Information report for AT5G08290
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. DOI: 10.1093/pcp/pce021 ; PMID: 11230571
- High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. DOI: 10.1111/j.1365-313X.2004.02281.x ; PMID: 15610358
- Virus induction of heat shock protein 70 reflects a general response to protein accumulation in the plant cytosol. DOI: 10.1104/pp.104.058958 ; PMID: 15805473
- Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. DOI: 10.1104/pp.105.063743 ; PMID: 16166256
- Gene expression profiling of the different stages of Arabidopsis thaliana trichome development on the single cell level. DOI: 10.1016/j.plaphy.2007.11.001 ; PMID: 18160300
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Identification and testing of superior reference genes for a starting pool of transcript normalization in Arabidopsis. DOI: 10.1093/pcp/pcq128 ; PMID: 20798276
- Reference genes for normalizing transcription in diploid and tetraploid Arabidopsis. DOI: 10.1038/srep06781 ; PMID: 25345678
- Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. DOI: 10.1093/pcp/pce021 ; PMID: 11230571
- Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. DOI: 10.1007/s00425-008-0706-4 ; PMID: 18273637
Gene Resources
- UniProt: A0A178UL96
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UL96
- EnsemblPlants: AT5G08290.1
- Gramene: AT5G08290.1
- KEGG: ath:AT5G08290
- Orthologous matrix: GMYELYD
- ExpressionAtlas: AT5G08290
- InterPro: IPR004123, IPR036249
- PANTHER: PTHR12052, PTHR12052:SF13
- SUPFAM: SSF52833
- Gene3D: 3.40.30.10
- OrthoDB: A0A178UL96
- SWISS-MODEL: A0A178UL96
- Conserved Domain Database: cd02954
Sequences
cDNA Sequence
- >AT5G08290.1
AACGCTTTATGCGGTTCACGCGTGGAATCGACGCGCCGTCACCGTCAACAAAATTGGGAAGAGAATATAAAATTAGGGCAAGAGAGAAAAAAGGTTGAATCGAAACAGATCGGAAAATCGTCGAGAGAGAGAGAGAGAGAGAGAATGTCGTATCTTCTTCCACATCTGCACTCCGGTTGGGCTGTTGATCAGTCGATTCTGGCCGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGACTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTTGCGTCTGTTGCTGAGACGATTAAGAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTTCCAGACTTCAACACCATGTACGAGCTGTACGATCCTTCTACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGATCTTGGAACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCATTGATATCATTGAGACTGTCTACCGTGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCCAAAAGATTACTCCACCAAATACCGTTACTAATCGAGCTTCCCAACACTATCTAGTTTGTTAAAACCATTGAGTCTAGTGATTCTGGTCAGCTGAAATATCCCGTGAACTGGTTTCATTTCATATATGCTTTGATGATGATTGTGATTCTGGTTTTTGCTTACTGTTTCGGTTGTTCTCCATTTATGTATGTAACTACTTGCTTCGAACATGATTCAGTGAAATGAAATTTGGAAGCCGTTGGGTTTATGTATATGCATCTTTGATCTTCCTGGGTTATGTATATGTGACACCATTTGTCTACCAAGTACCAACGATGGATACGAAAATGAAACTTTTTACTA - >AT5G08290.2
AACGCTTTATGCGGTTCACGCGTGGAATCGACGCGCCGTCACCGTCAACAAAATTGGGAAGAGAATATAAAATTAGGGCAAGAGAGAAAAAAGGTTGAATCGAAACAGATCGGAAAATCGTCGAGAGAGAGAGAGAGAGAGAGAATGTCGTATCTTCTTCCACATCTGCACTCCGGTTGGGCTGTTGATCAGTCGATTCTGGCCGAGGAAGAGCGTCTCGTCGTCATTCGTTTCGGCCATGACTGGGATGAGACCTGTATGCAGATGGATGAGGTGCTTGCGTCTGTTGCTGAGACGATTAAGAACTTTGCAGTCATTTATCTGGTGGACATCACTGAGGTTCCAGACTTCAACACCATGTACGAGCTGTACGATCCTTCTACGGTCATGTTCTTCTTCAGGAACAAGCACATCATGATCGATCTTGGAACTGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCATTGATATCATTGAGACTGTCTACCGTGGTGCAAGGAAGGGTCGTGGGTTGGTGATTGCTCCAAAAGATTACTCCACCAAATACCGTTACTAATCGAGCTTCCCAACACTATCTAGTTTGTTAAAACCATTGAGTCTAGTGATTCTGGTCAGCTGAAATATCCCGTGAACTGGTTTCATTTCATATATGCTTTGATGATGATTGTGATTCTGGTTTTTGCTTACTGTTTCGGTTGTTCTCCATTTATGTATGTAACTACTTGCTTCGAACATGATTCAGTGAAATGAAATTTGGAAGCCGTTGGGTTTATGTATATGCATCTTTGATCTTCCTGGGTTATGTATATGTGACACCATTTGTCTACCAAGTACCAACGATGGATACGAAAATGAAACTTTTTACTA
CDS Sequence
Protein Sequence