Information report for AT5G08390
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0005515 — enables — protein binding
- GO:0080008 — part of — Cul4-RING E3 ubiquitin ligase complex
- GO:0051013 — acts upstream of or within — microtubule severing
- GO:0008352 — part of — katanin complex
- GO:0051013 — involved in — microtubule severing
- GO:0007019 — involved in — microtubule depolymerization
- GO:0005634 — located in — nucleus
- GO:0051510 — involved in — regulation of unidimensional cell growth
- GO:0043622 — acts upstream of or within — cortical microtubule organization
- GO:0015630 — located in — microtubule cytoskeleton
Functional Keywords
Literature and News
- Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. DOI: 10.1186/1471-2164-7-81 ; PMID: 16615871
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Systematic identification of functional plant modules through the integration of complementary data sources. DOI: 10.1104/pp.112.196725 ; PMID: 22589469
- KTN80 confers precision to microtubule severing by specific targeting of katanin complexes in plant cells. DOI: 10.15252/embj.201796823 ; PMID: 28978669
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
Gene Resources
- UniProt: A0A5S9Y2I7
- EMBL: CACSHJ010000096
- AlphaFoldDB: A0A5S9Y2I7
- EnsemblPlants: AT5G08390.1
- Gramene: AT5G08390.1
- KEGG: ath:AT5G08390
- Orthologous matrix: TYADIPN
- ExpressionAtlas: AT5G08390
- InterPro: IPR001680, IPR015943, IPR019775
- PANTHER: PTHR19845, PTHR19845:SF21
- SUPFAM: SSF50978
- PROSITE: PS00678, PS50082, PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A5S9Y2I7
- SWISS-MODEL: A0A5S9Y2I7
- Conserved Domain Database: cd00200
Sequences
cDNA Sequence
- >AT5G08390.1
AGAAGAGGTAAGTAAAATAATAAAGCAGCTCCCTTTCTCTCTCTGCTTCCTTGTGTGTGTCTGTGTGTCATTCACATCTCCCTCCTCTCTTCTTCACCATTAGAGGAGAGAAAACACACTTTCAAATATATATATAAGTATAACTCATCCAACAACTCCATTTTTATCTTCTTCGTAAAGGAAACAACGACGTTTACTCCAAGATACTGTTCCTCAATCTGCATTCTTTTCCAATCGATCTAAATTTGGTTTCTGTGCTGAGATTGGCTTTCTGGGTGTTGCTGATTGCAAATTGCTGTTGACAAGCTGAGATCTTAAGGTGCTTTTGCAGTAGCTGAGATTTTTCGAGGTTTTTGTCTGTTCGTGAGTAGAAGAATTTGGATGGTCGCCGATGTAAGGGTTTCGTTTCCGCTATGAACACCAAGCGCGCCTACAAGCTCCAGGAATTTGTGGCACATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAGGGTTCTCGTTACAGGCGGAGAAGATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCAACGCCATCCTGAGCTTGTATGGGCACTCTAGCGGGATTGATTCAGTAACATTTGATGCTTCGGAAGGCTTAGTAGCAGCAGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGGAAGCAAAGGTTGTCAGAACTCTCACTGGTCACAGGTCAAACTGCGTATCCGTGAATTTTCACCCTTTTGGTGAGTTTTTTGCTTCTGGTTCTCTAGACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATACTTACAAGGGTCACACTAGAGGGGTCAACGTACTCAGATTCACTCCAGATGGTCGTTGGATTGTATCTGGAGGAGAAGATAATGTTGTCAAGGTGTGGGATTTGACTGCTGGAAAACTTTTGCATGAGTTTAAGAGTCATGAAGGGAAAATTCAGAGTCTAGATTTTCATCCCCATGAATTTCTGCTGGCAACAGGTTCAGCTGATAAGACTGTAAAATTCTGGGACCTTGAAACATTCGAGCTTATTGGTTCTGGTGGAACTGAGACTACTGGGGTCCGTTGCCTAACCTTTAATCCAGATGGAAAGAGTGTGCTTTGTGGATTGCAAGAAAGTCTTAAAATTTTCTCATGGGAGCCAATAAGATGTCATGATGGAGTGGATGTTGGATGGTCAAACTTGTCGGATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTAGGCGTTTGGGTTGTAGACCTCTCGCGCACTGAGCCTATGAGTGGAGGCGCCACTCAGTCAAATTCTCATCCAGAGAAAACATCAGGCTCAGGCAGAGATCAAGCAGGTCTGAACGATAACAGCTCAAAGGTTATTCTCGGAAAGTTGCCTGGTTCCCAGAAAGTGGATCCTTTATTGAAGGAAACAAAGTCTCTTGGAAAATTATCAGTTTCTCAAAACTCGGATCCGTTGCCAAAAGATACAAAGTCTACTGGAAGGTCATCAGTATCTCAAAGTTCAGATCCTTTGGTAAAGGAACCAAAGCCTCTCGGAAGGTTTTCAGCTACTCACAGCTCAGACACAGTAAAAGAGTCAAGAACCCTGTCATCCACAGGAAGTGTATCAGACTCTCCTCACAGGGTTACTTTGACCAGTGCTCCAAAAAGTGCTTCTGGTATTTCTACAGTTGTCCCTAATGCTGCAGCCTCAAAGAGAAATTTTGGAAAAGCTAACCCAAAGGCGAATCCTCCAGTAGTCAATAAAGAGGATTATTTTCCAGTAATCGTCCCCAGAACGGAGCCAATAATTGAGCAGGCATCTGAATCCAGAGCAGAACTTGACATTATCGGAAGAACTATGCCATATTCGCTGCAGTCAAAGGCCGCTGATTCTCGAAGGCTGTCGAGCAGCAGAAATGAGCCAGATCTACCAACCAGTTCGCTTCTTGAAAGGTCTCAGTCTCAACCTATAGAACCAATCACTTTACAAGATGGGAATACATATCCTAGTGACGAAGGTGGCTCCTGGGATACAGCTGAGAGAACAAATAAAGAGAGCAAATGCAGGGTATTTGGAAGGTTTAATTCAAGATCACTGGTGAGATCACCTCCGAGAAATCACGACGAAAACTCTGACTTGATTAGCTATAATGCAAATAGAGATTCAAGTCCTACTGAAAGCCGAAAAGGAGGAAGACTGCATTCCCTCGTTCTAAATAGGGAAAGAAGAGGAAGATTTTCTAACTTTGAGGGTCCTGTTTCGAGTTCTTCTGGTGGAAATATGACTGCACCAAACAGTCGCCCTTCCAATATGCTCAAGCAGAGAGGAAATCATGTGCCAGTTGATCAAGGAATCACTTCAGCTAGCGAAGAAGATATAGTTGCAGACATAATGGGGCAACACGATCAATTTGTCAGCTCTATGCACTCTCGTTTGGCTAAGTTACAGGTCGTCCGTAGATATTGGGAAAGAAATGATATTAAAAACTCGATAAGTTCAATAGAGAAGATGGCTGATAATGCTGTAATTGCGGATGTACTACTTATAGTAAACGAGAGACCTGAGATTTTGACACTGGATACCTGTACCTCTCTTCTCCCCCTTTTGACAGCTCTTCTAGGGAGCAACATGGATAGTCATTTGAGTGTCTGCCTTGATTTGCTGCTTAAGCTGGTAAGAATGTATGGGTCACAAATTTACTCGTCGCTTTCCGCTCCCTCATCTGTTGGTGTAGATATTGAGGCTGAGCAAAGGATGGAGCGGTACAGTTGTTGCTTTGTCGAGTTCGAGAAAATCAAGGCTTGCCTTCCCTCTTTAGCAAGAAGAGGAAATTTGGTGGCCAAGACTCTCCATGAACTCAACTTAACATTTCAAGAAGTTTCATCGTGATACTTTTTGGATGTGGATTTGGTTCCAATGTGGAGTTTAACAGTACTAAAGCCTAACTCTACCAAGCTAACCAATAGAGTCTATGGAAGACTAACTAACCCTCGCGTATTGCGTATGGCCACTGCTCGGGTCCGTAACCTTTGCCTTGCGTATGGATACGGTACTGTCTCTCGTTTCAAGCTAACTTGGTGTGTAAAGAGCCATTTCGGTTGTTGTATTGATCTAGGTTATCATTTCTTCCACACTGTTTAGCTATTTGTTCTTAAGAGCACAAAAAAGAAGCCTATATTTAACAAAACTGTTTTGTAGAAGATTCAGATCTTGAAGTACTTATACCCAAAATCAGGATTTGTCATTCCCTCT
CDS Sequence
Protein Sequence