Information report for AT5G12210
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0010214 — acts upstream of or within — seed coat development
- GO:0140301 — acts upstream of or within — pollen-stigma interaction
- GO:0005968 — part of — Rab-protein geranylgeranyltransferase complex
- GO:0010183 — acts upstream of or within — pollen tube guidance
- GO:0048364 — involved in — root development
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0018344 — involved in — protein geranylgeranylation
- GO:0048316 — acts upstream of or within — seed development
- GO:0010315 — acts upstream of or within — auxin export across the plasma membrane
- GO:0009960 — acts upstream of or within — endosperm development
- GO:0004663 — enables — Rab geranylgeranyltransferase activity
- GO:0009553 — acts upstream of or within — embryo sac development
- GO:0009555 — involved in — pollen development
Functional Keywords
Literature and News
- Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. DOI: 10.1023/a:1023005504702 ; PMID: 12777052
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme. DOI: 10.1186/1471-2164-9-S2-S6 ; PMID: 18831797
- Arabidopsis RAB geranylgeranyl transferase beta-subunit mutant is constitutively photomorphogenic, and has shoot growth and gravitropic defects. DOI: 10.1111/j.1365-313X.2010.04172.x ; PMID: 20180921
- Rab-dependent vesicular traffic affects female gametophyte development in Arabidopsis. DOI: 10.1093/jxb/eraa430 ; PMID: 32939545
Gene Resources
- UniProt: F4JZH8
- EMBL: CP002688
- AlphaFoldDB: F4JZH8
- EnsemblPlants: AT5G12210.2
- Gramene: AT5G12210.2
- Orthologous matrix: VKRCQCP
- ExpressionAtlas: AT5G12210
- InterPro: IPR001330, IPR008930, IPR026873
- PANTHER: PTHR11774, PTHR11774:SF16
- SUPFAM: SSF48239
- Gene3D: 1.50.10.20
- OrthoDB: F4JZH8
- SWISS-MODEL: F4JZH8
- Conserved Domain Database: cd02894
Sequences
cDNA Sequence
- >AT5G12210.2
AACTAGAGAATGTTTGAAGCTGAGGGGGTGGACTAGATTAAAATCCTAAGCTAAGGAAGAAGAAGGTTTTGATGTTAGTGAAAGGTTAGATTTTTTATTCCGATCTTGGTCAGTCTCCTCCAATCGTGATTTCTCTTCTGGATCCAAGCTGATGAGCTCTACGTCTTCCTCCCAGATGGTTCAGCTCGTAGCTGACAAGCATGTACGTTACATTCTGATGGCAGAAAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCATACTGGGGACTCACCACTCTCGACTTACTTGACAAGCTCGGCTGTGTTTCTGAAGAGGAAGTCATTTCATGGCTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTTATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCTGTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCCGTTAAGTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAGGACAAATTTTCTGCTGCGTTGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATAAGGACTCACTTGGTTGGTGGTTATGTGAAAGACAATTAAAGGCTGGGGGCTTAAATGGACGTCCTGAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGATAGATAGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTCTGGACTGTCAGGATTTGGACAACGGAGGCATCTCAGACCGACCCGAGGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCAGCCTATGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGACTGCAATGGGTATATGATCTTAATGGTCAAACAATATGGCCGCAAGGCTCTCTATATGATTTGTTCATTGAATAATTTACTTGGCGGTTTTAGAAGTTATGTATGCTCAAGGAGGAGGAGATTGCAATTTGGGTATGGGAACAGTCTCAAATCTCAATGTTGTATAACTTGCTACATTATTGAGGTTTCTGATGTAATGGAAACGAAGTTGTGTTGCTGCTACATTATATAAATCACATTAATGTGTTTTTTCTCCACACTTTTCATTCTG - >AT5G12210.1
AACTAGAGAATGTTTGAAGCTGAGGGGGTGGACTAGATTAAAATCCTAAGCTAAGGAAGAAGAAGGTTTTGATGTTAGTGAAAGGTTAGATTTTTTATTCCGATCTTGGTCAGTCTCCTCCAATCGTGATTTCTCTTCTGGATCCAAGCTGATGAGCTCTACGTCTTCCTCCCAGATGGTTCAGCTCGTAGCTGACAAGCATGTACGTTACATTCTGATGGCAGAAAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCATACTGGGGACTCACCACTCTCGACTTACTTGACAAGCTCGGCTGTGTTTCTGAAGAGGAAGTCATTTCATGGCTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTTATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCTGTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCCGTTAAGTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAGGACAAATTTTCTGCTGCGTTGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATAAGGACTCACTTGGTTGGTGGTTATGTGAAAGACAATTAAAGGCTGGGGGCTTAAATGGACGTCCTGAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGATAGATAGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTCTGGACTGTCAGGATTTGGACAACGGAGGCATCTCAGACCGACCCGAGGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCAGCCTATGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGACTGCAATGGGTATATGATCTTAATGGTCAAACAATATGGCCGCAAGGCTCTCTATATGATTTGTTCATTGAATAATTTACTTGGCGGTTTTAGAAGTTATGTATGCTCAAGGAGGAGGAGATTGCAATTTGGGTATGGGAACAGTCTCAAATCTCAATGTTGTATAACTTGCTACATTATTGAGGTTTCTGATGTAATGGAAACGAAGTTGTGTTGCTGCTACATTATATAAATCACATTAATGTGTTTTTTCTCCACACTTTTCATTCTG
CDS Sequence
Protein Sequence