Information report for AT5G09860
Gene Details
|
|
Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0031047 — acts upstream of or within — regulatory ncRNA-mediated gene silencing
- GO:0005634 — located in — nucleus
- GO:0006406 — acts upstream of or within — mRNA export from nucleus
- GO:0032784 — involved in — regulation of DNA-templated transcription elongation
- GO:0005622 — located in — intracellular anatomical structure
- GO:0009873 — acts upstream of or within — ethylene-activated signaling pathway
- GO:0050832 — acts upstream of or within — defense response to fungus
- GO:0000445 — part of — THO complex part of transcription export complex
- GO:0006406 — involved in — mRNA export from nucleus
- GO:0010267 — acts upstream of or within — ta-siRNA processing
- GO:0000347 — part of — THO complex
- hps8/hps8 — Enhanced phosphate starvation induced root APase activity.Reduced number of lateral roots when grown on phosphate medium.
Functional Keywords
Literature and News
- Characterization of EMU, the Arabidopsis homolog of the yeast THO complex member HPR1. DOI: 10.1261/rna.2265710 ; PMID: 20668032
- Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis. DOI: 10.1073/pnas.0911341107 ; PMID: 20634427
- The conserved RNA trafficking proteins HPR1 and TEX1 are involved in the production of endogenous and exogenous small interfering RNA in Arabidopsis. DOI: 10.1105/tpc.110.076638 ; PMID: 20798330
- HPR1, a component of the THO/TREX complex, plays an important role in disease resistance and senescence in Arabidopsis. DOI: 10.1111/j.1365-313X.2011.04835.x ; PMID: 22035198
- The THO/TREX complex functions in disease resistance in Arabidopsis. DOI: 10.4161/psb.18991 ; PMID: 22499202
- Inhibition of peroxisomal hydroxypyruvate reductase (HPR1) by tyrosine nitration. DOI: 10.1016/j.bbagen.2013.07.002 ; PMID: 23860243
- HYPER RECOMBINATION1 of the THO/TREX complex plays a role in controlling transcription of the REVERSION-TO-ETHYLENE SENSITIVITY1 gene in Arabidopsis. DOI: 10.1371/journal.pgen.1004956 ; PMID: 25680185
- The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module. DOI: 10.1016/j.cub.2017.05.021 ; PMID: 28552357
- Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex. DOI: 10.1111/tpj.13797 ; PMID: 29222952
- The RNA Export Factor ALY1 Enables Genome-Wide RNA-Directed DNA Methylation. DOI: 10.1105/tpc.18.00624 ; PMID: 30814259
- Mutation of HPR1 encoding a component of the THO/TREX complex reduces STOP1 accumulation and aluminium resistance in Arabidopsis thaliana. DOI: 10.1111/nph.16658 ; PMID: 32406528
- The THO/TREX Complex Component RAE2/TEX1 Is Involved in the Regulation of Aluminum Resistance and Low Phosphate Response in Arabidopsis. DOI: 10.3389/fpls.2021.698443 ; PMID: 34322147
Gene Resources
- UniProt: A0A7G2F709
- EMBL: LR881470
- AlphaFoldDB: A0A7G2F709
- EnsemblPlants: AT5G09860.1
- Gramene: AT5G09860.1
- KEGG: ath:AT5G09860
- Orthologous matrix: TTQGHIP
- ExpressionAtlas: AT5G09860
- InterPro: IPR021861
- PANTHER: PTHR13265, PTHR13265:SF0
- SWISS-MODEL: A0A7G2F709
Sequences
cDNA Sequence
- >AT5G09860.1
GGATAATTTGATTGTTGGGAGGATATCTTCCGGATCCGGATCCACCCTAAATTAAAATTGTTCTTCCTCCACTCTTCTTCAAGTTTGGCCTCCGTTTCCAGATTTTTATTCAATTCTTCTTAATCAACTTTTAAAATCCGGCGACTCATAGTCCGTGAATTTTGACCGGCATATCCGGTTTTGGTGTCGTCGGTAAATTCCTCTTCATTGCAGTGGAAGCTGGTTCATTGAGAAATAATGGATGCATTTAGAGATGCTATATTGCAGCGAGCTCCAATTGAAACCTTTGCACTCAAGACTGTTCAACACTTTATACAACCTCAGAAACAAACAAAGTTGGCTCAAGATGAAAACCAAATGCTTGAAAACATGCTCCGGACATTGCTGCAGGAGCTAGTGGCTGCTGCTGCGCAATCAGGGGAGCAAATTATGCAGTATGGTCAGTTGATTGACGATGATGATGATGATGATGATATACATGGACAGATTCCTCATCTTCTAGATGTTGTGCTTTATCTTTGTGAGAAAGAGCATGTAGAAGGTGGCATGATATTCCAGCTGCTGGAGGATTTGACCGAAATGTCTACTATGAAAAACTGTAAAGATGTTTTCGGTTATATTGAAAGCAAACAAGATATATTGGGCAAGCAAGAGCTTTTTGCACGCGGAAAACTTGTCATGTTGAGGACTTGCAACCAACTTCTCCGCCGACTCTCAAAGGCCAATGATGTTGTATTCTGTGGAAGGATTCTTATGTTTTTGGCTCACTTTTTTCCGTTATCTGAGCGCTCAGCCGTCAATATAAAAGGTGTTTTTAATACATCTAATGAAACCAAATATGAAAAAGATCCTCCAAAAGGCATTTCTGTAGATTTCAACTTCTACAAGACATTTTGGAGTTTACAGGAGTATTTCTGTAATCCCGCTTCTCTTACTTCCGCATCTACCAAGTGGCAGAAATTTTCATCCAGTTTGGCGGTTGTTTTAAACACCTTTGATGCTCAACCACTAAGCGAAGAAGAGGGAGAGGCTAATAGTTTGGAGGAAGAGGCAGCAACTTTTAATATAAAGTACCTAACAAGTAGTAAATTGATGGGTTTAGAGTTAAAGGATTCGAGTTTCCGACGACATATTCTTCTCCAGTGCCTCATTATGTTTGATTATCTAAGGGCACCAGGGAAGAACGACAAAGATCTGCCATCTGAAACCATGAAGGAAGAACTTAAGTCATGTGAGGATCGTGTAAAGAAATTGCTTGAGATCACTCCGCCTAAAGGGAAAGAATTCCTCCGTGCAGTTGAGCATATACTGGAGCGCGAAAAGAATTGGGTCTGGTGGAAACGTGATGGATGTCCACCATTTGAAAAGCAACCGATAGATAAGAAATCACCTAATGCAGGGCAAAAGAAACGGAGACAAAGATGGAGATTGGGAAATAAAGAACTCTCCCAACTTTGGAGATGGGCAGATCAAAATCCGAATGCTTTGACTGATTCTCAACGCGTGCGAACCCCTGATATTGCAGACTACTGGAAACCATTAGCAGAAGATATGGATCCATCAGCTGGCATAGAAGATGAGTACCATCATAAAAACAACAGAGTTTACTGCTGGAAAGGTCTTCGGTTTACAGCTCGGCAAGACCTTGAAGGATTTTCTAGGTTTACTGAAATGGGAATCGAAGGAGTTGTCCCAGTTGAACTATTGCCGCCTGAGGTCCGGTCCAAATACCAAGCTAAACCAAACGAAAAAGCCAAACGAGCGAAGAAAGAAGAAACCAAAGGTGGATCTCATGAAACAGAGGGAAACCAGATTGGTGTTTCTAATAGTGAAGCTGAAGCTGAAGGAGGAAGGGGTGATGCAGAGACGATGGAGAGTGATGCTATTGCAGACACTCCTACGCCTGAGGAACAGCAAAGACTCGGTGGTTCTGATACAGAAAACGGTCAAGAGGCCGGTCAAATCGAAGACGGAGAGACAGAAGAAGCTGGTCTGATGGACACTGATCTTGATCATCCTCCTATGCCCGTCTCATGAATACGCTTTCAGTTTGTCGACCCTTTCTTCAATGGGGAATCCTTTGGATATGAAGTTCAAAAGTATTGATGTTTAACAAATTATGTTAAAAGGTATTTTCTAAATATGTTTGTATGAGTGCAAATCTGCTAGCTTATTACCTGTCTTTCCATTTCTATATACTCAACAAAATCATCATACAATTAAGTTCTTTTGCGTAATTTATCGTCTAAGTGTAACACTAGACACATATTCGCAGCTAATAAACATTGGATTC - >AT5G09860.2
GGATAATTTGATTGTTGGGAGGATATCTTCCGGATCCGGATCCACCCTAAATTAAAATTGTTCTTCCTCCACTCTTCTTCAAGTTTGGCCTCCGTTTCCAGATTTTTATTCAATTCTTCTTAATCAACTTTTAAAATCCGGCGACTCATAGTCCGTGAATTTTGACCGGCATATCCGGTTTTGGTGTCGTCGGTAAATTCCTCTTCATTGCAGTGGAAGCTGGTTCATTGAGAAATAATGGATGCATTTAGAGATGCTATATTGCAGCGAGCTCCAATTGAAACCTTTGCACTCAAGACTGTTCAACACTTTATACAACCTCAGAAACAAACAAAGTTGGCTCAAGATGAAAACCAAATGCTTGAAAACATGCTCCGGACATTGCTGCAGGAGCTAGTGGCTGCTGCTGCGCAATCAGGGGAGCAAATTATGCAGTATGGTCAGTTGATTGACGATGATGATGATGATGATGATATACATGGACAGATTCCTCATCTTCTAGATGTTGTGCTTTATCTTTGTGAGAAAGAGCATGTAGAAGGTGGCATGATATTCCAGCTGCTGGAGGATTTGACCGAAATGTCTACTATGAAAAACTGTAAAGATGTTTTCGGTTATATTGAAAGCAAACAAGATATATTGGGCAAGCAAGAGCTTTTTGCACGCGGAAAACTTGTCATGTTGAGGACTTGCAACCAACTTCTCCGCCGACTCTCAAAGGCCAATGATGTTGTATTCTGTGGAAGGATTCTTATGTTTTTGGCTCACTTTTTTCCGTTATCTGAGCGCTCAGCCGTCAATATAAAAGGTGTTTTTAATACATCTAATGAAACCAAATATGAAAAAGATCCTCCAAAAGGCATTTCTGTAGATTTCAACTTCTACAAGACATTTTGGAGTTTACAGGAGTATTTCTGTAATCCCGCTTCTCTTACTTCCGCATCTACCAAGTGGCAGAAATTTTCATCCAGTTTGGCGGTTGTTTTAAACACCTTTGATGCTCAACCACTAAGCGAAGAAGAGGGAGAGGCTAATAGTTTGGAGGAAGAGGCAGCAACTTTTAATATAAAGTACCTAACAAGTAGTAAATTGATGGGTTTAGAGTTAAAGGATTCGAGTTTCCGACGACATATTCTTCTCCAGTGCCTCATTATGTTTGATTATCTAAGGGCACCAGGGAAGAACGACAAAGATCTGCCATCTGAAACCATGAAGGAAGAACTTAAGTCATGTGAGGATCGTGTAAAGAAATTGCTTGAGATCACTCCGCCTAAAGGGAAAGAATTCCTCCGTGCAGTTGAGCATATACTGGAGCGCGAAAAGAATTGGGTCTGGTGGAAACGTGATGGATGTCCACCATTTGAAAAGCAACCGATAGATAAGAAATCACCTAATGCAGGGCAAAAGAAACGGAGACAAAGATGGAGATTGGGAAATAAAGAACTCTCCCAACTTTGGAGATGGGCAGATCAAAATCCGAATGCTTTGACTGATTCTCAACGCGTGCGAACCCCTGATATTGCAGACTACTGGAAACCATTAGCAGAAGATATGGATCCATCAGCTGGCATAGAAGATGAGTACCATCATAAAAACAACAGAGTTTACTGCTGGAAAGGTCTTCGGTTTACAGCTCGGCAAGACCTTGAAGGATTTTCTAGGTTTACTGAAATGGGAATCGAAGGAGTTGTCCCAGTTGAACTATTGCCGCCTGAGGTCCGGTCCAAATACCAAGCTAAACCAAACGAAAAAGCCAAACGAGCGAAGAAAGAAGAAACCAAAGGTGGATCTCATGAAACAGAGGGAAACCAGATTGGTGTTTCTAATAGTGAAGCTGAAGCTGAAGGAGGAAGGGGTGATGCAGAGACGATGGAGAGTGATGCTATTGCAGACACTCCTACGCCTGAGGAACAGCAAAGACTCGGTGGTTCTGATACAGAAAACGGTCAAGAGGCCGGTCAAATCGAAGACGGAGAGACAGAAGAAGCTGGTCTGATGGACACTGATCTTGATCATCCTCCTATGCCCGTCTCATGAATACGCTTTCAGTTTGTCGACCCTTTCTTCAATGGGGAATCCTTTGGATATGAAGTTCAAAAGTATTGATGTTTAACAAATTATGTTAAAAGGTATTTTCTAAATATGTTTGTATGAGTGCAAATCTGCTAGCTTATTACCTGTCTTTCCATTTCTATATACTCAACAAAATCATCATACAATTAAGTTCTTTTGCGTAATTTATCGTCTAAGTGTAACACTAGACACATATTCGCAGCTAATAAACATTGGATTC
CDS Sequence
Protein Sequence