTTTGGTCGTAAATTATGATGGTGGGCTCAGTAGTGAAAGTGTTTCCAATTCACCTGAAAAGGGAGAATCAGAAAATGGTGATTTCTCTGCTGCAAAAATAGGTCTTCTTTCGAAAGACTCCCGTGTAAAGTTCAGCATCAAGTCCCTTAGGATTCCGGAGCTTGTAATTGAAGTTCCAGAAACAGCAACAGTAGGCTTACTGAAGAGGACGGTGAAGGAGGCGGTTACTGCTTTACTCGGTGGTGGAATACGTATTGGGGTGTTAGTCCAAGGGAAAAAAGTTAGAGATGACAACAACACTCTATCACAGACTGGTCTTTCGTGTAGAGAAAATCTTGGCAACCTTGGCTTCACCTTAGAGCCTGGTTTGGAAACACTGCCTGTACCTCTTTGTTCTGAAACTCCTGTCCTTTCTCTGCCAACTGACTCTACAAAGTTGTCAGAAAGGTCCGCAGCTTCTCCAGCGTTAGAGACTGGAATTCCTCTCCCTCCCCAAGATGAAGATTACTTGATTAATTTGGGAAATAGTGTGGAGAACAATGATGAATTAGTCCCACATCTGAGTGACATACCAGCTGATGAACAACCTTCATCAGATTCAAGAGCGCTGGTTCCAGTTTTGGCCTTGGAATCCGACGCTCTTGCACTTGTTCCAGTTAACGAGAAACCTAAGCGTACAGAGCTTTCACAACGCAGAACCAGGAGACCATTCTCTGTTACAGAGGTAGAAGCTCTAGTAAGCGCAGTTGAAGAAGTTGGGACTGGAAGATGGCGTGATGTGAAGTTGCGTTCTTTTGAGAATGCAAGTCATCGAACCTATGTGGACTTGAAGGACAAATGGAAAACGTTGGTTCACACAGCAAGTATATCACCACAGCAACGAAGAGGAGAACCAGTGCCTCAAGAACTGCTAGACAGAGTCTTAGGAGCACATAGGTACTGGACACAGCACCAAATGAAACAGAACGGGAAACATCAGGTGGCTACAACAATGGTGGTTGAAGCAGGTTCGTCCATGTAAAGAAGGAGAATGGTAATAACAATAACTTTCACTTGACGACTAAGGAACCAAAGTGGGCAACTGTACAAAGGGAAACAACAAAATACAGAAACATACTTAATTTCTGAAAAGAAGAGTCTATATTTTTATTTTTTTTAAATCATAGCTGGTAGAAACAAGACGTTCCTTGACACTTTTGGTTACTTTTATGGTAAGTCTGTTCATTCCAAATTTCTAATTGATTTGATTATGTAATTTGGTGGTAGGACCATGGAAAAAGGGGAAATGTAATTTTAGACAATTCTTTTATTTTTTTGTTCATCATTCCATTCAATCTAATATCTATGGACTATGGCAGTGACTGGTTTTCATCAATCTCTAAACCATTTGACAATACTTTGTC
CDS Sequence
Protein Sequence