Information report for AT5G13580
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0055085 — involved in — transmembrane transport
- GO:0140359 — enables — ABC-type transporter activity
- GO:0042626 — enables — ATPase-coupled transmembrane transporter activity
- GO:0005886 — located in — plasma membrane
- GO:0016020 — is active in — membrane
- GO:0010345 — acts upstream of or within — suberin biosynthetic process
- GO:1903825 — acts upstream of or within — organic acid transmembrane transport
- GO:0009624 — acts upstream of or within — response to nematode
- GO:0016887 — enables — ATP hydrolysis activity
- atjat3-1 — lower amount of 3H-JA
- atjat3-1;4-1 — Strong decrease of 3H-JA retention; wound-induced JA burst in the distal leaves was significantly decreased.
Literature and News
- The Arabidopsis thaliana ABC protein superfamily, a complete inventory. DOI: 10.1074/jbc.M103104200 ; PMID: 11346655
- Nematode-induced changes of transporter gene expression in Arabidopsis roots. DOI: 10.1094/MPMI-18-1247 ; PMID: 16478044
- cGMP modulates gene transcription and cation transport in Arabidopsis roots. DOI: 10.1111/j.1365-313X.2005.02616.x ; PMID: 16460505
- Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DOI: 10.1093/dnares/dsl013 ; PMID: 17164256
- Plant ABC proteins–a unified nomenclature and updated inventory. DOI: 10.1016/j.tplants.2008.02.001 ; PMID: 18299247
- Acyl-lipid metabolism. DOI: 10.1199/tab.0161 ; PMID: 23505340
- ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis. DOI: 10.1105/tpc.114.129049 ; PMID: 25217507
- Root Suberin Plays Important Roles in Reducing Water Loss and Sodium Uptake in Arabidopsis thaliana. DOI: 10.3390/metabo11110735 ; PMID: 34822393
- Disruption of the ABA1 encoding zeaxanthin epoxidase caused defective suberin layers in Arabidopsis seed coats. DOI: 10.3389/fpls.2023.1156356 ; PMID: 37008500
Gene Resources
- UniProt: A0A178UDB5
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UDB5
- EnsemblPlants: AT5G13580.1
- Gramene: AT5G13580.1
- KEGG: ath:AT5G13580
- Orthologous matrix: AGQMCTG
- ExpressionAtlas: AT5G13580
- InterPro: IPR003439, IPR003593, IPR013525
- PANTHER: PTHR48041, PTHR48041:SF83
- SUPFAM: SSF52540
- PROSITE: PS00211, PS50893
- Gene3D: 3.40.50.300
- OrthoDB: A0A178UDB5
- SWISS-MODEL: A0A178UDB5
Sequences
cDNA Sequence
- >AT5G13580.1
GCATGTTAAACAGCCCAACCACATTGAGAATTTTATCTATAAATAGAATTAGAAATTAAATCCTTGGTTAAACCCATAACTCTTCTTTCCTCTTTTCTTCTCCGGCTAACGGTAGTTTTGACGCCGTTAGTTTTTCCTCCGTCTATTGATTTTTCCCGCTTCACAATCGCAACAAACCCAAAGAAGAATGTCTCGTGTGGTCGCAGCGGACGACAATATGGCGTTGCCGTTCTTCTCGCCGGAGTTTGGCAATGTCTCAGGCGCGTCGTCTTCTCCAACAACGTTCGCACAGCTCTTGCAAAACGTCGACGACTCCACGCGTCGTAGTCACCACCAGCATCACGTTGATGTGGATCTCGCCTCGCCGGACCAATCCGTACCGTTCGTTCTCTCGTTCACTGATCTCACTTACAGCGTCAAAGTTCGCCGGAAGTTCACATGGAGACGCAGTGTTTCTTCAGATCCTGGAGCTCCGTCTGAGGGGATCTTCTCTTCCAAGACGAAGACGCTCCTCAACGGAATCACCGGAGAAGCTAGAGACGGAGAGATACTAGCTGTGCTCGGAGCAAGTGGCTCTGGAAAATCGACGCTGATCGATGCGTTAGCGAATCGAATCGCTAAAGGAAGCTTGAAAGGAAATGTAACTCTAAACGGAGAAGTTCTCAATTCGAAAATGCAGAAAGCGATCTCAGCTTATGTGATGCAAGACGATCTTCTTTTTCCGATGCTTACAGTTGAAGAAACCTTAATGTTCGCTGCCGAGTTTCGTCTCCCGCGAAGCCTTTCGAAATCAAAGAAGTCTCTCCGTGTCCAAGCCTTGATTGATCAGTTAGGACTTAGAAACGCGGCGAATACGGTGATCGGAGATGAAGGACACCGTGGAATCTCTGGAGGAGAGCGACGGCGAGTTTCAATCGGGATCGATATCATCCACGATCCGATTCTGCTTTTCCTCGATGAACCAACTTCGGGTCTGGACTCTACAAGTGCTCTAAGTGTTATTAAGGTTCTTAAACGAATCGCTCAGAGTGGAAGTATGGTGATCATGACTCTTCATCAACCTAGTTACCGTCTTCTTCGATTGCTTGATCGTCTTCTCTTCTTGTCCCGTGGCCAAACTGTCTTCAGCGGATCGCCTGCGATGCTACCGCGCTTCTTCGCAGAGTTTGGCCATCCAATTCCTGAACATGAGAACCGCACCGAGTTCGCTTTGGATTTGATACGTGAGCTGGAAGGATCAGCTGGTGGAACAAGAAGTTTAGTTGAATTCAACAAAGGGTTTAGACAGAGGAAAGCAGAGCCAAGAAGTCAGACTGGCTTGTCCTTAAAAGAAGCCATCAGCGCAAGTATCTCTAAAGGCAAGCTCGTCTCTGGAGCGACCACAACAACTCATAGCTCTGGCTCGAGCCCTGTTTCCACTATTCCAACTTTCGCGAACCCGTTTTGGGTCGAACTCGCGGTTCTAGCCAAACGGTCCATGACTAATTCTCGCAGACAGCCTGAACTATTCGGGATACGCCTAGGAGCTGTTTTAGTCACTGGATTCATCTTAGCCACTATGTTTTGGCAGCTAGATAACTCCCCTAAAGGAGTCCAAGAACGTCTTGGATGCTTCGCTTTTGCAATGTCCACAACGTTCTACACTTGCGCAGATGCTCTCCCTGTTTTCCTCCAAGAACGTTTCATTTTCATGAGAGAAACTGCTTACAACGCTTACCGAAGATCCTCCTATGTACTATCTCACTCTCTTGTTGCCCTCCCTTCCTTGATCATCCTCTCGCTTGCTTTTGCAGCGATCACATTTTGGGGTGTGGGTTTAGATGGAGGTCTTATGGGTTTCCTCTTCTACTTCCTAGTAATCTTAGCCTCTTTCTGGGCAGGAAGCTCATTCGTCACCTTCTTATCAGGCGTTGTCCCACACGTTATGCTCGGTTACACCATTGTTGTAGCCATTTTAGCCTATTTCTTGCTTTTCAGTGGATTCTTCATCAACCGAGATCGAATCCCTGGCTACTGGATCTGGTTCCATTACATTTCCTTAGTCAAGTATCCTTATGAGGCTGTGCTCCTAAACGAATTCGGTGACCCAACAAAGTGTTTCGTCAGAGGAGTTCAGATATTCGACAACACACCTCTGGTCGCGGTGCCTCAGGGGATGAAAGTTAGGCTTCTAGCAACTATGAGCAAATCACTTGGAATGAGGATCACAAGCTCTACTTGCTTGACCACAGGATATGACATTTTGCAGCAACAAGGCGTTACGGATCTCACCAAATGGAATTGCTTGTGGGTCACGGTCGCTTGGGGCTTCTTCTTTCGAATCTTGTTCTACTTTTCTCTGCTTTTGGGTAGCAAGAACAAGAGGAGGTAAAAACAAAACTCAGTTTGATCTTATGGAGGACTGGTTTGAAACTTGATTTACCTTTGTTTGTTTTCTGTATTTTTCTTTTATCTCTTTGTTGTATATTCTTATATATGTGGTTGATAAATTGTTGAATTGGAGCCCAACT
CDS Sequence
Protein Sequence