Information report for AT5G13650
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0009409 — involved in — response to cold
- GO:0009570 — located in — chloroplast stroma
- GO:0000302 — acts upstream of or within — response to reactive oxygen species
- GO:0005525 — enables — GTP binding
- GO:0006364 — involved in — rRNA processing
- GO:0005829 — is active in — cytosol
- GO:0009507 — located in — chloroplast
- GO:0031425 — acts upstream of or within — chloroplast RNA processing
- GO:0003924 — enables — GTPase activity
- GO:0009536 — located in — plastid
- GO:1990904 — part of — ribonucleoprotein complex
- GO:0050821 — involved in — protein stabilization
- GO:0003729 — enables — mRNA binding
- GO:0010468 — acts upstream of or within — regulation of gene expression
Functional Keywords
Literature and News
- Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02156.x ; PMID: 15272873
- Analysis of transposon insertion mutants highlights the diversity of mechanisms underlying male progamic development in Arabidopsis. DOI: 10.1534/genetics.104.030270 ; PMID: 15342534
- The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. DOI: 10.1104/pp.106.090431 ; PMID: 17122072
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- A var2 leaf variegation suppressor locus, SUPPRESSOR OF VARIEGATION3, encodes a putative chloroplast translation elongation factor that is important for chloroplast development in the cold. DOI: 10.1186/1471-2229-10-287 ; PMID: 21187014
- Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm. DOI: 10.1007/s12192-012-0398-3 ; PMID: 23334891
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. DOI: 10.1074/mcp.M500180-MCP200 ; PMID: 16207701
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: A0A178UMQ9
- EMBL: LUHQ01000005
- AlphaFoldDB: A0A178UMQ9
- EnsemblPlants: AT5G13650.1
- Gramene: AT5G13650.1
- KEGG: ath:AT5G13650
- Orthologous matrix: MEVYKGQ
- ExpressionAtlas: AT5G13650
- InterPro: IPR000640, IPR000795, IPR004161
- PANTHER: PTHR42908, PTHR42908:SF8
- SUPFAM: SSF50447, SSF52540, SSF54980
- PROSITE: PS00301, PS51722
- Gene3D: 2.40.30.10, 2.40.50.250, 3.30.70.240
- OrthoDB: A0A178UMQ9
- SWISS-MODEL: A0A178UMQ9
- Conserved Domain Database: cd01891, cd03691, cd03710
Sequences
cDNA Sequence
- >AT5G13650.1
ATAAAATCCTTTAAGCTCCCCTCTCTCTCCCATTCTCTTCTCCCTTTTCTCTGTTTCGCGGCGGAGAAAATTGAAATGGAGCTCAGCTTGAGCACTTCCTCCGCTTCTCCTGCGGTTTTGAGGAGACAAGCTTCTCCTCTGCTTCACAAGCAGCAAGTGCTCGGCGTCAGCTTTGCTTCCGCGCTCAAACCTGGAGGAGGAGCTCTTCGATTTCCTTCCCGCCGTCCGCTTCCTCGTCCCATCACTTGCTCCGCCTCTCCATCAACTGCCGAACCAGCCTCCGAGGTGAAGAAGAAGCAGTTGGATAGGAGGGATAACGTGAGGAATATCGCAATCGTTGCACATGTTGATCATGGCAAAACTACTTTGGTTGATTCTATGCTTAGGCAAGCTAAGGTTTTCCGAGATAACCAAGTCATGCAAGAGAGGATCATGGACTCAAATGACCTTGAGCGTGAAAGAGGAATCACTATTCTTAGCAAAAATACCTCCATCACTTACAAAAACACTAAAGTAAATATTATAGATACTCCTGGCCATTCTGACTTTGGGGGTGAAGTGGAGCGTGTCTTGAACATGGTTGATGGAGTGCTTCTTGTGGTGGACTCTGTTGAGGGACCAATGCCCCAGACAAGGTTTGTTTTAAAGAAGGCTCTTGAGTTTGGACATGCAGTGGTCGTGGTCGTAAACAAGATTGACAGGCCTTCTGCTCGTCCTGAATTTGTTGTCAATTCCACTTTTGAACTATTTATTGAACTAAATGCAACAGATGAACAGTGTGATTTCCAAGCGATATATGCTAGTGGGATTAAAGGAAAGGCGGGGCTTTCTCCGGATGACCTTGCAGAAGACCTGGGACCCCTGTTCGAAGCTATAATCAGATGCGTACCTGGGCCAAATATTGAAAAAGATGGTGCACTTCAGATGCTTGCCACAAATATTGAGTATGATGAGCATAAAGGACGCATTGCTATTGGACGACTACACGCAGGGGTACTGCGCAAAGGAATGGATGTCAGGGTGTGCACTTCTGAAGATTCCTGTAGATTTGCAAGAGTTAGTGAGCTTTTTGTATATGAGAAATTCTACAGAGTACCTACTGATTCAGTGGAAGCTGGAGATATTTGCGCTGTATGTGGCATAGACAACATTCAGATTGGGGAGACTATTGCTGATAAAGTACATGGGAAGCCTCTACCTACAATCAAAGTAGAAGAGCCAACTGTGAAAATGTCCTTCTCTGTAAACACCTCTCCATTTTCTGGTCGTGAGGGGAAGTATGTAACAAGCAGGAACTTACGAGATCGTTTAAACCGTGAACTTGAAAGAAATCTAGCTATGAAAGTGGAAGATGGTGAGACAGCAGACACATTCATTGTTAGTGGGCGTGGTACATTACACATTACCATCCTGATAGAAAACATGCGAAGAGAAGGATATGAATTTATGGTTGGCCCCCCGAAAGTTATCAACAAAAGGGTTAACGATAAATTGCTGGAGCCATATGAGATAGCAACTGTTGAAGTACCAGAGGCTCACATGGGGCCTGTTGTTGAACTTCTTGGCAAAAGGCGTGGACAGATGTTTGATATGCAGGGTGTTGGGTCGGAAGGAACAACCTTTCTGCGGTACAAAATCCCAACACGTGGACTTCTTGGATTGAGGAACGCAATTTTAACAGCTTCTCGCGGGACAGCTATCCTTAACACTGTATTTGACAGTTATGGACCTTGGGCCGGTGATATTAGCACCCGCGATCTAGGTTCGCTGGTTGCCTTTGAAGATGGAACATCAACATCATATGCCCTGGCGAGTGCGCAGGAGAGAGGGCAAATGTTTGTAGGTTCTGGAGTGGATGTATACAAAGGTCAGATAGTTGGGATCCACCAGAGACCCGGCGACTTGGGTCTTAATATCTGCAAGAAGAAGGCAGCGACAAACATAAGATCCAACAAAGATGTAACAGTGATTCTTGACACTCCCTTAACATATAGTCTGGACGACTGCATCGAATACATTGAAGAGGATGAGTTGGTGGAGGTTACACCTTCTAGTATTAGGATGTGCAAGAATCAGAAAATGGCAAAGAAAGGCAGGCAGTAAAACCCATTTTTGCAAGCTGGGTTTGGAGGAAATTGAAGAAAAGCTTCTACTAAAAAAAAATGAAAGCTAGTTTCTAGTGTTATTTATAGGCTTGTTTGATTGTTATACATAGTCTTATTCTTATAGCAAAGGGTGAGTCCTGATGTTATCCAATTAATGTTTTTTTGGAATATCTCCATGCCCTTTGATCATCTGATACTTAAAGCTGTACAACTTCTGAAGTTGCGCACTAGCAGATATTAAAGTGTGAATCCTTGAGCATATACTGGAAAATATAGGCTTGTTTGATAGTTTCTAGTGTTATTTATAGACTTGTTTGATTGTTATA - >AT5G13650.2
ATAAAATCCTTTAAGCTCCCCTCTCTCTCCCATTCTCTTCTCCCTTTTCTCTGTTTCGCGGCGGAGAAAATTGAAATGGAGCTCAGCTTGAGCACTTCCTCCGCTTCTCCTGCGGTTTTGAGGAGACAAGCTTCTCCTCTGCTTCACAAGCAGCAAGTGCTCGGCGTCAGCTTTGCTTCCGCGCTCAAACCTGGAGGAGGAGCTCTTCGATTTCCTTCCCGCCGTCCGCTTCCTCGTCCCATCACTTGCTCCGCCTCTCCATCAACTGCCGAACCAGCCTCCGAGGTGAAGAAGAAGCAGTTGGATAGGAGGGATAACGTGAGGAATATCGCAATCGTTGCACATGTTGATCATGGCAAAACTACTTTGGTTGATTCTATGCTTAGGCAAGCTAAGGTTTTCCGAGATAACCAAGTCATGCAAGAGAGGATCATGGACTCAAATGACCTTGAGCGTGAAAGAGGAATCACTATTCTTAGCAAAAATACCTCCATCACTTACAAAAACACTAAAGTAAATATTATAGATACTCCTGGCCATTCTGACTTTGGGGGTGAAGTGGAGCGTGTCTTGAACATGGTTGATGGAGTGCTTCTTGTGGTGGACTCTGTTGAGGGACCAATGCCCCAGACAAGGTTTGTTTTAAAGAAGGCTCTTGAGTTTGGACATGCAGTGGTCGTGGTCGTAAACAAGATTGACAGGCCTTCTGCTCGTCCTGAATTTGTTGTCAATTCCACTTTTGAACTATTTATTGAACTAAATGCAACAGATGAACAGTGTGATTTCCAAGCGATATATGCTAGTGGGATTAAAGGAAAGGCGGGGCTTTCTCCGGATGACCTTGCAGAAGACCTGGGACCCCTGTTCGAAGCTATAATCAGATGCGTACCTGGGCCAAATATTGAAAAAGATGGTGCACTTCAGATGCTTGCCACAAATATTGAGTATGATGAGCATAAAGGACGCATTGCTATTGGACGACTACACGCAGGGGTACTGCGCAAAGGAATGGATGTCAGGGTGTGCACTTCTGAAGATTCCTGTAGATTTGCAAGAGTTAGTGAGCTTTTTGTATATGAGAAATTCTACAGAGTACCTACTGATTCAGTGGAAGCTGGAGATATTTGCGCTGTATGTGGCATAGACAACATTCAGATTGGGGAGACTATTGCTGATAAAGTACATGGGAAGCCTCTACCTACAATCAAAGTAGAAGAGCCAACTGTGAAAATGTCCTTCTCTGTAAACACCTCTCCATTTTCTGGTCGTGAGGGGAAGTATGTAACAAGCAGGAACTTACGAGATCGTTTAAACCGTGAACTTGAAAGAAATCTAGCTATGAAAGTGGAAGATGGTGAGACAGCAGACACATTCATTGTTAGTGGGCGTGGTACATTACACATTACCATCCTGATAGAAAACATGCGAAGAGAAGGATATGAATTTATGGTTGGCCCCCCGAAAGTTATCAACAAAAGGGTTAACGATAAATTGCTGGAGCCATATGAGATAGCAACTGTTGAAGTACCAGAGGCTCACATGGGGCCTGTTGTTGAACTTCTTGGCAAAAGGCGTGGACAGATGTTTGATATGCAGGGTGTTGGGTCGGAAGGAACAACCTTTCTGCGGTACAAAATCCCAACACGTGGACTTCTTGGATTGAGGAACGCAATTTTAACAGCTTCTCGCGGGACAGCTATCCTTAACACTGTATTTGACAGTTATGGACCTTGGGCCGGTGATATTAGCACCCGCGATCTAGGTTCGCTGGTTGCCTTTGAAGATGGAACATCAACATCATATGCCCTGGCGAGTGCGCAGGAGAGAGGGCAAATGTTTGTAGGTTCTGGAGTGGATGTATACAAAGGTCAGATAGTTGGGATCCACCAGAGACCCGGCGACTTGGGTCTTAATATCTGCAAGAAGAAGGCAGCGACAAACATAAGATCCAACAAAGATGTAACAGTGATTCTTGACACTCCCTTAACATATAGTCTGGACGACTGCATCGAATACATTGAAGAGGATGAGTTGGTGGAGGTTACACCTTCTAGTATTAGGATGTGCAAGAATCAGAAAATGGCAAAGAAAGGCAGGCAGTAAAACCCATTTTTGCAAGCTGGGTTTGGAGGAAATTGAAGAAAAGCTTCTACTAAAAAAAAATGAAAGCTAGTTTCTAGTGTTATTTATAGGCTTGTTTGATTGTTATACATAGTCTTATTCTTATAGCAAAGGGTGAGTCCTGATGTTATCCAATTAATGTTTTTTTGGAATATCTCCATGCCCTTTGATCATCTGATACTTAAAGCTGTACAACTTCTGAAGTTGCGCACTAGCAGATATTAAAGTGTGAATCCTTGAGCATATACTGGAAAATATAGGCTTGTTTGATAGTTTCTAGTGTTATTTATAGACTTGTTTGATTGTTATA
CDS Sequence
Protein Sequence