Information report for AT5G11320
Gene Details
|
|
Functional Descriptions
- PO:0000229 — flower meristem — floral meristem (exact), mersitema floral (Spanish, exact), 花芽分裂組織 (Japanese, exact), floral apical meristem (related), Poaceae floret meristem (narrow), ear floret meristem (narrow), floret meristem (narrow), tassel floret meristem (narrow)
- PO:0006339 — juvenile vascular leaf — hoja juvenil (Spanish, exact), 維管束系幼葉 (Japanese, exact)
- PO:0009015 — portion of vascular tissue — porción de tejido vascular (Spanish, exact), vascular tissue (exact), 維管束細胞の一部 (Japanese, exact), vascular system (related)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020144 — apical meristem — AM (exact), meristema apical (Spanish, exact), 頂端分裂組織 (Japanese, exact), primary meristem (related), promeristem (broad)
- npy1-1; yuc1; yuc4-1 — The triple mutant fails to produce cotyledons. True leaves develop, but show aberrant phyllotaxy. The mutant also fails to produce flowers on its pin-formed primary and lateral inflorescences. These phenotypes cannot be attributed to changes in the patterns of PIN1, PID, or MP transcription in the inflorescence.
- yuc1; yuc4-1; pid-101 — This triple mutant fails to produce cotyledons, a defect that can first be observed at the early heart embryo developmental stage. True leaves develop, but show aberrant phyllotaxy. The mutant forms a normal hypocotyl and roots and produces a normal apical hook in the dark.
Functional Keywords
Literature and News
- STY1 regulates auxin homeostasis and affects apical-basal patterning of the Arabidopsis gynoecium. DOI: 10.1111/j.1365-313X.2006.02775.x ; PMID: 16740145
- Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition. DOI: 10.1111/j.1365-313X.2006.02900.x ; PMID: 17059406
- Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. DOI: 10.1105/tpc.107.053009 ; PMID: 17704214
- NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis. DOI: 10.1073/pnas.0708506104 ; PMID: 18000043
- Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis. DOI: 10.1073/pnas.0712364105 ; PMID: 18287041
- NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. DOI: 10.1073/pnas.0809761106 ; PMID: 19075219
- The NGATHA genes direct style development in the Arabidopsis gynoecium. DOI: 10.1105/tpc.109.065508 ; PMID: 19435937
- Auxin can act independently of CRC, LUG, SEU, SPT and STY1 in style development but not apical-basal patterning of the Arabidopsis gynoecium. DOI: 10.1111/j.1469-8137.2008.02625.x ; PMID: 18811619
- SCI1, the first member of the tissue-specific inhibitors of CDK (TIC) class, is probably connected to the auxin signaling pathway. DOI: 10.4161/psb.7.1.18525 ; PMID: 22301969
- Isolation and characterization of two YUCCA flavin monooxygenase genes from cultivated strawberry (Fragaria × ananassa Duch.). DOI: 10.1007/s00299-012-1258-4 ; PMID: 22491872
- SPL8 and miR156-targeted SPL genes redundantly regulate Arabidopsis gynoecium differential patterning. DOI: 10.1111/tpj.12221 ; PMID: 23621152
- LEAFY COTYLEDON2 (LEC2) promotes embryogenic induction in somatic tissues of Arabidopsis, via YUCCA-mediated auxin biosynthesis. DOI: 10.1007/s00425-013-1892-2 ; PMID: 23722561
- The importance of localized auxin production for morphogenesis of reproductive organs and embryos in Arabidopsis. DOI: 10.1093/jxb/erv256 ; PMID: 26019252
- TCP15 modulates cytokinin and auxin responses during gynoecium development in Arabidopsis. DOI: 10.1111/tpj.12992 ; PMID: 26303297
- NCP1/AtMOB1A Plays Key Roles in Auxin-Mediated Arabidopsis Development. DOI: 10.1371/journal.pgen.1005923 ; PMID: 26942722
- YUCCA-mediated auxin biogenesis is required for cell fate transition occurring during de novo root organogenesis in Arabidopsis. DOI: 10.1093/jxb/erw213 ; PMID: 27255928
- FUSCA3 interacting with LEAFY COTYLEDON2 controls lateral root formation through regulating YUCCA4 gene expression in Arabidopsis thaliana. DOI: 10.1111/nph.14313 ; PMID: 27878992
- Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. DOI: 10.1105/tpc.16.00640 ; PMID: 28576846
- Cytokinin-Auxin Crosstalk in the Gynoecial Primordium Ensures Correct Domain Patterning. DOI: 10.1104/pp.17.00805 ; PMID: 28894023
- SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis. DOI: 10.15252/embj.201797499 ; PMID: 29764982
- Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. DOI: 10.1038/s41467-018-07763-0 ; PMID: 30538233
- Ontogenetic Changes in Auxin Biosynthesis and Distribution Determine the Organogenic Activity of the Shoot Apical Meristem in pin1 Mutants. DOI: 10.3390/ijms20010180 ; PMID: 30621327
- A Positive Feedback Loop Comprising LHW-TMO5 and Local Auxin Biosynthesis Regulates Initial Vascular Development in Arabidopsis Roots. DOI: 10.1093/pcp/pcz156 ; PMID: 31392340
- Auxin signaling modulates LATERAL ROOT PRIMORDIUM1 (LRP1) expression during lateral root development in Arabidopsis. DOI: 10.1111/tpj.14520 ; PMID: 31483536
- An Improved Recombineering Toolset for Plants. DOI: 10.1105/tpc.19.00431 ; PMID: 31666295
- YUCCA4 overexpression modulates auxin biosynthesis and transport and influences plant growth and development via crosstalk with abscisic acid in Arabidopsis thaliana. DOI: 10.1590/1678-4685-GMB-2019-0221 ; PMID: 32105289
- Expression of the auxin biosynthetic genes YUCCA1 and YUCCA4 is dependent on the boundary regulators CUP-SHAPED COTYLEDON genes in the Arabidopsis thaliana embryo. DOI: 10.5511/plantbiotechnology.21.0924a ; PMID: 35800963
- and transport-mediated dynamic auxin distribution during seed development controls seed size in Arabidopsis. DOI: 10.1111/tpj.16109 ; PMID: 36648165
- Local phytochrome signalling limits root growth in light by repressing auxin biosynthesis. DOI: 10.1093/jxb/erad163 ; PMID: 37140032
- NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis. DOI: 10.1073/pnas.0708506104 ; PMID: 18000043
Gene Resources
- UniProt: A0A178UJ31
- EMBL: CACRSJ010000110, LUHQ01000005
- AlphaFoldDB: A0A178UJ31
- EnsemblPlants: AT5G11320.1
- Gramene: AT5G11320.1
- KEGG: ath:AT5G11320
- ExpressionAtlas: AT5G11320
- InterPro: IPR036188, IPR050982
- PANTHER: PTHR43539, PTHR43539:SF78
- SUPFAM: SSF51905
- PROSITE: PS51257
- Gene3D: 3.50.50.60
- SWISS-MODEL: A0A178UJ31
Sequences
cDNA Sequence
- >AT5G11320.1
AACACACACACACAAATCCTTTCCTTTTCTCTCACGCCTTCTCTCTCTCTCTCACTCACTCTCGAGCATTTACACCACCTCATCTTACGTGGTCTCTATATAATTTCCAACTTGGTTTCTTGGTTTTTCCCGAGAAACAATCAAAAGAAGACCCTAAAACAGGACACTTCTTAGGTGCATGTGTGTGTGATCGTCAGAGAAAGATAAAGACACTTTCCTCTTCCTTCCTTCTTCTTCTTTCTTACTCTCTCTCTCTCTCTTTCGCTTTTATTAGTCGACATGGGCACTTGTAGAGAATCAGAACCTACTCAAATCTTCGTTCCTGGTCCGATCATCGTCGGAGCCGGGCCTTCCGGTCTAGCCGTAGCGGCTTGTTTGTCAAACCGAGGCGTACCATCGGTTATCCTCGAGAGAACCGATTGTTTAGCTTCTTTATGGCAAAAAAGAACCTACGACCGTCTCAAACTCCATCTCCCTAAACACTTTTGCGAGCTTCCTCTTATGCCTTTCCCTAAAAACTTCCCCAAATACCCATCCAAGCAACTATTCATCTCCTACGTTGAGTCCTACGCTGCCCGGTTTAATATCAAACCGGTATTTAACCAAACCGTCGAGAAAGCAGAGTTCGATGACGCATCTGGTCTATGGAATGTGAAGACGCAAGACGGTGTATACACATCCACGTGGCTGGTGGTTGCCACAGGGGAAAACGCTGAACCGGTGTTTCCGAACATACCCGGTTTAAAGAAGTTTACTGGACCGGTTGTTCACACCAGTGCGTACAAGTCCGGTTCGGCATTCGCAAACCGGAAGGTTTTGGTGGTTGGTTGTGGAAATTCCGGTATGGAGGTCAGCTTGGATCTTTGTAGATACAATGCTCTGCCTCATATGGTCGTTAGAAACTCTGTACATGTATTACCAAGAGACTTTTTTGGTCTATCAACATTTGGAATAGCCATGACACTACTGAAATGGTTTCCTCTAAAGCTGGTGGACAAATTTCTCCTACTTCTTGCTAATTCTACGTTGGGCAATACCGACCTTTTAGGCCTTCGACGACCTAAGACCGGACCAATTGAGCTAAAGAACGTCACCGGTAAAACTCCCGTTCTTGATGTCGGTGCCATTTCTTTAATCCGATCAGGACAAATTAAAGTGACGCAAGCCGTGAAAGAAATAACGAGGAACGGGGCAAAGTTTCTGAATGGGAAAGAAATTGAATTCGACTCCATAATATTAGCGACTGGGTATAAGAGTAATGTACCCGATTGGCTTAAGGAGAATAGTTTTTTCACAAAAGAAGGAATGCCAAAAACGCCGTTTCCTAACGGATGGAAAGGAGAGAAGGGACTATACACGGTGGGTTTCACGAGAAGAGGACTTTCGGGAACAGCCTATGACGCCGTTAAGATCGCTGAGGATATAACAGACCAATGGATGAAATTTAACGGTCCGTTGAGTTGTAGGAATATTTGTAGTTCCCATATTATTCATCTTCATTTCAATAAATCCTAATAATTTGGTTCTTTTCTTGTTCTCAATTTTGACTTGTATCTTTTTTCATGGTCGCTAATGAAGTTAGTTAGCTTTGTTGTTTATTTAATATTGAGTAGTTTCCTCATTTTCCAAGCTTCCATGCGTTGTAAATTTGGTAATATTTACTTCTTTGGCTGTAAAATAATATCTAAATTTTGGTG - >AT5G11320.2
AACACACACACACAAATCCTTTCCTTTTCTCTCACGCCTTCTCTCTCTCTCTCACTCACTCTCGAGCATTTACACCACCTCATCTTACGTGGTCTCTATATAATTTCCAACTTGGTTTCTTGGTTTTTCCCGAGAAACAATCAAAAGAAGACCCTAAAACAGGACACTTCTTAGGTGCATGTGTGTGTGATCGTCAGAGAAAGATAAAGACACTTTCCTCTTCCTTCCTTCTTCTTCTTTCTTACTCTCTCTCTCTCTCTTTCGCTTTTATTAGTCGACATGGGCACTTGTAGAGAATCAGAACCTACTCAAATCTTCGTTCCTGGTCCGATCATCGTCGGAGCCGGGCCTTCCGGTCTAGCCGTAGCGGCTTGTTTGTCAAACCGAGGCGTACCATCGGTTATCCTCGAGAGAACCGATTGTTTAGCTTCTTTATGGCAAAAAAGAACCTACGACCGTCTCAAACTCCATCTCCCTAAACACTTTTGCGAGCTTCCTCTTATGCCTTTCCCTAAAAACTTCCCCAAATACCCATCCAAGCAACTATTCATCTCCTACGTTGAGTCCTACGCTGCCCGGTTTAATATCAAACCGGTATTTAACCAAACCGTCGAGAAAGCAGAGTTCGATGACGCATCTGGTCTATGGAATGTGAAGACGCAAGACGGTGTATACACATCCACGTGGCTGGTGGTTGCCACAGGGGAAAACGCTGAACCGGTGTTTCCGAACATACCCGGTTTAAAGAAGTTTACTGGACCGGTTGTTCACACCAGTGCGTACAAGTCCGGTTCGGCATTCGCAAACCGGAAGGTTTTGGTGGTTGGTTGTGGAAATTCCGGTATGGAGGTCAGCTTGGATCTTTGTAGATACAATGCTCTGCCTCATATGGTCGTTAGAAACTCTGTACATGTATTACCAAGAGACTTTTTTGGTCTATCAACATTTGGAATAGCCATGACACTACTGAAATGGTTTCCTCTAAAGCTGGTGGACAAATTTCTCCTACTTCTTGCTAATTCTACGTTGGGCAATACCGACCTTTTAGGCCTTCGACGACCTAAGACCGGACCAATTGAGCTAAAGAACGTCACCGGTAAAACTCCCGTTCTTGATGTCGGTGCCATTTCTTTAATCCGATCAGGACAAATTAAAGTGACGCAAGCCGTGAAAGAAATAACGAGGAACGGGGCAAAGTTTCTGAATGGGAAAGAAATTGAATTCGACTCCATAATATTAGCGACTGGGTATAAGAGTAATGTACCCGATTGGCTTAAGGAGAATAGTTTTTTCACAAAAGAAGGAATGCCAAAAACGCCGTTTCCTAACGGATGGAAAGGAGAGAAGGGACTATACACGGTGGGTTTCACGAGAAGAGGACTTTCGGGAACAGCCTATGACGCCGTTAAGATCGCTGAGGATATAACAGACCAATGGATGAAATTTAACGGTCCGTTGAGTTGTAGGAATATTTGTAGTTCCCATATTATTCATCTTCATTTCAATAAATCCTAATAATTTGGTTCTTTTCTTGTTCTCAATTTTGACTTGTATCTTTTTTCATGGTCGCTAATGAAGTTAGTTAGCTTTGTTGTTTATTTAATATTGAGTAGTTTCCTCATTTTCCAAGCTTCCATGCGTTGTAAATTTGGTAATATTTACTTCTTTGGCTGTAAAATAATATCTAAATTTTGGTG
CDS Sequence
Protein Sequence