Information report for AT5G13190
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0071456 — acts upstream of or within — cellular response to hypoxia
- GO:0034051 — acts upstream of or within — negative regulation of plant-type hypersensitive response
- GO:0008270 — enables — zinc ion binding
- GO:0005886 — located in — plasma membrane
- GO:0005515 — enables — protein binding
Functional Keywords
Literature and News
- Intron retention is a major phenomenon in alternative splicing in Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02172.x ; PMID: 15341630
- Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. DOI: 10.1186/1471-2164-9-113 ; PMID: 18315867
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional responses of Arabidopsis thaliana plants to As (V) stress. DOI: 10.1186/1471-2229-8-87 ; PMID: 18684332
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus. DOI: 10.1186/1471-2229-12-157 ; PMID: 22937923
- Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. DOI: 10.1105/tpc.19.00463 ; PMID: 31519798
Gene Resources
- UniProt: A0A178UGF9
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UGF9
- EnsemblPlants: AT5G13190.1
- Gramene: AT5G13190.1
- KEGG: ath:AT5G13190
- Orthologous matrix: WIQESFA
- ExpressionAtlas: AT5G13190
- InterPro: IPR006629, IPR037519
- PANTHER: PTHR23292, PTHR23292:SF6
- PROSITE: PS51837
- OrthoDB: A0A178UGF9
Sequences
cDNA Sequence
- >AT5G13190.1
CTATCTTCTAGAGGAAAGAAAGAATCAAAGAATCGTTGAAATCAAAATTGCGATTAATCTCAAATTAAGTACACACGCGTAATCGTCAGAGATTTGGAACTTTCCTTGAATCTCCATCGTCTTCCGCGTAATTTCCCTGGGAATTTTCATAGCGGAAAGGGAATTAAATAAATACTCTTCGAATCAGCTTCGTCTGTTTCTCTCGTTGTGATTGATTTGCTTTATCTTCGAAATCGTTGAGTTTGACCGTAAAAACTAAAAACAAAGGAGATGGCGAAAGAGGGAACAACGGTGATCGGAGTTCCATATTACGCGGGGCAGAATCCGTATCAGGCCGGAATTGTGCCGCCGAATGCTATCTATGGTGATCCGTTGGGTGCTCCGATTCAGCAAACGATTTATCGAGACACTCCTGCTCCTTTCAATTGCCTTTATTGCGGCAACACTGGTCTCACCAATCTCAGATCGAAACCTGGTGTAGCTGCTGTTGTTGCTTGCATGATGCCGTTTATGCTTGGTTTCTGCTTTCTCTGCCCTTCAATGGATTGCCTCTGGAACAAACAGCACCATTGCCCTCAGTGTGGGAACAAGGTTGCTGACTTTGAGAAATCAGATCCCTGCCTGGTGATGGATCCGCCACAGTGGAAGCAACCTAGTTTCGCACTCCCAGCATGATAAGATGCATTCTTTTCTCTTGTGATTAATATTGCTTGTGAAGTTGAGTCGTTCTGTTGCATGTACTGGAAAAAAACTAAGATCCAGAATAACCCTATAGAATGTGTGAGAAATGAAATATTTATTCTTCTGTATCGTTTCACTGATTCATGAATGAACCGTCTATTGTCTAGTCTCTTGTGCCTTCTTGGCTATGACTCAACAAGGCTCTTATCTTCACGTAGAGAGATTATTCGTCTTTGAAATTTCACAGGCAGGGATGGTGTGAATCGTGTGATGGGCCAGTGACGAACAAGCTGCCCAGTTTGAACCCGGCTCTCTGGTTTGAGTGTTCAAGATCTATCCTGGTTTTTGGTATATGAACGATGGGGACAGTGCTTGGTTAATCTAGAAACTACATAGGAAAATGACGGATTCATTGGGTTTACAGTTTACTAGACCAGATGTGGTGGGGTTTGGGTACAAAAGGGCCAGACTGGTTTTCGAAGTTGCAAAATGGAAAAACTGATCAGCAGGCGGGATAGGACGGGGCTGGTCCACAGGCTACAGCCTACAGGTTGATCATACATACCTAAAACCTATAATCAGTTTAGGCAGATATAGTAGCCTTACAAGTTAGAACTATCTCAATTCATAAGTCCCAAGTCCCTAAGCCCTCCTTTGCCATGGCTCTTTGTGAAACTAGCACTTTAAGATAATCGCATTTTCTCTCATCTCCTTGGGCCTCTCACAAACTAAATTTTGTGGGCAACTTCAATCTTGGTTTCTAGTATATGTGCAAAGATATTAAAATCAGTATAAAATTAGTTAGTGTTAGTATTTGGAGTTTATAAATTTAAAAATATCTACTACTTCAATCTTGGTTTCTAGTATATGTGCAAAGATATTTATTACTCTTTTCT - >AT5G13190.2
CTATCTTCTAGAGGAAAGAAAGAATCAAAGAATCGTTGAAATCAAAATTGCGATTAATCTCAAATTAAGTACACACGCGTAATCGTCAGAGATTTGGAACTTTCCTTGAATCTCCATCGTCTTCCGCGTAATTTCCCTGGGAATTTTCATAGCGGAAAGGGAATTAAATAAATACTCTTCGAATCAGCTTCGTCTGTTTCTCTCGTTGTGATTGATTTGCTTTATCTTCGAAATCGTTGAGTTTGACCGTAAAAACTAAAAACAAAGGAGATGGCGAAAGAGGGAACAACGGTGATCGGAGTTCCATATTACGCGGGGCAGAATCCGTATCAGGCCGGAATTGTGCCGCCGAATGCTATCTATGGTGATCCGTTGGGTGCTCCGATTCAGCAAACGATTTATCGAGACACTCCTGCTCCTTTCAATTGCCTTTATTGCGGCAACACTGGTCTCACCAATCTCAGATCGAAACCTGGTGTAGCTGCTGTTGTTGCTTGCATGATGCCGTTTATGCTTGGTTTCTGCTTTCTCTGCCCTTCAATGGATTGCCTCTGGAACAAACAGCACCATTGCCCTCAGTGTGGGAACAAGGTTGCTGACTTTGAGAAATCAGATCCCTGCCTGGTGATGGATCCGCCACAGTGGAAGCAACCTAGTTTCGCACTCCCAGCATGATAAGATGCATTCTTTTCTCTTGTGATTAATATTGCTTGTGAAGTTGAGTCGTTCTGTTGCATGTACTGGAAAAAAACTAAGATCCAGAATAACCCTATAGAATGTGTGAGAAATGAAATATTTATTCTTCTGTATCGTTTCACTGATTCATGAATGAACCGTCTATTGTCTAGTCTCTTGTGCCTTCTTGGCTATGACTCAACAAGGCTCTTATCTTCACGTAGAGAGATTATTCGTCTTTGAAATTTCACAGGCAGGGATGGTGTGAATCGTGTGATGGGCCAGTGACGAACAAGCTGCCCAGTTTGAACCCGGCTCTCTGGTTTGAGTGTTCAAGATCTATCCTGGTTTTTGGTATATGAACGATGGGGACAGTGCTTGGTTAATCTAGAAACTACATAGGAAAATGACGGATTCATTGGGTTTACAGTTTACTAGACCAGATGTGGTGGGGTTTGGGTACAAAAGGGCCAGACTGGTTTTCGAAGTTGCAAAATGGAAAAACTGATCAGCAGGCGGGATAGGACGGGGCTGGTCCACAGGCTACAGCCTACAGGTTGATCATACATACCTAAAACCTATAATCAGTTTAGGCAGATATAGTAGCCTTACAAGTTAGAACTATCTCAATTCATAAGTCCCAAGTCCCTAAGCCCTCCTTTGCCATGGCTCTTTGTGAAACTAGCACTTTAAGATAATCGCATTTTCTCTCATCTCCTTGGGCCTCTCACAAACTAAATTTTGTGGGCAACTTCAATCTTGGTTTCTAGTATATGTGCAAAGATATTAAAATCAGTATAAAATTAGTTAGTGTTAGTATTTGGAGTTTATAAATTTAAAAATATCTACTACTTCAATCTTGGTTTCTAGTATATGTGCAAAGATATTTATTACTCTTTTCT
CDS Sequence
Protein Sequence