Information report for AT5G13330
Gene Details
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Functional Descriptions
- PO:0005052 — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)
- GO:0019760 — acts upstream of or within — glucosinolate metabolic process
- GO:0009737 — acts upstream of or within — response to abscisic acid
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0009651 — acts upstream of or within — response to salt stress
- GO:0045893 — acts upstream of or within — positive regulation of DNA-templated transcription
- GO:0009414 — acts upstream of or within — response to water deprivation
- GO:0071497 — acts upstream of or within — cellular response to freezing
- GO:0009723 — acts upstream of or within — response to ethylene
- GO:0009751 — acts upstream of or within — response to salicylic acid
- GO:0009753 — acts upstream of or within — response to jasmonic acid
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005634 — located in — nucleus
- rap2.6l-1erf114C — Increased production of adventitious roots.
Functional Keywords
Literature and News
- The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. DOI: 10.1073/pnas.94.13.7076 ; PMID: 9192694
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Environmental stress alters genes expression and induces ovule abortion: reactive oxygen species appear as ovules commit to abort. DOI: 10.1007/s00425-005-0010-5 ; PMID: 16133218
- Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades. DOI: 10.1111/j.1365-313X.2005.02530.x ; PMID: 16212609
- Stamen abscission zone transcriptome profiling reveals new candidates for abscission control: enhanced retention of floral organs in transgenic plants overexpressing Arabidopsis ZINC FINGER PROTEIN2. DOI: 10.1104/pp.107.110908 ; PMID: 18192438
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana. DOI: 10.1186/1471-2229-8-91 ; PMID: 18783601
- Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. DOI: 10.1007/s11103-010-9711-7 ; PMID: 21069430
- A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs. DOI: 10.1016/j.ygeno.2012.05.013 ; PMID: 22664253
- RAP2.6L overexpression delays waterlogging induced premature senescence by increasing stomatal closure more than antioxidant enzyme activity. DOI: 10.1007/s11103-012-9936-8 ; PMID: 22661072
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Promoter-based integration in plant defense regulation. DOI: 10.1104/pp.114.248716 ; PMID: 25352272
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. DOI: 10.1007/s10265-015-0705-z ; PMID: 25736731
- Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. DOI: 10.1105/tpc.15.00744 ; PMID: 27650334
- Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. DOI: 10.1016/j.devcel.2016.09.031 ; PMID: 27923776
- Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. DOI: 10.1105/tpc.16.00958 ; PMID: 28827376
- Wounding Triggers Callus Formation via Dynamic Hormonal and Transcriptional Changes. DOI: 10.1104/pp.17.01035 ; PMID: 28904073
- Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. DOI: 10.1105/tpc.17.00805 ; PMID: 29317470
- RAP2.6L and jasmonic acid-responsive genes are expressed upon Arabidopsis hypocotyl grafting but are not needed for cell proliferation related to healing. DOI: 10.1007/s11103-018-0702-4 ; PMID: 29344830
- Nitric oxide responses in Arabidopsis hypocotyls are mediated by diverse phytohormone pathways. DOI: 10.1093/jxb/ery286 ; PMID: 30085082
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- Systematic identification of genes associated with plant growth-defense tradeoffs under JA signaling in Arabidopsis. DOI: 10.1007/s00425-019-03335-8 ; PMID: 31907627
- Jasmonate inhibits adventitious root initiation through repression of CKX1 and activation of RAP2.6L transcription factor in Arabidopsis. DOI: 10.1093/jxb/erab358 ; PMID: 34329421
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Genome-wide analysis of the ERF gene family in Arabidopsis and rice. DOI: 10.1104/pp.105.073783 ; PMID: 16407444
- Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. DOI: 10.1104/pp.106.081240 ; PMID: 16648215
Gene Resources
- UniProt: A0A178UKL8
- EMBL: LUHQ01000005
- AlphaFoldDB: A0A178UKL8
- EnsemblPlants: AT5G13330.1
- Gramene: AT5G13330.1
- KEGG: ath:AT5G13330
- Orthologous matrix: SMAPQPE
- ExpressionAtlas: AT5G13330
- InterPro: IPR001471, IPR016177, IPR036955
- PANTHER: PTHR31190, PTHR31190:SF489
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- SWISS-MODEL: A0A178UKL8
- Conserved Domain Database: cd00018
Sequences
cDNA Sequence
- >AT5G13330.1
CTGGAACAAATACATATACAAATATACCAATAAAAATAAAACTGACCCAATTAGTTTATTTTATTTTTTAGTAAAAAAACAGATGAAAAATTAGAAATGTTGGGTCCGCACTCATTCCTTATTTGTGCATAACACTGCTGCCAAAACATGCGAAGCTAATAAGCTCCCAAAAAAGTTTAAAGATTGAGAAAAAGAAAAAGAGAACTATGAACTCAAAGAACGGTCCTACCCCGCACCATTCCAAAGATTTTAATTAATATTTTTATCATCTATTTTTTCTTGTAGATCCTTCTCTTTATAAAACCCTTTTGTCACCTCTTCTTTCCTCATAACATCACATCATAGCCTAAACCAAAGAAAACCCTTATTTGCGATCCCCACTTGTTGTTCATCACCAAGCCAAGCTCCATGTCCTAGTCACTCCACAGATTCCCTATCATCATCAATTCGTTTCAAACTTAGTTCCTTTCAAAGTCTTGTACATATATACACACACACCTATTATTCTCTTGGTGTGTTTGTGTGTTACATATACGTGTGAGTACATACTTTGTTGTAAAAGTGGATCGGAGGTATGGAAAGGGACCGGTTCCACCGGAAACATCGGCGGCGGCGGATGATAATTCGTCTTGGAACGAGACTGATGTCACCGCCATGGTCTCCGCTCTCAGCCGTGTCATAGAGAATCCGACAGACCCGCCGGTCAAACAAGAGCTTGATAAATCGGATCAACATCAACCAGACCAAGATCAACCAAGAAGAAGACACTATAGAGGCGTAAGGCAGAGACCATGGGGTAAATGGGCGGCAGAAATCCGCGATCCAAAGAAAGCAGCCCGTGTCTGGCTCGGGACTTTCGAGACGGCAGAGGAAGCTGCTTTAGCCTATGACCGAGCTGCCCTCAAATTCAAAGGCACCAAGGCTAAACTGAACTTCCCTGAACGGGTCCAAGGCCCTACTACCACCACAACCATTTCTCATGCACCAAGAGGAGTTAGTGAATCCATGAACTCACCTCCTCCTCGACCTGGTCCACCTTCAACTACTACTACTTCGTGGCCAATGACTTATAACCAGGACATACTTCAATACGCTCAGTTGCTTACGAGTAACAATGAGGTTGATTTATCATACTACACGTCGACTCTCTTCAGTCAACCTTTTTCAACGCCTTCTTCATCTTCTTCTTCCTCCCAACAGACGCAGCAACAGCAGCTACAACAACAACAACAGCAGCGTGAAGAAGAAGAGAAGAATTATGGTTACAATTATTATAACTACCCAAGAGAATAATCTAATTATTATTGTTGGTCGAATCAGTTTTATAAATAGCTATCATAGTTTCATTTTTGGTTTCCGTAACCTTTGTTGCATGGAAAATATGAATGAACGAGGGACATGTGTAACAATTTGTTTGTGTTTCGTAAATGTTAGTTGTATTTGGATTTGCTGAAGTTTGATTTTCTGAGCATAAATCATTTGACGGTCATTCATGAGACATAAATT
CDS Sequence
Protein Sequence