Information report for AT5G09790
Gene Details
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Functional Descriptions
- GO:0006275 — acts upstream of or within — regulation of DNA replication
- GO:0005634 — located in — nucleus
- GO:0005515 — enables — protein binding
- GO:0045892 — involved in — negative regulation of DNA-templated transcription
- GO:0009555 — acts upstream of or within — pollen development
- GO:0046976 — enables — histone H3K27 methyltransferase activity
- GO:0045944 — involved in — positive regulation of transcription by RNA polymerase II
- GO:0051726 — acts upstream of or within — regulation of cell cycle
- GO:0009294 — acts upstream of or within — DNA-mediated transformation
- GO:0003712 — enables — transcription coregulator activity
- GO:0009507 — located in — chloroplast
- atxr5 atrx6 — reduced H3K27me1 in vivo; partial heterochromatin decondensation; transcriptional activation of repressed heterochromatic elements
Functional Keywords
Literature and News
- Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. DOI: 10.1104/pp.102.013722 ; PMID: 12805620
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. DOI: 10.1111/j.1365-313X.2006.02799.x ; PMID: 16771839
- RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation. DOI: 10.1073/pnas.0706986104 ; PMID: 17827277
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. DOI: 10.1016/j.cell.2012.10.054 ; PMID: 23313553
- Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. DOI: 10.1126/science.1248357 ; PMID: 24626927
- Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.1006092 ; PMID: 27253878
- Molecular basis for the methylation specificity of ATXR5 for histone H3. DOI: 10.1093/nar/gkx224 ; PMID: 28383693
- Mutation of Arabidopsis SMC4 identifies condensin as a corepressor of pericentromeric transposons and conditionally expressed genes. DOI: 10.1101/gad.301499.117 ; PMID: 28882854
- Computational characterization of substrate and product specificities, and functionality of S-adenosylmethionine binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize. DOI: 10.1002/prot.25399 ; PMID: 29024026
- Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression. DOI: 10.1016/j.devcel.2018.05.023 ; PMID: 29920280
- H3.1K27me1 maintains transcriptional silencing and genome stability by preventing GCN5-mediated histone acetylation. DOI: 10.1093/plcell/koaa027 ; PMID: 33793815
Gene Resources
- UniProt: A0A384LP05
- EMBL: CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A384LP05
- EnsemblPlants: AT5G09790.1
- Gramene: AT5G09790.1
- Orthologous matrix: NDMDGEC
- ExpressionAtlas: AT5G09790
- InterPro: IPR001214, IPR001965, IPR011011
- PANTHER: PTHR48442, PTHR48442:SF1
- SUPFAM: SSF57903, SSF82199
- PROSITE: PS01359, PS50016, PS50280
- Gene3D: 2.170.270.10, 3.30.40.10
- OrthoDB: A0A384LP05
- SWISS-MODEL: A0A384LP05
- Conserved Domain Database: cd10539
Sequences
cDNA Sequence
- >AT5G09790.1
ATTAGTATCACTTACAATGTTTAAACCTTTTAAGACATACCAGTAATTTTGAATTTGTCAAAGGTCAAAAAAACAAAAGAGCCGATAAAGAAGAGTCTCAAAGGAAGAATCCCAAATTACACTCCAGGTGATGCGCACATCAGTTTTCGTGCGCACACGCGGCGGTGCACATTAGCCCCAACCAATCAAAATCATATATCCCGTTCTCCGGCGACTCTTCGTCGTGAGCTTCCGTCATGGCCACATGGAACGCATCCTCCCCTGCGGCGTCTCCTTGCTCATCGAGGCGACGAACGAAAGCTCCAGCGAGACGCCCTTCCTCCGAATCTCCACCACCGAGGAAGATGAAATCAATGGCTGAGATAATGGCGAAATCTGTCCCTGTGGTTGAACAAGAAGAAGAAGAAGACGAAGACAGCTACAGTAACGTCACCTGCGAGAAATGTGGTTCTGGAGAAGGAGACGATGAGCTTCTTCTCTGTGACAAATGCGATAGAGGCTTTCACATGAAATGCCTTAGACCCATTGTTGTTCGTGTCCCCATTGGAACTTGGCTTTGTGTCGATTGTTCCGACCAACGACCTGTAAGAAGGTTATCTCAGAAGAAGATTTTACATTTCTTTCGGATTGAGAAGCATACTCATCAAACAGACAAATTGGAATTGAGTCAAGAAACTAGAAAGCGGAGACGATCTTGCTCTTTGACAGTGAAGAAAAGAAGGAGAAAACTCTTACCTTTGGTTCCATCAGAAGATCCTGATCAGAGGCTTGCACAAATGGGAACACTTGCTTCTGCATTAACGGCATTGGGTATCAAATACAGCGATGGTTTAAATTATGTTCCCGGAATGGCTCCTCGGTCTGCAAATCAATCCAAGTTAGAGAAAGGTGGGATGCAGGTGCTATGCAAAGAAGATTTAGAGACATTGGAACAATGTCAATCTATGTATAGACGAGGAGAATGCCCTCCTCTCGTTGTGGTATTTGATCCGCTTGAAGGTTACACAGTTGAAGCAGATGGTCCTATTAAGGACTTAACATTCATAGCTGAATATACAGGGGATGTTGATTACTTGAAAAACCGAGAAAAAGACGATTGTGACAGCATCATGACTCTCCTTTTATCAGAAGATCCTTCAAAGACTCTTGTTATCTGTCCAGACAAGTTTGGAAACATATCTCGCTTCATTAATGGCATTAACAATCACAATCCGGTTGCTAAGAAGAAGCAGAACTGCAAATGCGTGAGGTATAGCATAAACGGCGAATGTCGAGTTCTTCTAGTGGCTACACGCGATATATCGAAAGGGGAAAGGCTCTATTATGACTACAATGGTTATGAACATGAGTATCCTACTCATCACTTCCTCTGATCTTTCAATTCTAACAGTTCTACAGAGTCTCTAGATCAGATGTTCTTTTTGTTGCCATATTACAGGTCAATTATAAATGTAGGGCTGCTGAATATATGGCCTTTAATTATGAAGTTAGCGGTAGAATAATTGGATTTGGAATGACATTACAGAGATTAAGATGTGGCAAATGTCAATTGCTGAACTTTTGTTTGATATCAAATGAAATCCTAACCTTTTTCTTATA - >AT5G09790.2
ATTAGTATCACTTACAATGTTTAAACCTTTTAAGACATACCAGTAATTTTGAATTTGTCAAAGGTCAAAAAAACAAAAGAGCCGATAAAGAAGAGTCTCAAAGGAAGAATCCCAAATTACACTCCAGGTGATGCGCACATCAGTTTTCGTGCGCACACGCGGCGGTGCACATTAGCCCCAACCAATCAAAATCATATATCCCGTTCTCCGGCGACTCTTCGTCGTGAGCTTCCGTCATGGCCACATGGAACGCATCCTCCCCTGCGGCGTCTCCTTGCTCATCGAGGCGACGAACGAAAGCTCCAGCGAGACGCCCTTCCTCCGAATCTCCACCACCGAGGAAGATGAAATCAATGGCTGAGATAATGGCGAAATCTGTCCCTGTGGTTGAACAAGAAGAAGAAGAAGACGAAGACAGCTACAGTAACGTCACCTGCGAGAAATGTGGTTCTGGAGAAGGAGACGATGAGCTTCTTCTCTGTGACAAATGCGATAGAGGCTTTCACATGAAATGCCTTAGACCCATTGTTGTTCGTGTCCCCATTGGAACTTGGCTTTGTGTCGATTGTTCCGACCAACGACCTGTAAGAAGGTTATCTCAGAAGAAGATTTTACATTTCTTTCGGATTGAGAAGCATACTCATCAAACAGACAAATTGGAATTGAGTCAAGAAACTAGAAAGCGGAGACGATCTTGCTCTTTGACAGTGAAGAAAAGAAGGAGAAAACTCTTACCTTTGGTTCCATCAGAAGATCCTGATCAGAGGCTTGCACAAATGGGAACACTTGCTTCTGCATTAACGGCATTGGGTATCAAATACAGCGATGGTTTAAATTATGTTCCCGGAATGGCTCCTCGGTCTGCAAATCAATCCAAGTTAGAGAAAGGTGGGATGCAGGTGCTATGCAAAGAAGATTTAGAGACATTGGAACAATGTCAATCTATGTATAGACGAGGAGAATGCCCTCCTCTCGTTGTGGTATTTGATCCGCTTGAAGGTTACACAGTTGAAGCAGATGGTCCTATTAAGGACTTAACATTCATAGCTGAATATACAGGGGATGTTGATTACTTGAAAAACCGAGAAAAAGACGATTGTGACAGCATCATGACTCTCCTTTTATCAGAAGATCCTTCAAAGACTCTTGTTATCTGTCCAGACAAGTTTGGAAACATATCTCGCTTCATTAATGGCATTAACAATCACAATCCGGTTGCTAAGAAGAAGCAGAACTGCAAATGCGTGAGGTATAGCATAAACGGCGAATGTCGAGTTCTTCTAGTGGCTACACGCGATATATCGAAAGGGGAAAGGCTCTATTATGACTACAATGGTTATGAACATGAGTATCCTACTCATCACTTCCTCTGATCTTTCAATTCTAACAGTTCTACAGAGTCTCTAGATCAGATGTTCTTTTTGTTGCCATATTACAGGTCAATTATAAATGTAGGGCTGCTGAATATATGGCCTTTAATTATGAAGTTAGCGGTAGAATAATTGGATTTGGAATGACATTACAGAGATTAAGATGTGGCAAATGTCAATTGCTGAACTTTTGTTTGATATCAAATGAAATCCTAACCTTTTTCTTATA
CDS Sequence
Protein Sequence