Information report for AT5G12840
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0048510 — acts upstream of or within — regulation of timing of transition from vegetative to reproductive phase
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0000981 — enables — DNA-binding transcription factor activity, RNA polymerase II-specific
- GO:0055046 — acts upstream of or within — microgametogenesis
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0016602 — part of — CCAAT-binding factor complex
- GO:0005634 — located in — nucleus
- GO:0006357 — involved in — regulation of transcription by RNA polymerase II
- GO:0048316 — acts upstream of or within — seed development
- GO:0010262 — acts upstream of or within — somatic embryogenesis
- CS16131 — Female gametophyte lethality.
Functional Keywords
Literature and News
- Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. DOI: 10.1104/pp.117.3.1015 ; PMID: 9662544
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Global identification of target genes regulated by APETALA3 and PISTILLATA floral homeotic gene action. DOI: 10.1105/tpc.006353 ; PMID: 12509532
- A CDC45 homolog in Arabidopsis is essential for meiosis, as shown by RNA interference-induced gene silencing. DOI: 10.1105/tpc.016865 ; PMID: 14660803
- Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. DOI: 10.1186/gb-2004-5-9-r65 ; PMID: 15345049
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. DOI: 10.1105/tpc.106.043299 ; PMID: 17138697
- AtHAP3b plays a crucial role in the regulation of flowering time in Arabidopsis during osmotic stress. DOI: 10.5483/bmbrep.2007.40.6.1083 ; PMID: 18047807
- Identification and characterization of carrot HAP factors that form a complex with the embryo-specific transcription factor C-LEC1. DOI: 10.1093/jxb/erm238 ; PMID: 18057048
- Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. DOI: 10.1104/pp.108.128108 ; PMID: 18923020
- Arabidopsis transcription factor genes NF-YA1, 5, 6, and 9 play redundant roles in male gametogenesis, embryogenesis, and seed development. DOI: 10.1093/mp/sss061 ; PMID: 22933713
- NFYA1 is involved in regulation of postgermination growth arrest under salt stress in Arabidopsis. DOI: 10.1371/journal.pone.0061289 ; PMID: 23637805
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. DOI: 10.3389/fpls.2016.02045 ; PMID: 28119722
- Ascophyllum nodosum extract mitigates salinity stress in Arabidopsis thaliana by modulating the expression of miRNA involved in stress tolerance and nutrient acquisition. DOI: 10.1371/journal.pone.0206221 ; PMID: 30372454
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: Q1ECD3
- EMBL: BT025801
- AlphaFoldDB: Q1ECD3
- EnsemblPlants: AT5G12840.1, AT5G12840.3, AT5G12840.5
- Gramene: AT5G12840.1, AT5G12840.3, AT5G12840.5
- KEGG: ath:AT5G12840
- Orthologous matrix: EADPYNI
Sequences
cDNA Sequence
- >AT5G12840.1
TCTATTTCGATTTTTCAATAAATTACTTAATATCAAAAACCACAATTCTGGCAAAAAAGAAAAATCCCCAAAATCTAGGGTTTTCTTCTCGCCCAATTTCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTCTCCTTCACCAACTTCTTCTCTGGGTTTTTTGATTTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCAAAAGAGTGCTCTGCTGTGAATTTCCACTGAGATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAGCAGCCGATGATGTATGCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCTCAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCCGAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGCACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAAGGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCAGAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGGGGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCTCGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAGCAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAAGTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGGGCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCAGGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAGACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAATAAAAAAAGCCAAAGCTCTGAGAGGAGAGAGAGACACACACTTTGGCTAATATAATCATTGCCTCAAACCGGCAAATCATTCTTGGCTTTTTCGTTTTTGTGTTTGCTAGTTGTTCTTGTCAGAGTCTCATATTGTGTGGGTTTAACAGTTATGATGAATGTACAAAGAGCGAGTTATGTTAGGTGTTAGATTTTGGAGACAAGAGACTAAGGAATAGCAAGTAGGTCTTGTTTTTATTCTTTGACCTTTTTTTTCTCTTTTGCAAAATTGAAAAATACGTTTGCTTAATCGTTTGCCTTTCTGACCACAAAGTGTTAACAAGGCTATAACAATGCTTCAGATTTGTAGTCAAATTCTCTGTTTTCG - >AT5G12840.2
TCTATTTCGATTTTTCAATAAATTACTTAATATCAAAAACCACAATTCTGGCAAAAAAGAAAAATCCCCAAAATCTAGGGTTTTCTTCTCGCCCAATTTCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTCTCCTTCACCAACTTCTTCTCTGGGTTTTTTGATTTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCAAAAGAGTGCTCTGCTGTGAATTTCCACTGAGATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAGCAGCCGATGATGTATGCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCTCAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCCGAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGCACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAAGGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCAGAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGGGGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCTCGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAGCAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAAGTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGGGCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCAGGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAGACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAATAAAAAAAGCCAAAGCTCTGAGAGGAGAGAGAGACACACACTTTGGCTAATATAATCATTGCCTCAAACCGGCAAATCATTCTTGGCTTTTTCGTTTTTGTGTTTGCTAGTTGTTCTTGTCAGAGTCTCATATTGTGTGGGTTTAACAGTTATGATGAATGTACAAAGAGCGAGTTATGTTAGGTGTTAGATTTTGGAGACAAGAGACTAAGGAATAGCAAGTAGGTCTTGTTTTTATTCTTTGACCTTTTTTTTCTCTTTTGCAAAATTGAAAAATACGTTTGCTTAATCGTTTGCCTTTCTGACCACAAAGTGTTAACAAGGCTATAACAATGCTTCAGATTTGTAGTCAAATTCTCTGTTTTCG - >AT5G12840.4
TCTATTTCGATTTTTCAATAAATTACTTAATATCAAAAACCACAATTCTGGCAAAAAAGAAAAATCCCCAAAATCTAGGGTTTTCTTCTCGCCCAATTTCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTCTCCTTCACCAACTTCTTCTCTGGGTTTTTTGATTTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCAAAAGAGTGCTCTGCTGTGAATTTCCACTGAGATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAGCAGCCGATGATGTATGCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCTCAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCCGAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGCACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAAGGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCAGAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGGGGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCTCGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAGCAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAAGTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGGGCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCAGGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAGACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAATAAAAAAAGCCAAAGCTCTGAGAGGAGAGAGAGACACACACTTTGGCTAATATAATCATTGCCTCAAACCGGCAAATCATTCTTGGCTTTTTCGTTTTTGTGTTTGCTAGTTGTTCTTGTCAGAGTCTCATATTGTGTGGGTTTAACAGTTATGATGAATGTACAAAGAGCGAGTTATGTTAGGTGTTAGATTTTGGAGACAAGAGACTAAGGAATAGCAAGTAGGTCTTGTTTTTATTCTTTGACCTTTTTTTTCTCTTTTGCAAAATTGAAAAATACGTTTGCTTAATCGTTTGCCTTTCTGACCACAAAGTGTTAACAAGGCTATAACAATGCTTCAGATTTGTAGTCAAATTCTCTGTTTTCG - >AT5G12840.3
TCTATTTCGATTTTTCAATAAATTACTTAATATCAAAAACCACAATTCTGGCAAAAAAGAAAAATCCCCAAAATCTAGGGTTTTCTTCTCGCCCAATTTCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTCTCCTTCACCAACTTCTTCTCTGGGTTTTTTGATTTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCAAAAGAGTGCTCTGCTGTGAATTTCCACTGAGATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAGCAGCCGATGATGTATGCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCTCAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCCGAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGCACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAAGGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCAGAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGGGGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCTCGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAGCAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAAGTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGGGCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCAGGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAGACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAATAAAAAAAGCCAAAGCTCTGAGAGGAGAGAGAGACACACACTTTGGCTAATATAATCATTGCCTCAAACCGGCAAATCATTCTTGGCTTTTTCGTTTTTGTGTTTGCTAGTTGTTCTTGTCAGAGTCTCATATTGTGTGGGTTTAACAGTTATGATGAATGTACAAAGAGCGAGTTATGTTAGGTGTTAGATTTTGGAGACAAGAGACTAAGGAATAGCAAGTAGGTCTTGTTTTTATTCTTTGACCTTTTTTTTCTCTTTTGCAAAATTGAAAAATACGTTTGCTTAATCGTTTGCCTTTCTGACCACAAAGTGTTAACAAGGCTATAACAATGCTTCAGATTTGTAGTCAAATTCTCTGTTTTCG - >AT5G12840.5
TCTATTTCGATTTTTCAATAAATTACTTAATATCAAAAACCACAATTCTGGCAAAAAAGAAAAATCCCCAAAATCTAGGGTTTTCTTCTCGCCCAATTTCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTCTCCTTCACCAACTTCTTCTCTGGGTTTTTTGATTTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCAAAAGAGTGCTCTGCTGTGAATTTCCACTGAGATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAGCAGCCGATGATGTATGCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCTCAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCCGAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGCACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAAGGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCAGAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGGGGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCTCGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAGCAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAAGTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGGGCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCAGGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAGACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAATAAAAAAAGCCAAAGCTCTGAGAGGAGAGAGAGACACACACTTTGGCTAATATAATCATTGCCTCAAACCGGCAAATCATTCTTGGCTTTTTCGTTTTTGTGTTTGCTAGTTGTTCTTGTCAGAGTCTCATATTGTGTGGGTTTAACAGTTATGATGAATGTACAAAGAGCGAGTTATGTTAGGTGTTAGATTTTGGAGACAAGAGACTAAGGAATAGCAAGTAGGTCTTGTTTTTATTCTTTGACCTTTTTTTTCTCTTTTGCAAAATTGAAAAATACGTTTGCTTAATCGTTTGCCTTTCTGACCACAAAGTGTTAACAAGGCTATAACAATGCTTCAGATTTGTAGTCAAATTCTCTGTTTTCG
CDS Sequence
Protein Sequence