Information report for AT5G09900
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000003 — whole plant — planta entera (Spanish, exact), 植物体全体 (Japanese, exact), clonal colony (related), colony (related), bush (narrow), frutex (narrow), frutices (narrow), gametophyte (narrow), herb (narrow), liana (narrow), prothalli (narrow), prothallium (narrow), prothallus (narrow), seedling (narrow), shrub (narrow), sporophyte (narrow), suffrutex (narrow), suffrutices (narrow), tree (narrow), vine (narrow), woody clump (narrow), genet (broad), ramet (broad)
- GO:0000502 — part of — proteasome complex
- GO:0005634 — located in — nucleus
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0006511 — acts upstream of or within — ubiquitin-dependent protein catabolic process
- GO:0003674 — enables — molecular_function
- GO:0005737 — is active in — cytoplasm
- GO:0009506 — located in — plasmodesma
- rpn5a-1 — Mutants display plieotropic effects on development. When grown in continuous light seedlings produce lanceolate shaped leaves with fewer numbers of cells. In long days- the rosettes are comprised of clusters of abnormally shaped leaves. Floral morphology is normal but the anthers do not shed pollen. Embryogenesis is defective. Mutant embryos are delayed in development and have fewer cells.
- rpn5a-2/rpn5b-2 — Cannot recover homozygous double mutant.
Functional Keywords
Literature and News
- Structure and functional analysis of the 26S proteasome subunits from plants. DOI: 10.1023/a:1006926322501 ; PMID: 10363660
- Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms. DOI: 10.1074/jbc.M311977200 ; PMID: 14623884
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. DOI: 10.1074/jbc.M110.136622 ; PMID: 20516081
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Structure, function and regulation of plant proteasomes. DOI: 10.1016/j.biochi.2007.07.019 ; PMID: 17825468
- Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis. DOI: 10.1016/j.molcel.2021.03.026 ; PMID: 33961777
- Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms. DOI: 10.1074/jbc.M311977200 ; PMID: 14623884
Gene Resources
- UniProt: A0A178UR80
- EMBL: LR881470, LUHQ01000005
- AlphaFoldDB: A0A178UR80
- EnsemblPlants: AT5G09900.1
- Gramene: AT5G09900.1
- KEGG: ath:AT5G09900
- ExpressionAtlas: AT5G09900
- InterPro: IPR000717, IPR036388, IPR036390
- PANTHER: PTHR10855, PTHR10855:SF1
- SUPFAM: SSF46785
- PROSITE: PS50250
- Gene3D: 1.10.10.10
- SWISS-MODEL: A0A178UR80
Sequences
cDNA Sequence
- >AT5G09900.1
AGCGAATCTAAGGAATATGTAAGAGGATCAATATTCGAATTCTAAGAGCGTAATAAGAGTTTCACAGAAGTAAGATTCACCTTCTTCCTCCTTAACGTTCTTCTCCTCGATGAAAAAAATTCAGAAAAGATCTTTCCAGTAATCAAGGTAAACCATTGAATCTCGAGACAGGGAGTTCTCGATCGACATTATAGAATCTCTGGTTTCGCTACGAAAATTCGAAGATATCATGAGATTTGGGCGGAAGAACGAACGACGTGAGTTTGTTCAATCAATGGGATCGGTTCGATACTTCTGAACCAACACCATACCATATAACTAGACCGGTATTACATACCAAACCTGATTGACTCAAAACAATTAGTTAATGGCCCATTAGCAGCCCATGTAAAAAGATCCATCGGCCGAAGAATCTGAGATTTCTTGTTCAAGGGGTTGGGAACTCTGCGAATTATCTGTGCTCAGCTACTCCCAAAAGCTCTCTCATCTCTCTCGTCCGTCTCCTCTTTCTCCATAGTTTAAAGCTTCGTCGTTCCGTCACCAGAATTTCAACTACTTTGAGTTGATTCTCGTTGGATTTCTCACGATGGGAGACAGCGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCCGAAAACGTAGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGCTAAGGATTGGAAACTTCTGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAATCCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGACATTGAAACTCGGATAGAGCTTATCAAGACGCTGAACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGGGCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGGTCAGATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGATACAAAAAAAGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGCTGATATACCAACCCTTTTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACAAGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGATTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCATGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCAAAAGCACTGATTGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGCAAAGGACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTGGAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGAAAACATGCGGTCTTCTTCATGAAAACTTTTCAGGATCTTCTTCGTTGAGTTATTAGCATCTTTATGTGGTAAAAACTCGAATCAGTGTTTCCTTTTAAAAATTGTACTATGGATCTGTACACTAACGAAGTGTTTTGCCACTTATTGGTTATTTCAAGTGTTGGTGGATTAGTTTTTGGTTAAA - >AT5G09900.3
AGCGAATCTAAGGAATATGTAAGAGGATCAATATTCGAATTCTAAGAGCGTAATAAGAGTTTCACAGAAGTAAGATTCACCTTCTTCCTCCTTAACGTTCTTCTCCTCGATGAAAAAAATTCAGAAAAGATCTTTCCAGTAATCAAGGTAAACCATTGAATCTCGAGACAGGGAGTTCTCGATCGACATTATAGAATCTCTGGTTTCGCTACGAAAATTCGAAGATATCATGAGATTTGGGCGGAAGAACGAACGACGTGAGTTTGTTCAATCAATGGGATCGGTTCGATACTTCTGAACCAACACCATACCATATAACTAGACCGGTATTACATACCAAACCTGATTGACTCAAAACAATTAGTTAATGGCCCATTAGCAGCCCATGTAAAAAGATCCATCGGCCGAAGAATCTGAGATTTCTTGTTCAAGGGGTTGGGAACTCTGCGAATTATCTGTGCTCAGCTACTCCCAAAAGCTCTCTCATCTCTCTCGTCCGTCTCCTCTTTCTCCATAGTTTAAAGCTTCGTCGTTCCGTCACCAGAATTTCAACTACTTTGAGTTGATTCTCGTTGGATTTCTCACGATGGGAGACAGCGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCCGAAAACGTAGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGCTAAGGATTGGAAACTTCTGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAATCCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGACATTGAAACTCGGATAGAGCTTATCAAGACGCTGAACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGGGCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGGTCAGATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGATACAAAAAAAGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGCTGATATACCAACCCTTTTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACAAGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGATTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCATGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCAAAAGCACTGATTGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGCAAAGGACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTGGAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGAAAACATGCGGTCTTCTTCATGAAAACTTTTCAGGATCTTCTTCGTTGAGTTATTAGCATCTTTATGTGGTAAAAACTCGAATCAGTGTTTCCTTTTAAAAATTGTACTATGGATCTGTACACTAACGAAGTGTTTTGCCACTTATTGGTTATTTCAAGTGTTGGTGGATTAGTTTTTGGTTAAA - >AT5G09900.2
AGCGAATCTAAGGAATATGTAAGAGGATCAATATTCGAATTCTAAGAGCGTAATAAGAGTTTCACAGAAGTAAGATTCACCTTCTTCCTCCTTAACGTTCTTCTCCTCGATGAAAAAAATTCAGAAAAGATCTTTCCAGTAATCAAGGTAAACCATTGAATCTCGAGACAGGGAGTTCTCGATCGACATTATAGAATCTCTGGTTTCGCTACGAAAATTCGAAGATATCATGAGATTTGGGCGGAAGAACGAACGACGTGAGTTTGTTCAATCAATGGGATCGGTTCGATACTTCTGAACCAACACCATACCATATAACTAGACCGGTATTACATACCAAACCTGATTGACTCAAAACAATTAGTTAATGGCCCATTAGCAGCCCATGTAAAAAGATCCATCGGCCGAAGAATCTGAGATTTCTTGTTCAAGGGGTTGGGAACTCTGCGAATTATCTGTGCTCAGCTACTCCCAAAAGCTCTCTCATCTCTCTCGTCCGTCTCCTCTTTCTCCATAGTTTAAAGCTTCGTCGTTCCGTCACCAGAATTTCAACTACTTTGAGTTGATTCTCGTTGGATTTCTCACGATGGGAGACAGCGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCCGAAAACGTAGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGCTAAGGATTGGAAACTTCTGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAATCCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGACATTGAAACTCGGATAGAGCTTATCAAGACGCTGAACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGGGCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGGTCAGATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGATACAAAAAAAGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGCTGATATACCAACCCTTTTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACAAGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGATTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCATGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCAAAAGCACTGATTGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGCAAAGGACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTGGAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGAAAACATGCGGTCTTCTTCATGAAAACTTTTCAGGATCTTCTTCGTTGAGTTATTAGCATCTTTATGTGGTAAAAACTCGAATCAGTGTTTCCTTTTAAAAATTGTACTATGGATCTGTACACTAACGAAGTGTTTTGCCACTTATTGGTTATTTCAAGTGTTGGTGGATTAGTTTTTGGTTAAA
CDS Sequence
Protein Sequence