Information report for AT5G08550
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0030371 — enables — translation repressor activity
- GO:0042023 — acts upstream of or within — DNA endoreduplication
- GO:0003677 — enables — DNA binding
- GO:0045892 — acts upstream of or within — negative regulation of DNA-templated transcription
- GO:0000398 — acts upstream of or within — mRNA splicing, via spliceosome
- GO:0005634 — is active in — nucleus
- GO:0005634 — located in — nucleus
- ilp1-1 — Shorter hypocotyls and roots compared to their wild type siblings in darkness. In the light, plants have shorter hypocotyls and smaller cotyledons compared with the wild type, and there was inhibition of root elongation. There is also a reduction in the number of 32C cells in 3 day old seedling hypocotyl cells.
- ilp1-2 — Shorter hypocotyls and roots compared to their wild type siblings in darkness. In the light, plants have shorter hypocotyls and smaller cotyledons compared with the wild type, and there was inhibition of root elongation. There is also a reduction in the number of 32C cells in 3 day old seedling hypocotyl cells.
Functional Keywords
Literature and News
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- A survey of dominant mutations in Arabidopsis thaliana. DOI: 10.1016/j.tplants.2012.08.006 ; PMID: 22995285
- NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis. DOI: 10.15252/embj.201489478 ; PMID: 25568310
- Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana. DOI: 10.1093/nar/gkz526 ; PMID: 31216029
Gene Resources
- UniProt: A0A7G2F812
- EMBL: LR881470
- AlphaFoldDB: A0A7G2F812
- EnsemblPlants: AT5G08550.1
- Gramene: AT5G08550.1
- KEGG: ath:AT5G08550
- Orthologous matrix: MKNICLW
- ExpressionAtlas: AT5G08550
- InterPro: IPR012890, IPR022783
- PANTHER: PTHR12214, PTHR12214:SF0
- SWISS-MODEL: A0A7G2F812
Sequences
cDNA Sequence
- >AT5G08550.1
ATGGGAAGTAACCGTCCTAAGAATTTCCGGCGGCGAGGGGACGACGGCGGCGATGAAATTGACGGTAAAGTTGCTACCCCCTCGTCAAAACCGACTTCGACTCTTTCCTCCTCGAAACCTAAAACACTCTCAGCCTCGGCCCCGAAGAAGAAACTCCTAAGTTTCGCCGACGACGAGGAGGAGGAAGAAGATGGAGCTCCCCGTGTGACGATAAAGCCTAAGAACGGCAGAGACCGTGTCAAATCCTCTTCCCGTCTCGGCGTTTCGGGATCTTCTCACAGACACTCTTCAACCAAGGAACGTCGTCCCGCTTCTTCTAACGTGCTTCCTCAGGCCGGCTCTTATTCGAAAGAGGCGCTGCTCGAGCTCCAGAAGAACACACGGACGCTTCCTTATTCTCGCTCTAGTGCCAATGCCGAGCCGAAGGTAGTGCTTAAGGGTTTAATCAAACCTCCGCAGGATCATGAGCAGCAGAGTCTGAAGGATGTAGTTAAACAGGTTTCGGATTTGGACTTCGATGAGGAAGGGGAAGAAGAGCAGCATGAAGATGCGTTTGCTGATCAGGCAGCGATTATTAGAGCCAAGAAAGAGAGGATGAGGCAGTCACGTTCAGCACCGGCGCCTGATTACATATCACTAGATGGTGGTATCGTAAATCATTCTGCTGTTGAAGGAGTCAGCGACGAGGATGCGGATTTTCAGGGAATTTTCGTCGGTCCGAGACCTCAGAAAGATGATAAGAAAGGTGTGTTTGATTTCGGTGATGAAAATCCTACTGCTAAAGAAACCACGACAAGTAGTATTTATGAGGATGAGGATGAAGAAGATAAGTTGTGGGAGGAGGAGCAATTTAAGAAGGGTATTGGTAAAAGAATGGACGAAGGGTCGCATAGGACTGTAACTAGTAATGGGATTGGCGTGCCTTTGCATTCTAAACAGCAGACACTGCCACAACAGCAACCGCAGATGTATGCTTATCATGCCGGGACACCAATGCCGAATGTTTCTGTCGCTCCTACCATTGGCCCAGCTACTAGTGTTGATACATTACCAATGTCACAACAAGCCGAGCTTGCCAAGAAGGCATTGAAAGACAATGTTAAGAAGCTTAAGGAATCTCATGCAAAAACGTTATCCTCCCTTACCAAGACAGATGAGAATCTGACTGCGTCGTTGATGAGTATCACAGCTCTTGAAAGTTCGCTATCTGCAGCTGGAGATAAGTATGTGTTCATGCAAAAACTCAGAGACTTCATTTCTGTTATCTGTGACTTCATGCAGAATAAGGGTTCATTAATTGAAGAAATTGAAGATCAAATGAAGGAACTTAACGAAAAACATGCTTTATCTATTCTAGAAAGGAGAATTGCAGATAACAATGATGAAATGATAGAGTTGGGGGCCGCAGTGAAAGCAGCAATGACAGTTCTAAACAAACATGGAAGCAGTAGTTCAGTGATTGCTGCTGCCACAGGTGCTGCGTTGGCTGCCTCTACTTCTATAAGGCAGCAGATGAATCAACCAGTTAAGCTTGATGAATTTGGCAGAGACGAAAATCTGCAGAAGCGCAGGGAAGTGGAACAGAGGGCTGCAGCCCGGCAGAAAAGGCGAGCTCGATTTGAAAATAAGCGTGCATCAGCTATGGAGGTTGATGGACCTTCTCTGAAAATAGAAGGAGAATCAAGCACTGATGAGAGTGACACTGAGACTTCAGCTTATAAGGAGACAAGAGATAGCTTACTTCAGTGTGCTGATAAGGTCTTTAGTGATGCATCTGAGGAGTACTCCCAGCTTTCAAAGGTGAAGGCGAGATTTGAGAGGTGGAAGCGAGACTATTCATCAACTTATCGTGATGCTTACATGTCTTTGACCGTTCCTTCCATCTTTTCACCTTATGTAAGACTGGAGCTTTTGAAATGGGATCCTCTTCATCAAGATGTGGATTTCTTTGACATGAAATGGCATGGGTTGCTTTTTGATTACGGGAAGCCAGAAGATGGGGATGATTTTGCACCAGATGATACTGATGCCAACCTTGTCCCTGAGCTAGTAGAAAAGGTTGCAATTCCAATTTTGCACCATCAGATAGTTCGTTGCTGGGATATACTTAGCACCCGGGAGACAAGAAATGCTGTTGCTGCTACAAGCTTGGTGACAAATTATGTTTCTGCTTCGAGTGAGGCCTTAGCAGAACTATTTGCTGCTATTCGTGCTCGCCTTGTTGAAGCCATTGCAGCTATTAGTGTTCCGACATGGGATCCTCTGGTATTGAAGGCTGTACCTAATACTCCACAAGTTGCCGCATATAGGTTTGGGACATCAGTCCGTCTTATGAGAAATATATGTATGTGGAAAGACATCCTGGCGCTTCCAGTGTTGGAGAACTTGGCTCTTAGTGACCTTTTGTTTGGAAAAGTTCTACCCCATGTCAGAAGCATTGCATCAAATATCCATGATGCTGTGACAAGAACTGAAAGAATCGTTGCTTCTTTGTCTGGAGTGTGGACAGGACCAAGCGTCACACGAACCCACAGTCGTCCGCTGCAACCTCTTGTGGATTGTACTCTGACACTTAGAAGAATTCTCGAGAAAAGGCTTGGCTCAGGACTGGACGATGCGGAAACCACTGGTCTCGCCCGCAGATTAAAGAGAATACTAGTCGAGCTCCATGAACATGACCACGCCAGGGAAATTGTCAGAACATTCAATCTTAAGGAGGCAGTTTGACCAAAAGTTTATTGATGGGAAACTGGAAAGTCAACACAGAAATCTTTAGCCTCAGGTTATCAGGCTCACCTTTCGGGCTGTACCAGCAAAGGCTCATCGATTTCAACATCGAGGATTACAAGATTTTCCCTAGGATTATTAGGCTAGCACCAAAACCTTCCGGAATCCATTTTCAGACACAGAAGAGTTTTAGTACTTTGGCTTAATGTAAGTGTAACCTCTTGTGGTTGTAGAAAACCTTATAATAAATATAAGCTAAAGTATCTCGAGTCTTTTATTTTTCCCTTTATATCTGTATGAGTTTAGATTTAGCAAAGACAATATTATTTCTATGAATAT
CDS Sequence
Protein Sequence