Information report for AT5G06420
Gene Details
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Functional Descriptions
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
- Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. DOI: 10.1186/1471-2164-9-44 ; PMID: 18221561
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
Gene Resources
- UniProt: A0A5S9Y1W5
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A5S9Y1W5
- EnsemblPlants: AT5G06420.1, AT5G06420.2
- Gramene: AT5G06420.1, AT5G06420.2
- KEGG: ath:AT5G06420
- Orthologous matrix: RGMNNYQ
- ExpressionAtlas: AT5G06420
- InterPro: IPR000571, IPR001841, IPR013083
- PANTHER: PTHR12930, PTHR12930:SF0
- SUPFAM: SSF57850, SSF90229
- PROSITE: PS00518, PS50089, PS50103
- Gene3D: 3.30.40.10, 4.10.1000.10
- OrthoDB: A0A5S9Y1W5
- SWISS-MODEL: A0A5S9Y1W5
- Conserved Domain Database: cd16539
Sequences
cDNA Sequence
- >AT5G06420.2
AAAACCCAATTCAAAGGTCTCATCTTTTGCATCAATTCAACTAAAAGTTTCAATCTTTCTATCATTTCTCCTCAGCCCAACAAAACAGGAATCCACATTATTATCATGGTTCTCCTCAAACCCTAGATTCTAATCAACTCGTTACACACTTACAGGCCAAAAATCTGAAAATAGTCGACGGAGTCATCAACAGGTTGAATGCTACGGCATGAGTTACAGAACAAAAAGGCAGCTTTCTCGCCACAGTTCCAGCATCCGGCGCCAGATTCCGAGCAGAAAACTCTCCCGGAGAATCGGAGTCGTCCCTCAGCTGAAGAATGATGTTGCAGAGATTCGCGAGGCAATTGGGTTTGTGATTGAATCGTCGCGAGTGAATTACACTGGTTAGTTGAAGGATAGGTCCGTCTAATAAGGGTGGAGATGGAAGCCACCATCGTCTTCGTTTTCTTCATTACGGGATCAGGAGAGGTTTTGGCTCTGGAGAGATCGTCGTGTATCGATTACTACTACTACTTGTCCCTAATCGAACCAGACCGAGTAAATTGGTTTAGTGTTACAAGACCAAAACCAGATATTTATCTTATCGTACCAGACCGAGTAAATTCGCCGCTTATCGCCTCCGACCCGGACGGTGAATCGGAATACCTTCTGGGTTACCGGGTCAACCGGGTCACTGGTTACTCTACATGGAACCATTCGTTGTTAAGGAGAACATCGTCGCATCCGCTTCTTCGCCGATGAAGAAGCGACGGATCGATCACACTGAGTCAGCTGATGGTTCTGCGATTAACGCTTCTAACTCTAGTAGCATCGGTGGTAACGATACGGTGATGAACATGGCGGAGTTTGGTAACGACAACTCCAACAATCAGGAGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAAAACATAAGGAAAAGAACCATTGACGCTGATGAAGAAGACGGAGATTCGAAAAGCGAAAGCTCTATTTTACAAAATCTAAAGAAAGTTGCAAAACCCGATAGCAACTTGTACTTTTCTTCTGGACCATCTACTAGAACGAGTGGAGCTCCTGAGAGACCCGTTTTTCACTACGATTCATCCAAGGAAATCCAGGTTCAGAACGACAGTGGAGCAACAGCGACCCTTGAAACTGAAACCGACTTCAATCAAGACGCTCGAGCTATCCGTGAAAGAGTTCTTAAAAAAGCAGACCATGCATTGAAGGGGAATAAGAAAAAGGCTTCAGATGAGAAGCTGTACAAAGGAATTCATGGATATACAGATCACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCTGGAGGCTCACACGGGCCTTTAAGAGCTTCTGCTCACATCAGAGTATCGGCTAGATTCGATTACCAGCCAGACATTTGCAAGGATTACAAGGAAACCGGATACTGTGGATATGGAGATTCGTGTAAGTTCTTGCATGACCGTGGGGATTACAAGCCGGGATGGCAGATAGAGAAAGAGTGGGAAGAGGCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGACGATGATGAGGCTGACAAGGATAGCGACGAAGACGAAAATGCATTGCCCTTTGCTTGCTTCATTTGCAGGGAGCCTTTTCTTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCATTGTGCTTTAAAGCATCACACGAAGAACAAGAAATGCTTTGTGTGTAACCAACCAACAATGGGGATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGAACGGAGTAAAGCTGAACAAGGATTGTGAAGTCCTTCTTTCACAGGACAAAAAGGCAAAAACTATACATTTGATTATTTGCTTGAGGAAAGCTTTTTGTTTTGTTGTACTCACTGGCCTATATACTGTATATTCGGATGACGATGGTTGTTTCAAACTGATTAACTTTTAAATTTAAACAAACTGAAAAAGTTTTGGAG - >AT5G06420.1
AAAACCCAATTCAAAGGTCTCATCTTTTGCATCAATTCAACTAAAAGTTTCAATCTTTCTATCATTTCTCCTCAGCCCAACAAAACAGGAATCCACATTATTATCATGGTTCTCCTCAAACCCTAGATTCTAATCAACTCGTTACACACTTACAGGCCAAAAATCTGAAAATAGTCGACGGAGTCATCAACAGGTTGAATGCTACGGCATGAGTTACAGAACAAAAAGGCAGCTTTCTCGCCACAGTTCCAGCATCCGGCGCCAGATTCCGAGCAGAAAACTCTCCCGGAGAATCGGAGTCGTCCCTCAGCTGAAGAATGATGTTGCAGAGATTCGCGAGGCAATTGGGTTTGTGATTGAATCGTCGCGAGTGAATTACACTGGTTAGTTGAAGGATAGGTCCGTCTAATAAGGGTGGAGATGGAAGCCACCATCGTCTTCGTTTTCTTCATTACGGGATCAGGAGAGGTTTTGGCTCTGGAGAGATCGTCGTGTATCGATTACTACTACTACTTGTCCCTAATCGAACCAGACCGAGTAAATTGGTTTAGTGTTACAAGACCAAAACCAGATATTTATCTTATCGTACCAGACCGAGTAAATTCGCCGCTTATCGCCTCCGACCCGGACGGTGAATCGGAATACCTTCTGGGTTACCGGGTCAACCGGGTCACTGGTTACTCTACATGGAACCATTCGTTGTTAAGGAGAACATCGTCGCATCCGCTTCTTCGCCGATGAAGAAGCGACGGATCGATCACACTGAGTCAGCTGATGGTTCTGCGATTAACGCTTCTAACTCTAGTAGCATCGGTGGTAACGATACGGTGATGAACATGGCGGAGTTTGGTAACGACAACTCCAACAATCAGGAGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAAAACATAAGGAAAAGAACCATTGACGCTGATGAAGAAGACGGAGATTCGAAAAGCGAAAGCTCTATTTTACAAAATCTAAAGAAAGTTGCAAAACCCGATAGCAACTTGTACTTTTCTTCTGGACCATCTACTAGAACGAGTGGAGCTCCTGAGAGACCCGTTTTTCACTACGATTCATCCAAGGAAATCCAGGTTCAGAACGACAGTGGAGCAACAGCGACCCTTGAAACTGAAACCGACTTCAATCAAGACGCTCGAGCTATCCGTGAAAGAGTTCTTAAAAAAGCAGACCATGCATTGAAGGGGAATAAGAAAAAGGCTTCAGATGAGAAGCTGTACAAAGGAATTCATGGATATACAGATCACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCTGGAGGCTCACACGGGCCTTTAAGAGCTTCTGCTCACATCAGAGTATCGGCTAGATTCGATTACCAGCCAGACATTTGCAAGGATTACAAGGAAACCGGATACTGTGGATATGGAGATTCGTGTAAGTTCTTGCATGACCGTGGGGATTACAAGCCGGGATGGCAGATAGAGAAAGAGTGGGAAGAGGCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGACGATGATGAGGCTGACAAGGATAGCGACGAAGACGAAAATGCATTGCCCTTTGCTTGCTTCATTTGCAGGGAGCCTTTTCTTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCATTGTGCTTTAAAGCATCACACGAAGAACAAGAAATGCTTTGTGTGTAACCAACCAACAATGGGGATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGAACGGAGTAAAGCTGAACAAGGATTGTGAAGTCCTTCTTTCACAGGACAAAAAGGCAAAAACTATACATTTGATTATTTGCTTGAGGAAAGCTTTTTGTTTTGTTGTACTCACTGGCCTATATACTGTATATTCGGATGACGATGGTTGTTTCAAACTGATTAACTTTTAAATTTAAACAAACTGAAAAAGTTTTGGAG
CDS Sequence
Protein Sequence