Information report for AT5G09800
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0031347 — acts upstream of or within — regulation of defense response
- GO:0042742 — acts upstream of or within — defense response to bacterium
- GO:0005634 — located in — nucleus
- GO:1901701 — acts upstream of or within — cellular response to oxygen-containing compound
- GO:0036211 — acts upstream of or within — protein modification process
- GO:0071310 — acts upstream of or within — cellular response to organic substance
- GO:0050832 — acts upstream of or within — defense response to fungus
- GO:0005515 — enables — protein binding
- GO:0009753 — acts upstream of or within — response to jasmonic acid
- GO:0010015 — acts upstream of or within — root morphogenesis
- GO:0061630 — enables — ubiquitin protein ligase activity
- GO:0044281 — acts upstream of or within — small molecule metabolic process
- GO:0009611 — acts upstream of or within — response to wounding
- GO:0007165 — acts upstream of or within — signal transduction
- GO:0010035 — acts upstream of or within — response to inorganic substance
Functional Keywords
Literature and News
- Armadillo repeat proteins: beyond the animal kingdom. DOI: 10.1016/s0962-8924(03)00167-3 ; PMID: 12946625
- Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. DOI: 10.1104/pp.104.047019 ; PMID: 15375205
- Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome. DOI: 10.1111/j.1365-313X.2004.02295.x ; PMID: 15634198
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
- Arabidopsis PUB22 and PUB23 are homologous U-Box E3 ubiquitin ligases that play combinatory roles in response to drought stress. DOI: 10.1105/tpc.108.060699 ; PMID: 18664614
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- News from the PUB: plant U-box type E3 ubiquitin ligases. DOI: 10.1093/jxb/erx411 ; PMID: 29237060
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
Gene Resources
- UniProt: A0A178UA46
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UA46
- EnsemblPlants: AT5G09800.1
- Gramene: AT5G09800.1
- KEGG: ath:AT5G09800
- Orthologous matrix: EGRASIC
- ExpressionAtlas: AT5G09800
- InterPro: IPR003613, IPR011989, IPR013083
- PANTHER: PTHR22849, PTHR22849:SF20
- SUPFAM: SSF48371, SSF57850
- PROSITE: PS51698
- Gene3D: 1.25.10.10, 3.30.40.10
- OrthoDB: A0A178UA46
- SWISS-MODEL: A0A178UA46
- Conserved Domain Database: cd16664
Sequences
cDNA Sequence
- >AT5G09800.1
ATTTTTTTTTAAATGGAAAAGTATCAAGAGGTTGTTCAAAAAGTGAATTTTGACGTCAGCATATTTGAACTCTCTCTCATGACTCATCATCTTCTTAAAACCTAACCACACGAGTCACGTCTCTTTCTCTCTCAGTGATTTTGTTATTTATTCTCTCTTTGAAACGTTTTCGCCGAAGAAGAAAGAGCAAAAACATGAGGAGCGATGATCTTTACATCACCACCGTCCCTTGTTTCTTCAAATGTCCAATTTCACTTGATGTGATGAAATCTCCGGTGAGTCTCTCCACCGGCGTTACATACGACCGAGTTAGCATCCAACGTTGGCTCGATGATGGTAACAATACTTGTCCCGCGACGATGCAGATTCTTCAGAACAAAGAATTCGTACCTAACCTAACTCTTCACCGTCTCATTGATCACTGGTCCGACTCCATCAACCGTCGAGCCGATTCTGAGTCTCCGGAATCCGATACTCCGACGCGAGACGAAATTAACGCTGCGATTGAGAGATTCCGGATCGAGAATGATGCTCGTTCGAAGATTCTCCGGTTCGCGAGAGAATCTGATGAGAACAGAGAGTTTCTCGCCGGGAAAGATGATTTCGTAGCGATGCTTGTGGATCTCATTAGCGATTCCAGAAACTTCTCTGATTCTCAATTGCTACTCGTTGGAGAAGCGGTGAAGATTCTGAGCATGATTCGTCGGAAAATCTTCGATCGGAGACGGTTATCGAATCTGATCTTAACGAACGGTGGTGATTGCTTGACTTCCTTCTTCCTATTGATTAAACGCGGGAATCCAAAATTGAAGATCGATTGCTCCGCCGTGCTTGAGTTTATCGCCGTCGACGCAGAGTCAAAGCTTATAATCGCCAAGGGAGAAGGATTGGTCACCGAGATTATTAAATTGATAAGCTCAGATTCCGACTCAAGCTTAATCGAAGCGAATTTATCTTTATTAATCGCGATTGCGTCTTCAAAACGCGTGAAACTCGCATTAATCAGAGAAAAGCTAGTCACGAAACTCACGAGTTTGTTAACAGATCCAACTACGAGCGTTTCAGTGACGGAAAAATGCTTAAAGCTTCTCGAAGCTATTTCGTCTTGTAAAGAAGGTCGATCGGAGATTTGTGATGGTGTGTGCGTGGAGACGGTGGTGAATAAGCTGATGAAAGTGTCGACGGCGGCGACTGAACACGCCGTTACGGTTTTGTGGAGCGTCTGTTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTTATTAGAATTAACGGCGTTACGAAGATACTGTTACTTTTACAGAGTAATTGCTCGCTTACCGTTAGGCATATGCTAACGGATCTTCTTAAGGTGTTCAAGGTGAACTCAAGATCTTGCCTTTCGGTATACGAAACCAAAACGACACATATTATGCCGTTTTGATTATCCCCCCTCCGTATTAACTTCTTTAGGGATTATTACTTGTTGGTAAAAAAAATTCAAGTTGTAAGGAAAGAGATTTTTTGGAAGGTGAATGGAATTGTTATCACGGCCAATGCCATTAGAACTTTGAGAATAAATTGCAATGTTCTTTAGTACTAGTATCATTGCAATGTTGATACTCTAAACCAGAATTTTATGTTTGGACTTGGCAAAATCGTA
CDS Sequence
Protein Sequence