Information report for AT5G09740
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0016573 — involved in — histone acetylation
- GO:0004402 — enables — histone acetyltransferase activity
- GO:0045944 — involved in — positive regulation of transcription by RNA polymerase II
- GO:0005634 — located in — nucleus
- GO:0010224 — acts upstream of or within — response to UV-B
- GO:0005515 — enables — protein binding
- GO:0006281 — acts upstream of or within — DNA repair
- GO:0003712 — enables — transcription coregulator activity
- GO:0035267 — part of — NuA4 histone acetyltransferase complex
- GO:0045892 — involved in — negative regulation of DNA-templated transcription
Functional Keywords
Literature and News
- Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. DOI: 10.1093/nar/gkf660 ; PMID: 12466527
- Effectiveness of RNA interference in transgenic plants. DOI: 10.1016/j.febslet.2004.04.043 ; PMID: 15147899
- Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. DOI: 10.1186/1471-2164-5-39 ; PMID: 15236668
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- In vitro specificities of Arabidopsis co-activator histone acetyltransferases: implications for histone hyperacetylation in gene activation. DOI: 10.1111/j.1365-313X.2007.03264.x ; PMID: 17877703
- Gene expression profiling of Arabidopsis meiocytes. DOI: 10.1111/j.1438-8677.2010.00435.x ; PMID: 21815983
- Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA. DOI: 10.1104/pp.111.191452 ; PMID: 22170978
- Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes. DOI: 10.1093/nar/gku781 ; PMID: 25183522
- AtPDCD5 Plays a Role in Programmed Cell Death after UV-B Exposure in Arabidopsis. DOI: 10.1104/pp.16.00033 ; PMID: 26884483
- HAC1 and HAF1 Histone Acetyltransferases Have Different Roles in UV-B Responses in Arabidopsis. DOI: 10.3389/fpls.2017.01179 ; PMID: 28740501
- The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing. DOI: 10.15252/embj.201798770 ; PMID: 30104406
- The Arabidopsis NuA4 histone acetyltransferase complex is required for chlorophyll biosynthesis and photosynthesis. DOI: 10.1111/jipb.13227 ; PMID: 35043580
- Conserved and plant-specific histone acetyltransferase complexes cooperate to regulate gene transcription and plant development. DOI: 10.1038/s41477-023-01359-3 ; PMID: 36879016
Gene Resources
- UniProt: A0A178U8L6
- EMBL: CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A178U8L6
- EnsemblPlants: AT5G09740.1
- Gramene: AT5G09740.1
- KEGG: ath:AT5G09740
- Orthologous matrix: DSPEGNN
- ExpressionAtlas: AT5G09740
- InterPro: IPR000953, IPR002717, IPR016181
- PANTHER: PTHR10615, PTHR10615:SF161
- SUPFAM: SSF54160, SSF55729
- PROSITE: PS51726
- Gene3D: 1.10.10.10, 2.30.30.140, 3.30.60.60
- OrthoDB: A0A178U8L6
- SWISS-MODEL: A0A178U8L6
- Conserved Domain Database: cd04301, cd18642
Sequences
cDNA Sequence
- >AT5G09740.2
TATGAGAAAGAAAGCCCACCCGGGAATCTCCGACCCGACCGAGAAATGGGATCGTCAGCGAATACAGAAACCAACGGCAACGCACCGCCACCGTCGTCGAATCAAAAGCCTCCGGCTACGAACGGCGTTGATGGGTCTCATCCTCCTCCTCCTCCTTTAACTCCTGATCAAGCTATTATAGAGTCGGATCCGTCGAAGAAGAGGAAAATGGGGATGCTTCCTCTAGAAGTGGGTACTCGTGTGATGTGTCGGTGGAGAGACGGGAAACACCATCCGGTGAAAGTAATTGAGCGCCGGCGGATACATAACGGCGGTCAAAATGATTACGAGTATTACGTTCATTACACTGAGTTTAATAGGAGGCTGGATGAATGGACTCAGCTGGACCAACTGGACCTTGATTCAGTAGAGTGCGCTGTAGATGAAAAAGTGGAAGACAAGGTAACAAGCTTGAAGATGACACGTCACCAGAAGAGGAAGATCGATGAGACACATATAGAGGGTCATGAAGAGCTGGATGCAGCAAGTTTGCGTGAACATGAAGAGTTCACGAAAGTGAAGAACAAGGTTTATGCACAGAATCTCTGCTACCTGGCAAAGTTATTTCTTGACCACAAAACTCTTTACTACGATGTTGATTTGTTTCTATTCTACGTTCTTTGCGAATGTGATGACCGAGGATGCCACATGGTTGGGTACTTTTCAAAGGAGAAGCATTCGGAAGAAGCATACAACTTAGCTTGCATTCTAACCCTGCCTTCATATCAAAGAAAAGGCTATGGAAAGTTCTTAATAGCCTTTTCCTATGAACTGTCAAAGAAAGAGGGAAAAGTTGGGACACCGGAAAGACCCTTGTCGGATCTAGGCTTACTAAGCTACAGAGGTTATTGGACTCGTGTTCTATTAGAAATCTTGAAAAAACATAAGGGAAACATTTCTATCAAGGAGCTGAGCGACGTGACAGCAATCAAAGCGGAAGATATATTAAGCACACTTCAGAGCCTAGAACTGATACAGTACAGGAAAGGACAGCATGTGATCTGTGCGGATCCAAAGGTTCTGGACCGACATCTGAAAGCTGCAGGCCGAGGTGGTCTTGATGTAGATGCTAGCAAACTGATTTGGACACCTTACAAGGACCAGAGTTAAGAGTAAGTACACTCCTCTTGTGCCATTGGATTTGATTTGAGTGTGTAAGTAAAGCGGGCTGTCTTATTCTCCTGAAATGTAAGTGTACTTTACTTGTAAATGTTGAAATCGTACTTGGAATGGTGTTTGTTTACAACTCTTATAATGAGGAAATTTGAAGCAATTTCATAGGTCCATCTTTCTTTTGCT - >AT5G09740.1
TATGAGAAAGAAAGCCCACCCGGGAATCTCCGACCCGACCGAGAAATGGGATCGTCAGCGAATACAGAAACCAACGGCAACGCACCGCCACCGTCGTCGAATCAAAAGCCTCCGGCTACGAACGGCGTTGATGGGTCTCATCCTCCTCCTCCTCCTTTAACTCCTGATCAAGCTATTATAGAGTCGGATCCGTCGAAGAAGAGGAAAATGGGGATGCTTCCTCTAGAAGTGGGTACTCGTGTGATGTGTCGGTGGAGAGACGGGAAACACCATCCGGTGAAAGTAATTGAGCGCCGGCGGATACATAACGGCGGTCAAAATGATTACGAGTATTACGTTCATTACACTGAGTTTAATAGGAGGCTGGATGAATGGACTCAGCTGGACCAACTGGACCTTGATTCAGTAGAGTGCGCTGTAGATGAAAAAGTGGAAGACAAGGTAACAAGCTTGAAGATGACACGTCACCAGAAGAGGAAGATCGATGAGACACATATAGAGGGTCATGAAGAGCTGGATGCAGCAAGTTTGCGTGAACATGAAGAGTTCACGAAAGTGAAGAACAAGGTTTATGCACAGAATCTCTGCTACCTGGCAAAGTTATTTCTTGACCACAAAACTCTTTACTACGATGTTGATTTGTTTCTATTCTACGTTCTTTGCGAATGTGATGACCGAGGATGCCACATGGTTGGGTACTTTTCAAAGGAGAAGCATTCGGAAGAAGCATACAACTTAGCTTGCATTCTAACCCTGCCTTCATATCAAAGAAAAGGCTATGGAAAGTTCTTAATAGCCTTTTCCTATGAACTGTCAAAGAAAGAGGGAAAAGTTGGGACACCGGAAAGACCCTTGTCGGATCTAGGCTTACTAAGCTACAGAGGTTATTGGACTCGTGTTCTATTAGAAATCTTGAAAAAACATAAGGGAAACATTTCTATCAAGGAGCTGAGCGACGTGACAGCAATCAAAGCGGAAGATATATTAAGCACACTTCAGAGCCTAGAACTGATACAGTACAGGAAAGGACAGCATGTGATCTGTGCGGATCCAAAGGTTCTGGACCGACATCTGAAAGCTGCAGGCCGAGGTGGTCTTGATGTAGATGCTAGCAAACTGATTTGGACACCTTACAAGGACCAGAGTTAAGAGTAAGTACACTCCTCTTGTGCCATTGGATTTGATTTGAGTGTGTAAGTAAAGCGGGCTGTCTTATTCTCCTGAAATGTAAGTGTACTTTACTTGTAAATGTTGAAATCGTACTTGGAATGGTGTTTGTTTACAACTCTTATAATGAGGAAATTTGAAGCAATTTCATAGGTCCATCTTTCTTTTGCT
CDS Sequence
Protein Sequence