Information report for AT5G09870
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0006048 — seed coat epidermis — epidermis de la cubierta de la semilla (Spanish, exact), 種子種皮表皮 (Japanese, exact)
- GO:0009833 — involved in — plant-type primary cell wall biogenesis
- GO:0048354 — involved in — mucilage biosynthetic process involved in seed coat development
- GO:0010192 — acts upstream of or within — mucilage biosynthetic process
- GO:0009832 — acts upstream of or within — plant-type cell wall biogenesis
- GO:0030244 — involved in — cellulose biosynthetic process
- GO:0030244 — acts upstream of or within — cellulose biosynthetic process
- GO:0016760 — enables — cellulose synthase (UDP-forming) activity
- GO:0005886 — is active in — plasma membrane
- GO:0016759 — enables — cellulose synthase activity
- GO:0005886 — located in — plasma membrane
- GO:0009832 — involved in — plant-type cell wall biogenesis
- GO:0016757 — enables — glycosyltransferase activity
- CS2106718 — Seed mucilage defects.
- CS2106719 — Seed mucilage defects.
- CS3906 — Defective in seed coat mucilage secretory cells; seed coats produce mucilage with altered sugar composition and altered staining and mechanical properties.
- ixr2-1 cesa5 — The homozygous cesa6/cesa5 double mutant is seedling lethal.
Functional Keywords
Literature and News
- The irregular xylem3 locus of Arabidopsis encodes a cellulose synthase required for secondary cell wall synthesis. DOI: 10.1105/tpc.11.5.769 ; PMID: 10330464
- Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall. DOI: 10.1105/tpc.9.5.689 ; PMID: 9165747
- Isolation and characterization of mutants defective in seed coat mucilage secretory cell development in Arabidopsis. DOI: 6897 ; PMID: 11706181
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. DOI: 10.1105/tpc.104.023150 ; PMID: 15308754
- Loss of TIP1;1 aquaporin in Arabidopsis leads to cell and plant death. DOI: 10.1111/j.1365-313X.2004.02265.x ; PMID: 15584951
- Cellulose synthesis in higher plants. DOI: 10.1146/annurev.cellbio.22.022206.160206 ; PMID: 16824006
- The cellulose synthase (CESA) gene superfamily of the moss Physcomitrella patens. DOI: 10.1007/s11103-006-9083-1 ; PMID: 17006591
- General detoxification and stress responses are mediated by oxidized lipids through TGA transcription factors in Arabidopsis. DOI: 10.1105/tpc.107.054809 ; PMID: 18334669
- GeneCAT–novel webtools that combine BLAST and co-expression analyses. DOI: 10.1093/nar/gkn292 ; PMID: 18480120
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106. DOI: 10.1104/pp.108.126979 ; PMID: 18805951
- Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes. DOI: 10.1186/1471-2229-9-6 ; PMID: 19149885
- Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings. DOI: 10.1093/jxb/ern344 ; PMID: 19269997
- The GLABRA2 homeodomain protein directly regulates CESA5 and XTH17 gene expression in Arabidopsis roots. DOI: 10.1111/j.1365-313X.2009.03976.x ; PMID: 19619157
- Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber. DOI: 10.1111/j.1744-7909.2010.00934.x ; PMID: 20377682
- Subfunctionalization of cellulose synthases in seed coat epidermal cells mediates secondary radial wall synthesis and mucilage attachment. DOI: 10.1104/pp.111.179069 ; PMID: 21750228
- Cellulose synthesis via the FEI2 RLK/SOS5 pathway and cellulose synthase 5 is required for the structure of seed coat mucilage in Arabidopsis. DOI: 10.1111/j.1365-313X.2011.04760.x ; PMID: 21883548
- Phytochrome regulation of cellulose synthesis in Arabidopsis. DOI: 10.1016/j.cub.2011.09.026 ; PMID: 22036185
- Cellulose synthesis in two secondary cell wall processes in a single cell type. DOI: 10.4161/psb.6.11.17709 ; PMID: 22057330
- The FEI2-SOS5 pathway and CELLULOSE SYNTHASE 5 are required for cellulose biosynthesis in the Arabidopsis seed coat and affect pectin mucilage structure. DOI: 10.4161/psb.18819 ; PMID: 22353871
- Starting to gel: how Arabidopsis seed coat epidermal cells produce specialized secondary cell walls. DOI: 10.3390/ijms16023452 ; PMID: 25658798
- Unidirectional movement of cellulose synthase complexes in Arabidopsis seed coat epidermal cells deposit cellulose involved in mucilage extrusion, adherence, and ray formation. DOI: 10.1104/pp.15.00478 ; PMID: 25926481
- Highly Branched Xylan Made by IRREGULAR XYLEM14 and MUCILAGE-RELATED21 Links Mucilage to Arabidopsis Seeds. DOI: 10.1104/pp.15.01441 ; PMID: 26482889
- Dissecting Seed Mucilage Adherence Mediated by FEI2 and SOS5. DOI: 10.3389/fpls.2016.01073 ; PMID: 27524986
- The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. DOI: 10.1105/tpc.16.00454 ; PMID: 27624758
- The role of COBRA-LIKE 2 function, as part of the complex network of interacting pathways regulating Arabidopsis seed mucilage polysaccharide matrix organization. DOI: 10.1111/tpj.13871 ; PMID: 29446495
- Cellulose Synthase Mutants Distinctively Affect Cell Growth and Cell Wall Integrity for Plant Biomass Production in Arabidopsis. DOI: 10.1093/pcp/pcy050 ; PMID: 29514326
- Seed hemicelluloses tailor mucilage properties and salt tolerance. DOI: 10.1111/nph.17056 ; PMID: 33128402
- HOMEODOMAIN GLABROUS2 regulates cellulose biosynthesis in seed coat mucilage by activating CELLULOSE SYNTHASE5. DOI: 10.1093/plphys/kiaa007 ; PMID: 33631797
- The Genetic Control of SEEDSTICK and LEUNIG-HOMOLOG in Seed and Fruit Development: New Insights into Cell Wall Control. DOI: 10.3390/plants11223146 ; PMID: 36432874
- The irregular xylem3 locus of Arabidopsis encodes a cellulose synthase required for secondary cell wall synthesis. DOI: 10.1105/tpc.11.5.769 ; PMID: 10330464
- Molecular analysis of cellulose biosynthesis in Arabidopsis. DOI: 10.1126/science.279.5351.717 ; PMID: 9445479
- Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall. DOI: 10.1105/tpc.9.5.689 ; PMID: 9165747
- Isolation and characterization of mutants defective in seed coat mucilage secretory cell development in Arabidopsis. DOI: 6897 ; PMID: 11706181
- Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. DOI: 10.1074/mcp.T300006-MCP200 ; PMID: 14506206
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- General detoxification and stress responses are mediated by oxidized lipids through TGA transcription factors in Arabidopsis. DOI: 10.1105/tpc.107.054809 ; PMID: 18334669
Gene Resources
- UniProt: A0A178UC97
- EMBL: CACRSJ010000110, LUHQ01000005
- AlphaFoldDB: A0A178UC97
- EnsemblPlants: AT5G09870.1
- Gramene: AT5G09870.1
- KEGG: ath:AT5G09870
- Orthologous matrix: VYCIPKL
- ExpressionAtlas: AT5G09870
- InterPro: IPR001841, IPR005150, IPR013083
- PANTHER: PTHR13301
- SUPFAM: SSF53448, SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10, 3.90.550.10
- SWISS-MODEL: A0A178UC97
- Conserved Domain Database: cd16617
Sequences
cDNA Sequence
- >AT5G09870.1
TTTGTTGGTAGTTTGTGTGGTTTTCTTTCTCTACTTTGGTTTGGTAGTTGATTACTTGAGGAGGTACTTCAATATCTTCCGTCTGTGTCTCTCTCTCTTCGTCTTCTTCATTACGCGTCTTCTTCTTTCTCCTCTTCTTCTACATTAGCCCCTCTCTCTTTAATTAGCTGCAGCTCACCTTTCACTATCTCTTCTTTTATATTGATTGTGAACTTGTGTGTGTGCGTACATTTGGAGTTTCAGAGAAAAACAGTTGGATTCACTCCAATACCTAACCTTTCACCCATCTTCCTCATTACTTCTTCAGAAGAAACTGAGAAATCTTCTCTGCAAAGCTTGTAATTGCATGTTTTGATGGGAGTTGTAACGACTGGATCTCTCTCGACCAACCTGTTGGGTTGACTTGACCCGGTTGCAGACCTCGGAAGCTAGAGATTGCGTGTGTGTGTCTGAATTTGACATACTGTCTACTGTTTTGTCGGTACTATGAATACTGGTGGTCGGCTCATCGCTGGTTCTCACAATAGGAATGAGTTCGTGTTGATTAATGCAGACGAGAGTGCCAGAATTAGATCAGTGGAAGAACTAAGTGGACAAACATGTCAAATCTGTGGAGATGAGATTGAGCTAAGTGTTGATGGAGAGTCTTTTGTGGCATGTAATGAATGTGCTTTCCCTGTCTGTAGACCTTGCTATGAGTATGAGAGACGAGAAGGAAACCAATCTTGTCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAGGAAGTCCAAGGGTTGAAGGAGATGAGGAGGATGATGGAATTGATGATCTTGATTTTGAGTTTGATTATAGTAGGAGTGGCCTTGAATCTGAAACTTTCTCTCGCCGCAACTCGGAGTTTGATTTGGCCTCTGCTCCACCTGGCTCACAGATTCCTTTGTTAACTTATGGAGAGGAGGACGTTGAAATTTCTTCTGATAGTCATGCTCTCATTGTTTCTCCATCACCTGGCCATATCCATAGGGTTCATCAACCTCATTTTCCTGACCCCGCTGCACATCCAAGACCAATGGTACCTCAGAAAGACCTTGCGGTCTATGGATATGGAAGTGTTGCGTGGAAGGATCGTATGGAGGAGTGGAAGAGAAAGCAGAACGAAAAATATCAGGTGGTTAAACATGATGGAGATTCTAGTCTTGGAGACGGAGATGATGCTGATATTCCTATGATGGATGAGGGAAGGCAGCCTTTGTCTAGGAAAGTACCGATAAAGTCGAGCAAAATAAATCCGTACAGGATGCTAATTGTTCTGCGTCTTGTGATTCTCGGTCTCTTTTTCCATTACCGTATTCTTCACCCCGTCAATGATGCTTACGCCTTGTGGCTAATATCTGTGATATGCGAAATATGGTTTGCGGTTTCATGGGTTCTTGATCAGTTCCCTAAATGGTATCCTATAGAAAGAGAGACATACTTGGACAGGCTCTCATTGAGGTACGAAAAAGAAGGGAAACCATCTGAACTAGCTGGTGTTGATGTTTTTGTGAGTACAGTGGATCCGATGAAAGAGCCTCCGCTTATTACAGCAAACACTGTTCTGTCTATTCTTGCGGTTGATTATCCGGTAGACAGAGTTGCCTGTTATGTTTCTGATGATGGTGCTGCTATGCTTACTTTTGAAGCCCTTTCAGAAACAGCAGAGTTTGCTAGGAAATGGGTTCCTTTCTGTAAGAAATACACTATCGAGCCACGAGCTCCCGAATGGTATTTTTGCCACAAGATGGATTATTTAAAGAATAAAGTTCACCCTGCATTTGTTAGGGAACGCCGAGCCATGAAGAGAGATTATGAAGAATTCAAGGTTAAGATCAATGCTTTAGTTGCGACTGCACAGAAAGTGCCTGAAGAAGGTTGGACTATGCAAGACGGTACTCCTTGGCCCGGTAATAACGTGCGAGATCACCCTGGCATGATCCAGGTATTCCTTGGAAATAACGGTGTCCGCGATGTAGAAAACAACGAGTTGCCTCGGCTGGTTTATGTTTCTCGTGAGAAGAGACCCGGATTTGACCATCACAAGAAGGCTGGAGCCATGAACTCCCTGATACGAGTCTCTGGAGTTCTATCAAATGCTCCTTATCTTCTAAATGTCGATTGTGATCACTACATCAATAATAGCAAAGCTCTTAGAGAAGCAATGTGTTTCATGATGGATCCTCAGTCGGGAAAGAAAATTTGTTATGTTCAATTCCCTCAAAGATTCGATGGGATTGATAAAAGTGACAGATACTCTAATCGTAATGTTGTATTCTTCGATATTAATATGAAAGGTTTGGATGGATTACAAGGGCCTATATACGTGGGAACCGGGTGTGTTTTTAGGAGACAAGCACTTTATGGATTTGATGCGCCAAAAAAGAAGAAGACTAAGCGTATGACTTGCAATTGCTGGCCTAAGTGGTGTTTGTTTTGTTGTGGTCTAAGAAAGAATCGTAAGTCAAAGACAACGGATAAGAAAAAGAAGAACAGGGAAGCCTCAAAGCAGATACACGCGCTAGAAAATATCGAAGAGGGCACCAAAGGCACTAATGATGCGGCGAAATCACCAGAGGCGGCACAATTGAAGTTGGAGAAGAAGTTTGGACAGTCTCCTGTTTTTGTTGCGTCTGCTGGTATGGAGAATGGTGGGCTTGCTAGGAATGCGAGTCCAGCTTCTCTGCTTAGAGAAGCCATCCAAGTCATTAGTTGTGGATACGAAGATAAAACCGAATGGGGAAAAGAGATTGGGTGGATCTACGGTTCTGTCACCGAGGATATCCTTACGGGTTTCAAGATGCATTCTCATGGCTGGAGATCGGTTTACTGTACACCTAAGATACCGGCCTTTAAAGGATCAGCACCTATCAATCTTTCTGACCGTCTTCATCAAGTTCTTCGGTGGGCGCTCGGGTCTGTTGAGATTTTCTTGAGCAGACATTGTCCTATTTGGTATGGTTATGGAGGTGGTTTGAAATGGCTTGAGAGATTGTCTTACATCAACTCTGTGGTTTATCCATGGACCTCTATTCCACTCCTTGTTTACTGTTCTCTCCCAGCTATCTGTCTTCTCACCGGAAAATTCATCGTCCCTGAGATTAGCAACTATGCAAGTATCCTCTTCATGGCACTTTTCGGGTCGATTGCTGTAACGGGCATTCTCGAGATGCAATGGGGTAAAGTAGGGATCGATGATTGGTGGAGAAACGAACAGTTTTGGGTGATTGGAGGTGTTTCAGCTCATCTCTTTGCTCTCTTCCAAGGTCTCCTAAAGGTTTTAGCCGGTGTTGAGACAAACTTCACAGTTACATCTAAAGCAGCAGATGATGGTGAATTCTCTGAGCTTTACATCTTCAAATGGACATCACTCTTGATCCCTCCAACCACACTACTCATCATAAACGTAATCGGAGTCATTGTGGGAATATCTGATGCGATCAGTAACGGATATGACTCGTGGGGTCCTCTTTTCGGAAGATTGTTCTTTGCCTTTTGGGTCATCCTCCATCTATATCCTTTCCTTAAAGGTCTGCTTGGGAAACAAGACAGAATGCCTACAATCATTCTTGTCTGGTCGATCCTTCTCGCCTCTATCCTTACGCTTCTTTGGGTACGAGTCAATCCGTTTGTGGCGAAAGGCGGTCCTATCCTCGAGATATGTGGCTTGGACTGCCTTTGATTGAACTCAAGAGTTGATATGATACGTAACAGATTTTCCACAGAGGTAAGTAAAGAGGAAAGTGTCGCTCACACATTTGTTTGTTTACTGTGTTAAGATCCTTGTTAGATTGAACACAAAAAGAAAAGAAGGATTTAGATATATAATGTTATTCTTTTGGAAGGTGTTGTAATGTAGATATAGAAGAAGGTGGTGTCGTCTATTTATTCTTGTTATTTTTTTTTGAGTGAAAGTGAAACAGAAAAGAGAGGTGTTATCTTATTAATTCTTTCATTGAAATATTTTGAGAAATCTTCTGCAAGTTCTTGAAAGAAAAAGAAGAAGGTTACTTTCATCAACAATTGTTAAGAAGATGTTTTTGTGAGGGATTCTTCTTGTCTGAAACATAAGGAGAGATTCAATCTCCGTGGATCTCCTTGTCTTAGTTCTCTTAAGAATTATT
CDS Sequence
Protein Sequence