Information report for AT5G08650
Gene Details
|
|
Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0065003 — acts upstream of or within — protein-containing complex assembly
- GO:0016070 — acts upstream of or within — RNA metabolic process
- GO:0016114 — acts upstream of or within — terpenoid biosynthetic process
- GO:0045727 — involved in — positive regulation of translation
- GO:0009642 — acts upstream of or within — response to light intensity
- GO:0044271 — acts upstream of or within — cellular nitrogen compound biosynthetic process
- GO:0009507 — located in — chloroplast
- GO:0003729 — enables — mRNA binding
- GO:0009059 — acts upstream of or within — macromolecule biosynthetic process
- GO:0043022 — enables — ribosome binding
- GO:0044283 — acts upstream of or within — small molecule biosynthetic process
- GO:0005886 — located in — plasma membrane
- GO:0009409 — acts upstream of or within — response to cold
- GO:0009639 — acts upstream of or within — response to red or far red light
- SALK_140697 — Increased chlorophyll fluorescence, pale green under normal growth conditions. Photosynthetic activity is impaired, which is reflected in the decreased steady-state levels of chloroplast proteins.
Functional Keywords
Literature and News
- Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray. DOI: 10.1104/pp.104.039909 ; PMID: 15247402
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: A0A1P8B9J8
- EMBL: CP002688
- AlphaFoldDB: A0A1P8B9J8
- EnsemblPlants: AT5G08650.2
- Gramene: AT5G08650.2
- Orthologous matrix: EYSFVGY
- ExpressionAtlas: AT5G08650
- InterPro: IPR000640, IPR000795, IPR004161
- PANTHER: PTHR43512, PTHR43512:SF4
- SUPFAM: SSF50447, SSF52540, SSF54980
- PROSITE: PS00301, PS51722
- Gene3D: 2.40.30.10, 3.30.70.240, 3.30.70.2570
- OrthoDB: A0A1P8B9J8
- SWISS-MODEL: A0A1P8B9J8
- Conserved Domain Database: cd01890, cd03699, cd03709
Sequences
cDNA Sequence
- >AT5G08650.2
ATACTTTGAATTTCTCTCAAAACAGTAGAGAGAGGTGTAGAGAGCTTAGACAGTGCCATGGCCATGGCTTCTGCTATGGACTTATCTTCTCCTCCAACGTTTTTCTTATCCGGAACTTCTACATCTTCCCCATCTCTCCGTCGTCTCTCCTCCATTTCCGTCTCTGGATTCCGCCGTCACTCTAATCGGAAGTTACAGATACTTTGCCAAGCCACAGCTGGAACTGAGCCTCAGAGCGGTCTCTCTGTCTCTGGCTCCAAATTAGCCGCCCGTTCTGGTCAAGACCGTCTTTTGAAGGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTCAGAACAGAGATATGAAGGAGCAGTTTCTTGATAACATGGACTTAGAGAGAGAACGAGGCATCACTATCAAGCTTCAGGCAGCTCGAATGCGTTATGTTTATGAAGATACACCGTTTTGCCTCAACTTGATAGATACTCCAGGTCATGTTGATTTCTCTTACGAGGTTTCCCGATCTCTTGCTGCTTGCGAGGGTGCTCTTCTTGTTGTGGATGCATCCCAGGGTGTGGAAGCACAAACATTGGCTAATGTGTATTTGGCCTTGGAAAACAACCTCGAAATTATTCCCGTTTTAAATAAGATTGACCTTCCAGGCGCTGAGCCAGAGAAAGTTCTCAGGGAGATTGAGGAGGTTATTGGGTTAGATTGTAGCAAAGCGATATTCTGTTCGGCAAAGGAGGGAATTGGTATTACCGAGATTTTGGATGCAATTGTTCAAAGGATACCTGCACCTCTCGATACTGCAGGAAAGCCCTTAAGAGCTTTAATTTTTGACAGTTATTATGATCCATATCGTGGTGTCATTGTATACTTTCGAGTTATCGATGGGAAAGTGAAGAAAGGCGACAGAATTTTTTTCATGGCAAGCGGAAAGGATTATTTTGCGGATGAAGTCGGAGTTCTATCTCCAAATCAAATTCAAGTGGATGAATTATATGCGGGTGAGGTAGGATATATTGCGGCTTCTGTAAGATCTGTTGCAGATGCCAGGGTAGGAGATACAATAACACATTATAGCAGAAAGGCAGAAAGCTCTTTACCTGGTTACGAGGAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCAGTTTCCCGATCTTCGCGATGCATTGGAAAAACTGCAACTCAATGATGCTGCATTGAAGTTTGAGCCTGAAACTTCGAGTGCCATGGGATTTGGCTTTAGATGCGGGTTTTTGGGTCTTCTCCACATGGAAATTGTGCAGGAAAGGCTAGAGAGGGAGTACAACTTAAATCTTATTACCACAGCTCCAAGTGTTGTTTATAGGGTGAACTCTGTAAATGGTGATACTACTTTGTGCTCAAATCCATCACGCCTTCCAGATCCTGGGCAAAGGAAATCGGTCGAGGAGCCATACGTTAAGATTGAACTGCTCACACCAAAAGACTATATTGGTGCGCTTATGGAGCTCGCTCAAGAGAGGAGAGGGGAGTTCAAAGAAATGAAATATATAGCTGAGAACAGAGCTTCAATCCTCTATGAGTTACCTCTTGCAGAGATGGTGGGTGATTTCTTTGACCAATTGAAGTCGAGAACCAAGGGATATGCTAGCATGGAATACTCCGTTATTGGGTACAGGGAAAGTGATCTGATAAAACTCGATATTCTGATTAATGCTGAAATGGTGGAACCTTTGTCAACCATCGTACACAGGGATAAGGCATATTCCGTTGGGAGAGCTTTGACTCAGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAGATTTGAATCTTACACCGAGGGCCTGAGGCACATAAGATGGATTGGATCTTAAACTCTTCTTCTTCTGAGCTTTTAAAAAACTTACTTGTGATCAAATGGGTCTGATGAATTGTGTTCCTGCTTGGTTATCTGACAATGCCCTTAGAATATAGAAACCACGGAAGATGTTTTGACATACACATATACTTGCAGGCTTGTATAGGATCCAAGGTGATTGCTAGTGAAGCACTCTCAGCAATCAGAAAAGATGTTTTGGCAAAATGTTATGGTGGAGATATTTCTCGGAAGAAGAAGCTTCTTAAGAAACAGGCGGCAGGTAAGAAGAGAATGAAAGCCATAGGTAGAGTTGATGTCCCTCAAGAAGCTTTCATGGCCGTTCTCAAACTTGAACGAGAAGTATTGTGACATCTTGTGGGTTTCTCCACTGAGTCACTCAAGATTCACTACATCATATTTTATTTTATCATTTTGTAATATTCTGCAAACTAATTTCACATAATGCAATTATTTTTCGCATTTCATTTGTAAATTGTACTGTTTTTAAAGTTTTTCATACAAAACACATCAAACAAAAAAAACAAAAGCGTAATAGTGTTTATGATCAGATTCACGTTCAACATCTTTAAGATTTCAAAA - >AT5G08650.1
ATACTTTGAATTTCTCTCAAAACAGTAGAGAGAGGTGTAGAGAGCTTAGACAGTGCCATGGCCATGGCTTCTGCTATGGACTTATCTTCTCCTCCAACGTTTTTCTTATCCGGAACTTCTACATCTTCCCCATCTCTCCGTCGTCTCTCCTCCATTTCCGTCTCTGGATTCCGCCGTCACTCTAATCGGAAGTTACAGATACTTTGCCAAGCCACAGCTGGAACTGAGCCTCAGAGCGGTCTCTCTGTCTCTGGCTCCAAATTAGCCGCCCGTTCTGGTCAAGACCGTCTTTTGAAGGTTCCAATTTCGAACATCAGGAATTTTAGTATTATAGCTCATATTGATCATGGGAAATCTACGTTAGCGGATAAGTTGCTTCAGGTGACTGGTACTGTTCAGAACAGAGATATGAAGGAGCAGTTTCTTGATAACATGGACTTAGAGAGAGAACGAGGCATCACTATCAAGCTTCAGGCAGCTCGAATGCGTTATGTTTATGAAGATACACCGTTTTGCCTCAACTTGATAGATACTCCAGGTCATGTTGATTTCTCTTACGAGGTTTCCCGATCTCTTGCTGCTTGCGAGGGTGCTCTTCTTGTTGTGGATGCATCCCAGGGTGTGGAAGCACAAACATTGGCTAATGTGTATTTGGCCTTGGAAAACAACCTCGAAATTATTCCCGTTTTAAATAAGATTGACCTTCCAGGCGCTGAGCCAGAGAAAGTTCTCAGGGAGATTGAGGAGGTTATTGGGTTAGATTGTAGCAAAGCGATATTCTGTTCGGCAAAGGAGGGAATTGGTATTACCGAGATTTTGGATGCAATTGTTCAAAGGATACCTGCACCTCTCGATACTGCAGGAAAGCCCTTAAGAGCTTTAATTTTTGACAGTTATTATGATCCATATCGTGGTGTCATTGTATACTTTCGAGTTATCGATGGGAAAGTGAAGAAAGGCGACAGAATTTTTTTCATGGCAAGCGGAAAGGATTATTTTGCGGATGAAGTCGGAGTTCTATCTCCAAATCAAATTCAAGTGGATGAATTATATGCGGGTGAGGTAGGATATATTGCGGCTTCTGTAAGATCTGTTGCAGATGCCAGGGTAGGAGATACAATAACACATTATAGCAGAAAGGCAGAAAGCTCTTTACCTGGTTACGAGGAAGCTACCCCTATGGTGTTCTGTGGTCTTTTTCCAGTTGACGCTGACCAGTTTCCCGATCTTCGCGATGCATTGGAAAAACTGCAACTCAATGATGCTGCATTGAAGTTTGAGCCTGAAACTTCGAGTGCCATGGGATTTGGCTTTAGATGCGGGTTTTTGGGTCTTCTCCACATGGAAATTGTGCAGGAAAGGCTAGAGAGGGAGTACAACTTAAATCTTATTACCACAGCTCCAAGTGTTGTTTATAGGGTGAACTCTGTAAATGGTGATACTACTTTGTGCTCAAATCCATCACGCCTTCCAGATCCTGGGCAAAGGAAATCGGTCGAGGAGCCATACGTTAAGATTGAACTGCTCACACCAAAAGACTATATTGGTGCGCTTATGGAGCTCGCTCAAGAGAGGAGAGGGGAGTTCAAAGAAATGAAATATATAGCTGAGAACAGAGCTTCAATCCTCTATGAGTTACCTCTTGCAGAGATGGTGGGTGATTTCTTTGACCAATTGAAGTCGAGAACCAAGGGATATGCTAGCATGGAATACTCCGTTATTGGGTACAGGGAAAGTGATCTGATAAAACTCGATATTCTGATTAATGCTGAAATGGTGGAACCTTTGTCAACCATCGTACACAGGGATAAGGCATATTCCGTTGGGAGAGCTTTGACTCAGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAGATTTGAATCTTACACCGAGGGCCTGAGGCACATAAGATGGATTGGATCTTAAACTCTTCTTCTTCTGAGCTTTTAAAAAACTTACTTGTGATCAAATGGGTCTGATGAATTGTGTTCCTGCTTGGTTATCTGACAATGCCCTTAGAATATAGAAACCACGGAAGATGTTTTGACATACACATATACTTGCAGGCTTGTATAGGATCCAAGGTGATTGCTAGTGAAGCACTCTCAGCAATCAGAAAAGATGTTTTGGCAAAATGTTATGGTGGAGATATTTCTCGGAAGAAGAAGCTTCTTAAGAAACAGGCGGCAGGTAAGAAGAGAATGAAAGCCATAGGTAGAGTTGATGTCCCTCAAGAAGCTTTCATGGCCGTTCTCAAACTTGAACGAGAAGTATTGTGACATCTTGTGGGTTTCTCCACTGAGTCACTCAAGATTCACTACATCATATTTTATTTTATCATTTTGTAATATTCTGCAAACTAATTTCACATAATGCAATTATTTTTCGCATTTCATTTGTAAATTGTACTGTTTTTAAAGTTTTTCATACAAAACACATCAAACAAAAAAAACAAAAGCGTAATAGTGTTTATGATCAGATTCACGTTCAACATCTTTAAGATTTCAAAA
CDS Sequence
Protein Sequence