Gene Details:

  • Gene ID: AT5G13120
  • Gene Symbol: ATCYP20-2, CYP20-2, Pnsl5
  • Gene Name: ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2, Photosynthetic NDH subcomplex L 5
  • Description: cyclophilin 20-2;(source:Araport11)
  • TAIR Accession: locus:2179822
  • Genome: Araport11_genome_release
  • Species: Arabidopsis thaliana

Transcripts:

Plant Ontology Annotations:

  • PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

Gene Ontology:

  • GO:0006457  — involved in — protein folding
  • GO:0009507  — located in — chloroplast
  • GO:0003755  — enables — peptidyl-prolyl cis-trans isomerase activity
  • GO:0009535  — located in — chloroplast thylakoid membrane
  • GO:0005515  — enables — protein binding
  • GO:0009534  — located in — chloroplast thylakoid
  • GO:0043424  — enables — protein histidine kinase binding
  • GO:0009533  — located in — chloroplast stromal thylakoid
  • GO:0009543  — located in — chloroplast thylakoid lumen
  • GO:0009536  — located in — plastid
  • GO:0005737  — is active in — cytoplasm
  • GO:0016018  — enables — cyclosporin A binding
  • GO:0009579  — located in — thylakoid
  • GO:0031977  — located in — thylakoid lumen

Germplasm Phenotype:

  • SALK_024971C  — This mutant had a normal phenotype when grown under standard conditions. The chl/leaf area ratio in this mutant and WT plants were 20.1+/- 0.8 and 19.0 +/- 0.7 respectively. The average chl a/b ratios in this mutant and WT plants were 3.7 +/- 0.0 and 3.6 +/- 0.1 respectively. The levels of representative proteins from various complexes including photosystem (PS)I, PSII, and cytb6f were not altered cyp20-2 thylakoid membranes. However, there was a ~20% reduction in the amount of NDHH, a subunit of the NAD(P)H dehydrogenase complex. There was a slight increase in the photochemical efficiency of PSII in constant growth light conditions and following a two-hour exposure to high light. An marker of NAD(P)H dehydrogenase-mediated reduction of plastoquinone in the dark, measured through the post-illumination rise in chl fluorescence, was also moderately decreased in this mutant.
  • salk_009952 (cyp20-2)  — This mutant had a normal phenotype when grown under standard conditions. The chl/leaf area ratio in this mutant and WT plants were 18.1+/- 0.6 and 19.0 +/- 0.7 respectively. The average chl a/b ratios in this mutant and WT plants were 3.7 +/- 0.0 and 3.6 +/- 0.1 respectively. The levels of representative proteins from various complexes including photosystem (PS)I, PSII, and cytb6f were not altered cyp20-2 thylakoid membranes. However, there was a ~20% reduction in the amount of NDHH, a subunit of the NAD(P)H dehydrogenase complex. There was a slight increase in the photochemical efficiency of PSII in constant growth light conditions. An marker of NAD(P)H dehydrogenase-mediated reduction of plastoquinone in the dark, measured through the post-illumination rise in chl fluorescence, was also moderately decreased in this mutant.

Literature:

Sequences:

cDNA Sequence
  • >AT5G13120.2
    TCACTCGCTCATCGTCACCTTCACCTTCACCTACCATTTTTGCCAACAAACGCGAGCAAGAGTTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCGCTCTCAGCTCCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTGCGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCATCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTGTTCAATCCAATGCTGAGGTGGTTACTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATATAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTGATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTGGCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACTTTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGAATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATACAAATGGAAGTCAGTTCTTTATCTGCACTATTAAGACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTGGTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTGATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAAATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAATGGATTTGTATCCCCTTCTTCCAAAAATTTAAGAAAGAAATAGTATTCCGCTGCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTATAG
  • >AT5G13120.1
    TCACTCGCTCATCGTCACCTTCACCTTCACCTACCATTTTTGCCAACAAACGCGAGCAAGAGTTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCGCTCTCAGCTCCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTGCGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCATCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTGTTCAATCCAATGCTGAGGTGGTTACTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATATAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTGATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTGGCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACTTTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGAATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATACAAATGGAAGTCAGTTCTTTATCTGCACTATTAAGACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTGGTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTGATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAAATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAATGGATTTGTATCCCCTTCTTCCAAAAATTTAAGAAAGAAATAGTATTCCGCTGCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTATAG
CDS Sequence
Protein Sequence