Information report for AT5G10560
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0020048 — microspore — microspora (Spanish, exact), 小胞子 (Japanese, exact), Poaceae microspore (narrow), Zea microspore (narrow)
- GO:0045493 — involved in — xylan catabolic process
- GO:0009044 — enables — xylan 1,4-beta-xylosidase activity
- GO:0005773 — located in — vacuole
- GO:0000325 — located in — plant-type vacuole
- GO:0031222 — involved in — arabinan catabolic process
- GO:0046556 — enables — alpha-L-arabinofuranosidase activity
- GO:0005829 — located in — cytosol
Functional Keywords
- root , vascular leaf , stem , microspore , root
Literature and News
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana. DOI: 10.1093/pcp/pci223 ; PMID: 16267099
- An in vivo expression system for the identification of cargo proteins of vacuolar sorting receptors in Arabidopsis culture cells. DOI: 10.1111/tpj.12257 ; PMID: 23738689
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Expression of beta-galactosidase and beta-xylosidase genes during microspore and pollen development. DOI: 10.1007/s00425-004-1409-0 ; PMID: 15517348
- A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. DOI: 10.1074/mcp.M600250-MCP200 ; PMID: 17151019
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A654FZY6
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654FZY6
- EnsemblPlants: AT5G10560.1
- Gramene: AT5G10560.1
- KEGG: ath:AT5G10560
- Orthologous matrix: HMAIGTT
- ExpressionAtlas: AT5G10560
- InterPro: IPR001764, IPR002772, IPR013783
- PANTHER: PTHR42721, PTHR42721:SF1
- SUPFAM: SSF51445, SSF52279
- Gene3D: 2.60.40.10, 3.20.20.300, 3.40.50.1700
- SWISS-MODEL: A0A654FZY6
Sequences
cDNA Sequence
- >AT5G10560.1
ACTCTTCTCTACAGATTTATTTTCCTCCAAAATATGAATCTTCAGTTGACTCTAATCTCCTTACTCTTCTTCACTTCCGCCATAGCTGAAACCTTCAAAAACCTCGATTCTCATCCACAGTTCCCTTGTAAACCTCCTCATTTTAGCTCTTATCCCTTCTGCAATGTCTCTTTATCCATAAAACAACGAGCAATTTCTCTCGTCTCCCTCCTCATGCTCCCAGAGAAGATAGGTCAGCTCTCAAACACAGCTGCTTCAGTACCCCGTCTCGGTATTCCTCCGTACGAGTGGTGGTCGGAGTCTTTACACGGACTCGCCGATAACGGTCCCGGAGTTTCCTTCAACGGTTCGATCTCCGCCGCTACTAGTTTTCCTCAGGTAATCGTATCTGCTGCATCTTTCAATAGAACGCTATGGTACGAGATTGGATCTGCTGTTGCGGTGGAAGGTCGGGCTATGTACAACGGTGGTCAAGCTGGGTTGACGTTTTGGGCTCCGAATATAAATGTGTTTAGGGATCCGAGATGGGGAAGAGGACAGGAGACTCCTGGTGAGGATCCGAAGGTAGTTTCCGAGTATGGAGTTGAGTTCGTTAGAGGGTTTCAAGAGAAGAAGAAAAGGAAGGTTTTGAAAAGAAGATTTAGTGATGATGTTGATGATGATCGTCATGATGATGATGCTGATGGGAAGCTCATGTTATCTGCTTGTTGTAAGCATTTCACTGCCTATGATTTGGAAAAATGGGGGAATTTCACTAGATACGACTTCAATGCTGTGGTCACAGAACAGGACATGGAAGACACATATCAGCCCCCATTTGAGACTTGTATAAGAGATGGTAAAGCTAGCTGCTTGATGTGTTCATATAATGCAGTTAATGGGGTCCCTGCTTGTGCGCAAGGAGACTTATTACAAAAAGCTCGAGTTGAGTGGGGATTTGAAGGGTACATTACATCAGACTGTGATGCTGTGGCAACTATTTTTGCGTACCAAGGATATACCAAGTCACCTGAGGAAGCTGTTGCTGATGCCATAAAAGCAGGGGTGGATATAAATTGTGGAACATACATGCTTCGGCACACACAATCTGCGATTGAGCAGGGGAAGGTGAGCGAAGAACTAGTAGACCGAGCTCTGCTAAATCTCTTTGCTGTTCAACTTCGTCTTGGACTTTTTGATGGTGATCCAAGAAGAGGACAGTACGGAAAGTTAGGATCAAATGACATTTGTAGCTCAGACCACAGAAAATTGGCACTGGAAGCAACAAGACAGGGTATCGTGCTCCTGAAAAATGATCACAAGTTGTTGCCTTTGAACAAAAACCATGTTTCTTCATTAGCAATCGTTGGTCCAATGGCGAATAATATAAGCAATATGGGCGGTACTTATACAGGAAAGCCGTGTCAACGAAAGACTTTGTTCACGGAACTTCTGGAGTATGTGAAGAAGACATCTTATGCGTCTGGTTGCTCAGACGTGTCTTGTGATTCTGATACCGGATTTGGAGAAGCTGTGGCCATCGCCAAGGGAGCGGATTTTGTCATAGTAGTTGCAGGATTAGATCTCTCTCAAGAAACCGAGGATAAGGATCGAGTTAGTCTTTCTTTGCCTGGTAAACAGAAAGATCTTGTGTCTCATGTTGCTGCTGTGAGCAAAAAACCGGTGATTCTTGTTCTAACCGGTGGAGGACCAGTGGATGTAACGTTTGCTAAAAATGACCCGAGAATCGGAAGCATTATCTGGATTGGTTATCCAGGTGAAACTGGTGGACAAGCACTCGCTGAAATCATATTTGGAGACTTCAATCCAGGTGGTAGATTACCGACAACGTGGTATCCGGAGTCATTCACGGATGTGGCAATGTCGGATATGCACATGAGAGCCAATTCATCTCGTGGATATCCAGGAAGAACGTACAGATTCTATACCGGACCTCAAGTTTACAGTTTTGGGACCGGTTTAAGCTACACGAAATTCGAGTACAAGATCTTATCAGCACCAATCAGACTTAGCTTATCGGAACTTCTTCCACAACAGTCTTCTCACAAGAAACAACTACAACATGGAGAAGAACTTCGATACTTACAGCTCGATGATGTGATTGTTAACTCTTGCGAATCTCTGCGGTTTAACGTTCGTGTTCATGTGAGCAATACCGGAGAAATCGACGGTAGTCATGTTGTGATGCTGTTTTCGAAAATGCCACCGGTTTTATCTGGTGTTCCGGAGAAGCAGCTGATTGGTTATGATCGTGTTCATGTTCGTTCCAATGAAATGATGGAAACAGTGTTCGTAATCGATCCTTGCAAGCAGCTAAGCGTAGCGAATGATGTCGGGAAGAGAGTGATTCCTCTGGGGAGTCATGTCTTGTTCTTGGGAGATTTACAACATTCTCTCTCTGTTGAATTCTAAAACACTGTAATCCGAAAAAATTTCATTACTGTTTATTTCCTTCTAGAATGATCTATATATATACTTTTGAAACTACAGAAACAACCAGGTCAGCTAAAGAGAGTGTGACACGCACGCAATTTTTCTGCGCGTGTGATTGTGGTAGAGATTAATCAACAGAGAAAAGTGAGCTGTCGTGGGTCCCACGATATATCAGGGAAATGGTCCCCACATCTGTTGTTGTGTTTGGGGATAGACGCAACATTTATTATTATTTACGGTTATGACCTCCTTTTTCCAGTATACAACCTGACACCTCATAATATGTGTTTTTAATCAAGGATCCGACGGCC
CDS Sequence
Protein Sequence