Information report for AT5G08380
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0098542 — acts upstream of or within — defense response to other organism
- GO:0009505 — located in — plant-type cell wall
- GO:0071407 — acts upstream of or within — cellular response to organic cyclic compound
- GO:0010035 — acts upstream of or within — response to inorganic substance
- GO:0005975 — involved in — carbohydrate metabolic process
- GO:0099503 — located in — secretory vesicle
- GO:0048046 — located in — apoplast
- GO:0016070 — acts upstream of or within — RNA metabolic process
- GO:1901701 — acts upstream of or within — cellular response to oxygen-containing compound
- GO:0031347 — acts upstream of or within — regulation of defense response
- GO:0009505 — is active in — plant-type cell wall
- GO:1901137 — acts upstream of or within — carbohydrate derivative biosynthetic process
- GO:0004557 — enables — alpha-galactosidase activity
- GO:0033993 — acts upstream of or within — response to lipid
- GO:0044085 — acts upstream of or within — cellular component biogenesis
Functional Keywords
Literature and News
- Co-immunoprecipitation of Hsp101 with cytosolic Hsc70. DOI: 10.1016/j.plaphy.2004.10.006 ; PMID: 15763661
- Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. DOI: 10.1002/pmic.200400882 ; PMID: 15593128
- A proteomic approach to apoplastic proteins involved in cell wall regeneration in protoplasts of Arabidopsis suspension-cultured cells. DOI: 10.1093/pcp/pci089 ; PMID: 15769804
- Transcriptional profile of the Arabidopsis root quiescent center. DOI: 10.1105/tpc.105.031724 ; PMID: 15937229
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays. DOI: 10.1007/s10142-005-0014-z ; PMID: 16463051
- Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. DOI: 10.1186/1471-2164-7-81 ; PMID: 16615871
- An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers. DOI: 10.1186/1471-2229-6-16 ; PMID: 16928278
- Exploiting the wild crucifer Thlaspi arvense to identify conserved and novel genes expressed during a plant's response to cold stress. DOI: 10.1007/s11103-006-9080-4 ; PMID: 16972165
- Cloning, functional expression, and characterization of the raffinose oligosaccharide chain elongation enzyme, galactan:galactan galactosyltransferase, from common bugle leaves. DOI: 10.1104/pp.103.036210 ; PMID: 15034167
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. DOI: 10.1002/pmic.200400882 ; PMID: 15593128
- A proteomic approach to apoplastic proteins involved in cell wall regeneration in protoplasts of Arabidopsis suspension-cultured cells. DOI: 10.1093/pcp/pci089 ; PMID: 15769804
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. DOI: 10.1016/j.phytochem.2008.04.007 ; PMID: 18538804
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A1P8BFT2
- EMBL: CP002688
- AlphaFoldDB: A0A1P8BFT2
- EnsemblPlants: AT5G08380.2
- Gramene: AT5G08380.2
- ExpressionAtlas: AT5G08380
- InterPro: IPR000111, IPR002241, IPR013785
- PANTHER: PTHR11452, PTHR11452:SF80
- SUPFAM: SSF51445
- PROSITE: PS00512
- Gene3D: 3.20.20.70
- OrthoDB: A0A1P8BFT2
- SWISS-MODEL: A0A1P8BFT2
- Conserved Domain Database: cd14792
Sequences
cDNA Sequence
- >AT5G08380.2
ATAGAACACTCTTCTAGTCTCCTAGTCTTCTTCTACTACAAAGTACAAAGCAGTGTTCGTCAACTATCTTCTTCTCACTCTGTTTTCGTTTAGAGAGATTTTGCAGAGATGTCGAGACGAGCAATGGTGATAAAGATGCCAATACTTATGATACTGATTTCATCAATGGTGATGACGATGGTCGAGTCTTCGAGATCAGTTAATAATGGTCATGACGATTCTGAGATCTTACGAAGACACTTGCTCACTAATGGCCTCGGAGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTTAGCTGCAACATAGATGAAAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAGGGAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGAATTAAAGCGGTTGCGGATTATGTTCACAGTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTATTTCACTTGCAGTAAAACCATGCCAGGTTCTTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGGGAATTGATTACTTGAAGTATGACAACTGCAACAGCGATGGCTCTAAACCTACTGTCAGGTATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCATTGTGTGAATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCACTAATGACATTAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCTACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTCCTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATGGAGATTGTCGCCAACAAGGAAGTCATTGCTATTAATCAAGGTACTTGATTACTGTTTAGCCATCATATGTCCTCTTTGAACCATGTTTGAATATATACTTTTAAGAAAATAGAAACCGTTTCTTGTAGATCCACATGGTGTTCAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGTTACAGAGTAGCTTTGCTTCTATTGAACCGTGGACCATCGCGAACTTCGATTACTGCTCTTTGGGAGGATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAGCACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGTAAGTTGTATGTTCTCAAACCTGTTGCCTGAAAATACATGTGTATAGAGAGAGTTAGTGTGGCTACGTCACGTTGTATTCTCCAGTTATTCTGTAAAAACAATAAGGGTTCGTCTCAAATTAAATCTCCACAGATGTTCTCCAATAAATTGTTCGAAACGAAAATTTTGTCCATATAATAATGAAAACTCTTCGCTTTTTTAATA - >AT5G08380.1
ATAGAACACTCTTCTAGTCTCCTAGTCTTCTTCTACTACAAAGTACAAAGCAGTGTTCGTCAACTATCTTCTTCTCACTCTGTTTTCGTTTAGAGAGATTTTGCAGAGATGTCGAGACGAGCAATGGTGATAAAGATGCCAATACTTATGATACTGATTTCATCAATGGTGATGACGATGGTCGAGTCTTCGAGATCAGTTAATAATGGTCATGACGATTCTGAGATCTTACGAAGACACTTGCTCACTAATGGCCTCGGAGTCACTCCTCCCATGGGGTGGAATAGCTGGAACCATTTTAGCTGCAACATAGATGAAAAAATGATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAGGGAAGTCTGGTGCCAAAGAAGTCAACTTTCCCTTCTGGAATTAAAGCGGTTGCGGATTATGTTCACAGTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTATTTCACTTGCAGTAAAACCATGCCAGGTTCTTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGGGAATTGATTACTTGAAGTATGACAACTGCAACAGCGATGGCTCTAAACCTACTGTCAGGTATCCAGTGATGACTCGAGCTCTGATGAAATCTGGCCGCCCCATCTTTCACTCATTGTGTGAATGGGGAGATATGCATCCAGCTCTATGGGGATCTCCAGTAGGCAACAGTTGGAGAACCACTAATGACATTAAAGATACTTGGCTTAGTATGATCTCAATAGCAGACATGAATGAAGTCTACGCTGAGCATGCAAGACCTGGTGGCTGGAACGACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGGCTCCTCTTCTACTTGGTTGTGACATAAGAAACATGACCAAAGAAACAATGGAGATTGTCGCCAACAAGGAAGTCATTGCTATTAATCAAGGTACTTGATTACTGTTTAGCCATCATATGTCCTCTTTGAACCATGTTTGAATATATACTTTTAAGAAAATAGAAACCGTTTCTTGTAGATCCACATGGTGTTCAGGCCAAGAAAGTTAGAATGGAAGGCGATCTCGAGGTTTGGGCAGGACCATTGTCAGGTTACAGAGTAGCTTTGCTTCTATTGAACCGTGGACCATCGCGAACTTCGATTACTGCTCTTTGGGAGGATATTGAGATCCCTGCAAATAGCATCGTTGAAGCCAGAGATCTATGGGAGCACCAGACATTGAAGCAAAAGTTTGTGGGGAACTTGACAGCAACAGTGGATTCTCATGCGTGTAAGTTGTATGTTCTCAAACCTGTTGCCTGAAAATACATGTGTATAGAGAGAGTTAGTGTGGCTACGTCACGTTGTATTCTCCAGTTATTCTGTAAAAACAATAAGGGTTCGTCTCAAATTAAATCTCCACAGATGTTCTCCAATAAATTGTTCGAAACGAAAATTTTGTCCATATAATAATGAAAACTCTTCGCTTTTTTAATA
CDS Sequence
Protein Sequence