Gene Details:

• Gene ID: AT5G10390
• Gene Symbol: H3.1, HTR13
• Gene Name: histone 3.1
• Description: Histone superfamily protein;(source:Araport11)
• TAIR Accession: locus:2142439
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G10390.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009049  — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)

Gene Ontology:

• GO:0009059  — acts upstream of or within — macromolecule biosynthetic process
• GO:0005886  — located in — plasma membrane
• GO:0005634  — located in — nucleus
• GO:0019219  — acts upstream of or within — regulation of nucleobase-containing compound metabolic process
• GO:0009892  — acts upstream of or within — negative regulation of metabolic process
• GO:0009314  — acts upstream of or within — response to radiation

Germplasm Phenotype:

• N574285  — No visible phenotype.

Function-related keywords:

• root ,  flower ,  inflorescence

Literature:

• Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species.   DOI:  10.1046/j.1365-313x.2003.01706.x ;  PMID:  12662315
• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.   DOI:  10.1111/j.1365-313X.2005.02554.x ;  PMID:  16262706
• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• BOLITA, an Arabidopsis AP2/ERF-like transcription factor that affects cell expansion and proliferation/differentiation pathways.   DOI:  10.1007/s11103-006-9059-1 ;  PMID:  17096212
• Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants.   DOI:  10.1105/tpc.106.042903 ;  PMID:  17496122
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.   DOI:  10.1104/pp.108.126979 ;  PMID:  18805951
• Zygotic resetting of the HISTONE 3 variant repertoire participates in epigenetic reprogramming in Arabidopsis.   DOI:  10.1016/j.cub.2010.11.012 ;  PMID:  21093266
• Differential association of Arabidopsis telomeres and centromeres with histone H3 variants.   DOI:  10.1038/srep01202 ;  PMID:  23383372
• Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.   DOI:  10.1126/science.1248357 ;  PMID:  24626927
• The H3 chaperone function of NASP is conserved in Arabidopsis.   DOI:  10.1111/tpj.13263 ;  PMID:  27402088
• Genome-wide identification, evolutionary, and expression analyses of histone H3 variants in plants.   DOI:  10.1155/2015/341598 ;  PMID:  25815311
• Molecular basis for the methylation specificity of ATXR5 for histone H3.   DOI:  10.1093/nar/gkx224 ;  PMID:  28383693
• Gene modification by fast-track recombineering for cellular localization and isolation of components of plant protein complexes.   DOI:  10.1111/tpj.14450 ;  PMID:  31276249
• A unified phylogeny-based nomenclature for histone variants.   DOI:  10.1186/1756-8935-5-7 ;  PMID:  22650316
• H3.1 Eviction Marks Female Germline Precursors in Arabidopsis.   DOI:  10.3390/plants9101322 ;  PMID:  33036297
• Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction.   DOI:  10.1111/tpj.15145 ;  PMID:  33368779
• H3.1K27me1 maintains transcriptional silencing and genome stability by preventing GCN5-mediated histone acetylation.   DOI:  10.1093/plcell/koaa027 ;  PMID:  33793815
• The Histone Chaperone HIRA Is a Positive Regulator of Seed Germination.   DOI:  10.3390/ijms22084031 ;  PMID:  33919775
• Epigenetic features drastically impact CRISPR-Cas9 efficacy in plants.   DOI:  10.1093/plphys/kiac285 ;  PMID:  35689624
• Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis.   DOI:  10.1038/s41467-022-34648-0 ;  PMID:  36379930
• Mitotic inheritance of genetic and epigenetic information via the histone H3.1 variant.   DOI:  10.1016/j.pbi.2023.102401 ;  PMID:  37302254
• Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.   DOI:  10.1111/j.1365-313X.2005.02554.x ;  PMID:  16262706

Sequences: