Gene Details:

• Gene ID: AT5G13480
• Gene Symbol: FY, WDR33
• Gene Name:
• Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
• TAIR Accession: locus:2185036
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G13480.1     AT5G13480.2     AT5G13480.3     AT5G13480.4

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0000025  — root tip — punta de la raíz (Spanish, exact), 根端 (Japanese, exact)
• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0005515  — enables — protein binding
• GO:0005634  — located in — nucleus
• GO:0009909  — acts upstream of or within — regulation of flower development
• GO:0080008  — part of — Cul4-RING E3 ubiquitin ligase complex
• GO:0009793  — acts upstream of or within — embryo development ending in seed dormancy
• GO:0006378  — involved in — mRNA polyadenylation
• GO:0031124  — involved in — mRNA 3-end processing GO:0031124 19779 P nucleobase-containing compound metabolic process IEA none InterPro:IPR045245 AnalysisReference:501756966 2023-06-11 AT5G13480 locus:2185036 AT5G13480 acts upstream of or within mRNA processing GO:0006397 6230 P nucleobase-containing compound metabolic process IGI Inference about one gene drawn from the phenotype of a mutation in a different gene NONE Publication:501706928|PMID:12809608 TAIR 2005-11-01 AT5G13480 locus:2185036 AT5G13480 acts upstream of or within mRNA processing GO:0006397 6230 P other metabolic processes IGI Inference about one gene drawn from the phenotype of a mutation in a different gene NONE Publication:501706928|PMID:12809608 TAIR 2005-11-01 AT5G13480 locus:2185036 AT5G13480 involved in mRNA polyadenylation GO:0006378 6229 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000519834|UniProtKB:Q585M8|SGD:S000005261 Communication:501741973 2023-06-07 AT5G13480 gene:6532548485 AT5G13480.3 located in nucleus GO:0005634 537 C nucleus ISM predicted protein features AnalysisReference:501780126 rkaundal 2018-08-31 AT5G13480 locus:2185036 AT5G13480 acts upstream of or within embryo development ending in seed dormancy GO:0009793 11994 P multicellular organism development IMP analysis of visible trait NONE Publication:501717446|PMID:16033802 TAIR 2005-11-01 AT5G13480 locus:2185036 AT5G13480 involved in mRNA 3-end processing
• GO:0005847  — part of — mRNA cleavage and polyadenylation specificity factor complex

Germplasm Phenotype:

• CS57  — late flowering; like fca, but less extreme.
• fy-4  — Segregates embryo lethal that arrests at early stages of embryogenesis.

Function-related keywords:

• root ,  root tip ,  shoot axis apex ,  plant embryo ,  plant sperm cell ,  guard cell

Literature:

• EMF genes interact with late-flowering genes to regulate Arabidopsis shoot development.   DOI:  10.1093/oxfordjournals.pcp.a029381 ;  PMID:  9615462
• A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana.   DOI:  10.1007/BF00264213 ;  PMID:  1896021
• Revisiting phase transition during flowering in Arabidopsis.   DOI:  10.1093/pcp/pcg109 ;  PMID:  12941876
• FLC, a repressor of flowering, is regulated by genes in different inductive pathways.   DOI:  10.1046/j.0960-7412.2001.01210.x ;  PMID:  11851919
• CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.   DOI:  10.1111/j.1365-313X.2006.02810.x ;  PMID:  16792691
• Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.   DOI:  10.1073/pnas.0606536103 ;  PMID:  17008405
• Does sequence polymorphism of FLC paralogues underlie flowering time QTL in Brassica oleracea?   DOI:  10.1007/s00122-007-0657-3 ;  PMID:  17938878
• Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.   DOI:  10.1105/tpc.107.055418 ;  PMID:  18223036
• Regulated RNA processing in the control of Arabidopsis flowering.   DOI:  10.1387/ijdb.051995vq ;  PMID:  16096981
• Interaction between the light quality and flowering time pathways in Arabidopsis.   DOI:  10.1111/j.1365-313X.2009.03962.x ;  PMID:  19563438
• Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies.   DOI:  10.1104/pp.109.142729 ;  PMID:  19748916
• The Arabidopsis mutant, fy-1, has an ABA-insensitive germination phenotype.   DOI:  10.1093/jxb/err452 ;  PMID:  22282534
• Systematic identification of functional plant modules through the integration of complementary data sources.   DOI:  10.1104/pp.112.196725 ;  PMID:  22589469
• Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.   DOI:  10.3389/fpls.2015.00829 ;  PMID:  26528302
• Research progress on the autonomous flowering time pathway in Arabidopsis.   DOI:  10.1007/s12298-017-0458-3 ;  PMID:  28878488
• Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis.   DOI:  10.1111/nph.16071 ;  PMID:  31334862
• Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation.   DOI:  10.1105/tpc.18.00545 ;  PMID:  31427469
• The 3' processing of antisense RNAs physically links to chromatin-based transcriptional control.   DOI:  10.1073/pnas.2007268117 ;  PMID:  32541063
• The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis.   DOI:  10.1093/plcell/koab273 ;  PMID:  34791475
• Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.   DOI:  10.1105/tpc.107.055418 ;  PMID:  18223036
• Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies.   DOI:  10.1104/pp.109.142729 ;  PMID:  19748916

Sequences: