Information report for AT5G13790
Gene Details
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Functional Descriptions
- GO:0005515 — enables — protein binding
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0045892 — involved in — negative regulation of DNA-templated transcription
- GO:0045893 — involved in — positive regulation of DNA-templated transcription
- GO:0009910 — involved in — negative regulation of flower development
- GO:0003677 — enables — DNA binding
- GO:0010047 — involved in — fruit dehiscence
- GO:0000978 — enables — RNA polymerase II cis-regulatory region sequence-specific DNA binding
- GO:0045487 — acts upstream of or within — gibberellin catabolic process
- GO:0010262 — involved in — somatic embryogenesis
- GO:0045944 — involved in — positive regulation of transcription by RNA polymerase II
- GO:0006357 — involved in — regulation of transcription by RNA polymerase II
- GO:0010227 — acts upstream of or within — floral organ abscission
- GO:0060862 — involved in — negative regulation of floral organ abscission
- GO:0005634 — located in — nucleus
- GO:0071365 — involved in — cellular response to auxin stimulus
- GO:0043565 — enables — sequence-specific DNA binding
- GO:0060867 — involved in — fruit abscission
- GO:0048577 — involved in — negative regulation of short-day photoperiodism, flowering
- GO:0005737 — located in — cytoplasm
- GO:0042803 — enables — protein homodimerization activity
- GO:2000692 — involved in — negative regulation of seed maturation
- GO:0000981 — enables — DNA-binding transcription factor activity, RNA polymerase II-specific
- GO:0140110 — enables — transcription regulator activity
- GO:0010629 — acts upstream of or within — negative regulation of gene expression
- CS16478 — No visible phenotype.
- CS16479 — No visible phenotype.
- CS16480 — No visible phenotype.
- SALK_017947C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:increased,cold:no change,oxidative stress:no change,osmotic stress:decreased,salt stress:no change,ABA:no change,hypoxia:no change.
- SALK_066459C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:no change,oxidative stress:no change,osmotic stress:decreased,salt stress:no change,ABA:no change,hypoxia:no change.
Functional Keywords
Literature and News
- Isolation and molecular characterization of a new vegetative MADS-box gene from Solanum tuberosum L. DOI: 10.1007/s004250050471 ; PMID: 9951721
- The MADS domain protein AGL15 localizes to the nucleus during early stages of seed development. DOI: 10.1105/tpc.8.11.1977 ; PMID: 8953767
- Diverse roles for MADS box genes in Arabidopsis development. DOI: 10.1105/tpc.7.8.1259 ; PMID: 7549482
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- MADS-box gene evolution beyond flowers: expression in pollen, endosperm, guard cells, roots and trichomes. DOI: 10.1046/j.1365-313x.2000.00891.x ; PMID: 11115127
- Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study. DOI: 10.1074/jbc.M212976200 ; PMID: 12743119
- Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. DOI: 10.1105/tpc.011544 ; PMID: 12837945
- The major clades of MADS-box genes and their role in the development and evolution of flowering plants. DOI: 10.1016/s1055-7903(03)00207-0 ; PMID: 14615187
- The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis. DOI: 10.1111/j.1365-313X.2007.03105.x ; PMID: 17521410
- The MADS-domain transcriptional regulator AGAMOUS-LIKE15 promotes somatic embryo development in Arabidopsis and soybean. DOI: 10.1104/pp.108.115832 ; PMID: 18305206
- Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis. DOI: 10.1073/pnas.0511331103 ; PMID: 16492731
- Arabidopsis cold shock domain proteins: relationships to floral and silique development. DOI: 10.1093/jxb/ern351 ; PMID: 19269998
- Expression of MADS-box genes during the embryonic phase in Arabidopsis. DOI: 10.1007/s11103-005-4546-3 ; PMID: 16028119
- A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components. DOI: 10.1111/j.1365-313X.2007.03336.x ; PMID: 17999645
- Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15. DOI: 10.1105/tpc.109.068890 ; PMID: 19767455
- A novel HSI2 mutation in Arabidopsis affects the PHD-like domain and leads to derepression of seed-specific gene expression. DOI: 10.1007/s00425-012-1630-1 ; PMID: 22476218
- AGAMOUS-Like15 promotes somatic embryogenesis in Arabidopsis and soybean in part by the control of ethylene biosynthesis and response. DOI: 10.1104/pp.113.216275 ; PMID: 23457229
- Expression of the floral repressor miRNA156 is positively regulated by the AGAMOUS-like proteins AGL15 and AGL18. DOI: 10.14348/molcells.2015.2311 ; PMID: 25666346
- Floral organ abscission is regulated by a positive feedback loop. DOI: 10.1073/pnas.1423595112 ; PMID: 25730871
- The class III peroxidase PRX17 is a direct target of the MADS-box transcription factor AGAMOUS-LIKE15 (AGL15) and participates in lignified tissue formation. DOI: 10.1111/nph.14127 ; PMID: 27513887
- The MADS-Domain Factors AGAMOUS-LIKE15 and AGAMOUS-LIKE18, along with SHORT VEGETATIVE PHASE and AGAMOUS-LIKE24, Are Necessary to Block Floral Gene Expression during the Vegetative Phase. DOI: 10.1104/pp.114.242990 ; PMID: 24948837
- HSI2/VAL1 Silences AGL15 to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis. DOI: 10.1105/tpc.17.00655 ; PMID: 29475938
- Current Perspectives on the Auxin-Mediated Genetic Network that Controls the Induction of Somatic Embryogenesis in Plants. DOI: 10.3390/ijms21041333 ; PMID: 32079138
- AGL15 Controls the Embryogenic Reprogramming of Somatic Cells in Arabidopsis through the Histone Acetylation-Mediated Repression of the miRNA Biogenesis Genes. DOI: 10.3390/ijms21186733 ; PMID: 32937992
- Hypermethylation of Auxin-Responsive Motifs in the Promoters of the Transcription Factor Genes Accompanies the Somatic Embryogenesis Induction in Arabidopsis. DOI: 10.3390/ijms21186849 ; PMID: 32961931
- Brassinosteroids repress the seed maturation program during the seed-to-seedling transition. DOI: 10.1093/plphys/kiab089 ; PMID: 33620498
- The transcriptional repressors VAL1 and VAL2 mediate genome-wide recruitment of the CHD3 chromatin remodeler PICKLE in Arabidopsis. DOI: 10.1093/plcell/koac217 ; PMID: 35866997
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A384LKZ8
- EMBL: CACRSJ010000110, CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A384LKZ8
- EnsemblPlants: AT5G13790.2
- Gramene: AT5G13790.2
- Orthologous matrix: IECTSND
- ExpressionAtlas: AT5G13790
- InterPro: IPR002100, IPR002487, IPR033896
- PANTHER: PTHR48019
- SUPFAM: SSF55455
- PROSITE: PS00350, PS50066, PS51297
- Gene3D: 3.40.1810.10
- OrthoDB: A0A384LKZ8
- SWISS-MODEL: A0A384LKZ8
- Conserved Domain Database: cd00265
Sequences
cDNA Sequence
- >AT5G13790.2
TAAAAACAAAAATATTCCATCCAAATTTAGCAATCTTTTGTGTTCCCATTAATAGATTCCCAAAAAGCACTTCTAAACCCATTTTGGAATACATTGAACCTTTCCTCTTCTTCTTCTTCCTTCTACCTTCTTCTCTCTGTTCAATTTTGGGGGAAAATGGGTCGTGGAAAAATCGAGATAAAGAGGATCGAGAATGCGAATAGCAGACAAGTCACTTTTTCCAAGAGGCGTTCTGGGTTACTTAAGAAAGCTCGTGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTGTCATCGTCTTCTCTAAGTCTGGCAAGCTCTTCGAGTACTCCAGTACTGGAATGAAGCAAACACTTTCCAGATACGGTAATCACCAGAGTTCTTCAGCTTCTAAAGCAGAGAACCTCCAGGAGGATTGTGCAGAGGTGGATATTTTAAAGGATCAACTTTCAAAGCTTCAAGAGAAACATTTACAACTGCAGGGCAAGGGCTTGAATCCTCTGACCTTTAAAGAGCTGCAAAGCCTTGAGCAGCAACTATATCATGCATTGATTACTGTCAGAGAGCGAAAGGAACGATTGCTGACTAACCAACTTGAAGAATCACGCCTCAAGGAACAACGAGCAGAGTTGGAAAACGAGACCTTGCGTAGACAGGTTCAAGAACTGAGGAGCTTTCTCCCGTCGTTCACCCACTATGTTCCATCCTACATCAAATGCTTTGCTATAGATCCAAAGAACGCTCTCATAAACCACGACAGTAAATGCAGCCTCCAGAACACCGATTCAGACACAACTTTGCAATTAGGGTTGCCGGGAGAGGCACATGATAGAAGGACGAATGAAGGAGAAAGAGAGAGCCCGTCAAGCGATTCAGTGACAACAAACACGAGCAGCGAAACTGCAGAAAGAGGGGATCAGTCTAGTTTAGCAAATTCTCCACCTGAAGCCAAAAGACAAAGGTTCTCTGTTTAGTCCTAGAAAAGTATGGGAGAAGGCTACTAATGTTTCCTCTTTAGCAAGTATCCGATTGTTTTAAAAGTAATTTTAGAGGGATACTTGCAAAAAGAAGAGAAGATTCAGTTATCTAATCTCTGCACCAACTCTCTTTGTCCTTCTTCTTTTGATTATTTCTCGACTGTCTCTCCTATAAAAAAGATATGCCTAGCTGAGAGTTTGAAATCCATAATCTTTACAAGGCACAGAGTTATTTGACATCTCGTATAGTAAGAAAATTTGCG - >AT5G13790.1
TAAAAACAAAAATATTCCATCCAAATTTAGCAATCTTTTGTGTTCCCATTAATAGATTCCCAAAAAGCACTTCTAAACCCATTTTGGAATACATTGAACCTTTCCTCTTCTTCTTCTTCCTTCTACCTTCTTCTCTCTGTTCAATTTTGGGGGAAAATGGGTCGTGGAAAAATCGAGATAAAGAGGATCGAGAATGCGAATAGCAGACAAGTCACTTTTTCCAAGAGGCGTTCTGGGTTACTTAAGAAAGCTCGTGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTGTCATCGTCTTCTCTAAGTCTGGCAAGCTCTTCGAGTACTCCAGTACTGGAATGAAGCAAACACTTTCCAGATACGGTAATCACCAGAGTTCTTCAGCTTCTAAAGCAGAGAACCTCCAGGAGGATTGTGCAGAGGTGGATATTTTAAAGGATCAACTTTCAAAGCTTCAAGAGAAACATTTACAACTGCAGGGCAAGGGCTTGAATCCTCTGACCTTTAAAGAGCTGCAAAGCCTTGAGCAGCAACTATATCATGCATTGATTACTGTCAGAGAGCGAAAGGAACGATTGCTGACTAACCAACTTGAAGAATCACGCCTCAAGGAACAACGAGCAGAGTTGGAAAACGAGACCTTGCGTAGACAGGTTCAAGAACTGAGGAGCTTTCTCCCGTCGTTCACCCACTATGTTCCATCCTACATCAAATGCTTTGCTATAGATCCAAAGAACGCTCTCATAAACCACGACAGTAAATGCAGCCTCCAGAACACCGATTCAGACACAACTTTGCAATTAGGGTTGCCGGGAGAGGCACATGATAGAAGGACGAATGAAGGAGAAAGAGAGAGCCCGTCAAGCGATTCAGTGACAACAAACACGAGCAGCGAAACTGCAGAAAGAGGGGATCAGTCTAGTTTAGCAAATTCTCCACCTGAAGCCAAAAGACAAAGGTTCTCTGTTTAGTCCTAGAAAAGTATGGGAGAAGGCTACTAATGTTTCCTCTTTAGCAAGTATCCGATTGTTTTAAAAGTAATTTTAGAGGGATACTTGCAAAAAGAAGAGAAGATTCAGTTATCTAATCTCTGCACCAACTCTCTTTGTCCTTCTTCTTTTGATTATTTCTCGACTGTCTCTCCTATAAAAAAGATATGCCTAGCTGAGAGTTTGAAATCCATAATCTTTACAAGGCACAGAGTTATTTGACATCTCGTATAGTAAGAAAATTTGCG
CDS Sequence
Protein Sequence