Information report for AT5G13200
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0010029 — acts upstream of or within — regulation of seed germination
- GO:0098755 — acts upstream of or within — maintenance of seed dormancy by absisic acid
- GO:0005737 — located in — cytoplasm
- GO:0003674 — enables — molecular_function
- GO:0009536 — located in — plastid
- GO:0009845 — acts upstream of or within — seed germination
- CS475166 — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:ND,cold:ND,oxidative stress:ND,osmotic stress:no change,salt stress:no change,ABA:no change,hypoxia:ND.
- gen5-2 — Reduced seed set. Embryo arrest at various points after the initial asymmetric division. Abmormal ovules include over proliferation of the chalazal endosperm. Reduced sensitivity to ABA during seed development and germination.
Functional Keywords
Literature and News
- Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant. DOI: 10.1242/jcs.00175 ; PMID: 12432076
- Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis. DOI: 10.1152/physiolgenomics.00201.2003 ; PMID: 14982972
- The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis. DOI: 10.1038/sj.emboj.7600337 ; PMID: 15282545
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms? DOI: 10.1186/gb-2004-5-8-r53 ; PMID: 15287975
- Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. DOI: 10.1111/j.1365-313X.2005.02399.x ; PMID: 15860015
- 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. DOI: 10.1104/pp.105.067058 ; PMID: 16258017
- The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. DOI: 10.1105/tpc.105.035568 ; PMID: 16214899
- A downstream mediator in the growth repression limb of the jasmonate pathway. DOI: 10.1105/tpc.107.050708 ; PMID: 17675405
- Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. DOI: 10.1007/s11103-007-9241-0 ; PMID: 17885809
- Comparative transcriptional profiling and evolutionary analysis of the GRAM domain family in eukaryotes. DOI: 10.1016/j.ydbio.2007.11.031 ; PMID: 18201690
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- GEm-Related 5 (GER5), an ABA and stress-responsive GRAM domain protein regulating seed development and inflorescence architecture. DOI: 10.1016/j.plantsci.2014.03.017 ; PMID: 24767125
Gene Resources
- UniProt: A0A1P8BC46
- EMBL: CP002688
- AlphaFoldDB: A0A1P8BC46
- EnsemblPlants: AT5G13200.2
- Gramene: AT5G13200.2
- ExpressionAtlas: AT5G13200
- InterPro: IPR004182, IPR011993, IPR037848
- PANTHER: PTHR31969
- Gene3D: 2.30.29.30
- OrthoDB: A0A1P8BC46
Sequences
cDNA Sequence
- >AT5G13200.2
CTTATTTATTATCTTCTTCATTACTGTAATTACAAGAAGATTCAGCAAAATGTAATCATTGAATGACACAGAGACTTTTCTAAAATCTTGTATTTATCAAGAACATTCTAAAACCATTATGTGTTCTTATCTTATTGGTTAAGGATTAAACTAAATGTCAAAATTCAGCCTAAAATAGTCCAACTCTTAATCCCAAAGGTAACATCATCAAAACCGCGTTTTATATATGTATAATCCAATCTTATAAATTAAAAAACCAAGTTCAACACAATCCATCACATCCATTTCAATAGAAGACGAAGAACGTTTCAGAATCATCAACCAAATTCAGAAAATTTCAGCCATGACAGGATCACAAGAAGACCAACCTAAGATCATCATTGATCAAGAGCAACCCAAAACTCTAGAAACAGAGCACCAACCAGAACCTTCTTCATCGTCTCCGGATCAGAAGAAATGGGGTACTCACGTGATGGGAGCTCCGGCAGCTCCAGTTGCTCATCCCGATAACCAACAGGCGGCGGCGTGGGTCGCTGGAGATAACCAGCAGACGCAGTACCAACCGTACGTCATCTACTCTCCTGTCGAACATCCAACAACTAACAACCCTCTCGAGCCAGTCATCGGAATGTTCCATACCTGGAGTCGCAAGGCAGAAACCGTCGCACGTAACCTCTGGCACAATCTGAAGACAGGACCGTCTATGTCGGAAACGGCGTGGGGGAAGGTTAATTTGACGGCCAAAGCGATAACAAAAGGAGGATTCGAGTCGCTTTTCAGACAGATTTTCGGAACAGAGCCAAACGAGACGCTGAAGAAAACTTTCGCTTGTTATCTCTCGACGACGACAGGTCCTGTTGCTGGAACTGTCTATCTTTCGAATGCTCGTGTCGCTTTTTGTAGCGATCGTCCTCTGTACTTCACAGCACCTTCTGGTCAAGAATCTTGGAGCTACTACAGGGTAAGTAAAGTCTTGCTTTTGTAAAAGAATGAATTTGGAGATTGTTTTTAACGTAGGTCTAATGTTGTTTGGTGTTTGGTTTTGTGGCAGGTGGTTGTACCTTTGGCGAATGTAGCGACGGTGAATCCGGTGGTGGTGAAAGAGACTCCACCTGAGAAGTATATTCAGTTGACGACGGTGGATGGTCATGACTTCTGGTTCATGGGTTTTGTGAATTATGAGAAGGCTACGCATCATCTGCTGACCAGTGTCTCCGATTTTCAAACCGCACACGGCTCTGTGTCTGGTTAAAACTGTTAGAGTAAAATTCTTTTAGAGGTAATGGAGAAAGTGTTTAAGTGTTTTGAGAGAGTTTTTTAGGAAATAGAACTTTTATTACTTTGCTTTAAACTTTGAATACAACTTCACAACATTGCAACATTTGAGAGGGGGAGGAGGTATTTATAGCCTCCAAACTACAAAATATCTAAAATATTTTAATCCTAAGTCTAGAGAGTTCTT - >AT5G13200.1
CTTATTTATTATCTTCTTCATTACTGTAATTACAAGAAGATTCAGCAAAATGTAATCATTGAATGACACAGAGACTTTTCTAAAATCTTGTATTTATCAAGAACATTCTAAAACCATTATGTGTTCTTATCTTATTGGTTAAGGATTAAACTAAATGTCAAAATTCAGCCTAAAATAGTCCAACTCTTAATCCCAAAGGTAACATCATCAAAACCGCGTTTTATATATGTATAATCCAATCTTATAAATTAAAAAACCAAGTTCAACACAATCCATCACATCCATTTCAATAGAAGACGAAGAACGTTTCAGAATCATCAACCAAATTCAGAAAATTTCAGCCATGACAGGATCACAAGAAGACCAACCTAAGATCATCATTGATCAAGAGCAACCCAAAACTCTAGAAACAGAGCACCAACCAGAACCTTCTTCATCGTCTCCGGATCAGAAGAAATGGGGTACTCACGTGATGGGAGCTCCGGCAGCTCCAGTTGCTCATCCCGATAACCAACAGGCGGCGGCGTGGGTCGCTGGAGATAACCAGCAGACGCAGTACCAACCGTACGTCATCTACTCTCCTGTCGAACATCCAACAACTAACAACCCTCTCGAGCCAGTCATCGGAATGTTCCATACCTGGAGTCGCAAGGCAGAAACCGTCGCACGTAACCTCTGGCACAATCTGAAGACAGGACCGTCTATGTCGGAAACGGCGTGGGGGAAGGTTAATTTGACGGCCAAAGCGATAACAAAAGGAGGATTCGAGTCGCTTTTCAGACAGATTTTCGGAACAGAGCCAAACGAGACGCTGAAGAAAACTTTCGCTTGTTATCTCTCGACGACGACAGGTCCTGTTGCTGGAACTGTCTATCTTTCGAATGCTCGTGTCGCTTTTTGTAGCGATCGTCCTCTGTACTTCACAGCACCTTCTGGTCAAGAATCTTGGAGCTACTACAGGGTAAGTAAAGTCTTGCTTTTGTAAAAGAATGAATTTGGAGATTGTTTTTAACGTAGGTCTAATGTTGTTTGGTGTTTGGTTTTGTGGCAGGTGGTTGTACCTTTGGCGAATGTAGCGACGGTGAATCCGGTGGTGGTGAAAGAGACTCCACCTGAGAAGTATATTCAGTTGACGACGGTGGATGGTCATGACTTCTGGTTCATGGGTTTTGTGAATTATGAGAAGGCTACGCATCATCTGCTGACCAGTGTCTCCGATTTTCAAACCGCACACGGCTCTGTGTCTGGTTAAAACTGTTAGAGTAAAATTCTTTTAGAGGTAATGGAGAAAGTGTTTAAGTGTTTTGAGAGAGTTTTTTAGGAAATAGAACTTTTATTACTTTGCTTTAAACTTTGAATACAACTTCACAACATTGCAACATTTGAGAGGGGGAGGAGGTATTTATAGCCTCCAAACTACAAAATATCTAAAATATTTTAATCCTAAGTCTAGAGAGTTCTT
CDS Sequence
Protein Sequence