AT5G13120

Gene Details

Gene ID: AT5G13120
Gene Symbol: ATCYP20-2, CYP20-2, Pnsl5
Gene Name: ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2, Photosynthetic NDH subcomplex L 5
Description: cyclophilin 20-2;(source:Araport11)
TAIR Accession: locus:2179822
Genome: Araport11_genome_release
Species: Arabidopsis thaliana

Functional Descriptions

PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

GO:0006457 — involved in — protein folding
GO:0009507 — located in — chloroplast
GO:0003755 — enables — peptidyl-prolyl cis-trans isomerase activity
GO:0009535 — located in — chloroplast thylakoid membrane
GO:0005515 — enables — protein binding
GO:0009534 — located in — chloroplast thylakoid
GO:0043424 — enables — protein histidine kinase binding
GO:0009533 — located in — chloroplast stromal thylakoid
GO:0009543 — located in — chloroplast thylakoid lumen
GO:0009536 — located in — plastid
GO:0005737 — is active in — cytoplasm
GO:0016018 — enables — cyclosporin A binding
GO:0009579 — located in — thylakoid
GO:0031977 — located in — thylakoid lumen

SALK_024971C — This mutant had a normal phenotype when grown under standard conditions. The chl/leaf area ratio in this mutant and WT plants were 20.1+/- 0.8 and 19.0 +/- 0.7 respectively. The average chl a/b ratios in this mutant and WT plants were 3.7 +/- 0.0 and 3.6 +/- 0.1 respectively. The levels of representative proteins from various complexes including photosystem (PS)I, PSII, and cytb6f were not altered cyp20-2 thylakoid membranes. However, there was a ~20% reduction in the amount of NDHH, a subunit of the NAD(P)H dehydrogenase complex. There was a slight increase in the photochemical efficiency of PSII in constant growth light conditions and following a two-hour exposure to high light. An marker of NAD(P)H dehydrogenase-mediated reduction of plastoquinone in the dark, measured through the post-illumination rise in chl fluorescence, was also moderately decreased in this mutant.
salk_009952 (cyp20-2) — This mutant had a normal phenotype when grown under standard conditions. The chl/leaf area ratio in this mutant and WT plants were 18.1+/- 0.6 and 19.0 +/- 0.7 respectively. The average chl a/b ratios in this mutant and WT plants were 3.7 +/- 0.0 and 3.6 +/- 0.1 respectively. The levels of representative proteins from various complexes including photosystem (PS)I, PSII, and cytb6f were not altered cyp20-2 thylakoid membranes. However, there was a ~20% reduction in the amount of NDHH, a subunit of the NAD(P)H dehydrogenase complex. There was a slight increase in the photochemical efficiency of PSII in constant growth light conditions. An marker of NAD(P)H dehydrogenase-mediated reduction of plastoquinone in the dark, measured through the post-illumination rise in chl fluorescence, was also moderately decreased in this mutant.

Functional Keywords

Literature and News

Gene Resources

Sequences

cDNA Sequence

>AT5G13120.2
TCACTCGCTCATCGTCACCTTCACCTTCACCTACCATTTTTGCCAACAAACGCGAGCAAGAGTTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCGCTCTCAGCTCCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTGCGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCATCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTGTTCAATCCAATGCTGAGGTGGTTACTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATATAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTGATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTGGCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACTTTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGAATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATACAAATGGAAGTCAGTTCTTTATCTGCACTATTAAGACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTGGTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTGATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAAATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAATGGATTTGTATCCCCTTCTTCCAAAAATTTAAGAAAGAAATAGTATTCCGCTGCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTATAG
>AT5G13120.1
TCACTCGCTCATCGTCACCTTCACCTTCACCTACCATTTTTGCCAACAAACGCGAGCAAGAGTTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCGCTCTCAGCTCCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTGCGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCATCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTGTTCAATCCAATGCTGAGGTGGTTACTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATATAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTGATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTGGCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACTTTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGAATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATACAAATGGAAGTCAGTTCTTTATCTGCACTATTAAGACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTGGTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTGATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAAATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAATGGATTTGTATCCCCTTCTTCCAAAAATTTAAGAAAGAAATAGTATTCCGCTGCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTATAG

CDS Sequence

Protein Sequence