Gene Details:

• Gene ID: AT5G06140
• Gene Symbol: ATSNX1, SNX1
• Gene Name: ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1
• Description: sorting nexin 1;(source:Araport11)
• TAIR Accession: locus:2152850
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G06140.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

Gene Ontology:

• GO:0008333  — acts upstream of or within — endosome to lysosome transport
• GO:0048364  — acts upstream of or within — root development
• GO:0006623  — acts upstream of or within — protein targeting to vacuole
• GO:0006896  — acts upstream of or within — Golgi to vacuole transport
• GO:0030904  — part of — retromer complex
• GO:0005515  — enables — protein binding
• GO:0005768  — is active in — endosome
• GO:0009958  — acts upstream of or within — positive gravitropism
• GO:0043231  — located in — intracellular membrane-bounded organelle
• GO:0035091  — enables — phosphatidylinositol binding
• GO:0009507  — located in — chloroplast
• GO:0005771  — located in — multivesicular body
• GO:0016020  — located in — membrane
• GO:0005886  — located in — plasma membrane
• GO:0005768  — located in — endosome

Function-related keywords:

• root ,  root

Literature:

• The maize genome contains a helitron insertion.   DOI:  10.1105/tpc.008375 ;  PMID:  12566579
• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Learning the lipid language of plant signalling.   DOI:  10.1016/j.tplants.2004.06.008 ;  PMID:  15358268
• Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth.   DOI:  10.1104/pp.105.060558 ;  PMID:  15894741
• Comparative analyses of the gene expression profiles of Arabidopsis intact plant and cultured cells.   DOI:  10.1007/s10529-005-8456-x ;  PMID:  16132859
• Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control.   DOI:  10.1104/pp.106.079418 ;  PMID:  16632591
• Plant retromer, localized to the prevacuolar compartment and microvesicles in Arabidopsis, may interact with vacuolar sorting receptors.   DOI:  10.1105/tpc.105.035907 ;  PMID:  16582012
• AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins.   DOI:  10.1093/pcp/pcj103 ;  PMID:  16926167
• AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis.   DOI:  10.1038/nature05046 ;  PMID:  16936718
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Differential degradation of PIN2 auxin efflux carrier by retromer-dependent vacuolar targeting.   DOI:  10.1073/pnas.0808073105 ;  PMID:  19004783
• Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.   DOI:  10.1104/pp.109.152413 ;  PMID:  20118269
• BLOS1, a putative BLOC-1 subunit, interacts with SNX1 and modulates root growth in Arabidopsis.   DOI:  10.1242/jcs.069732 ;  PMID:  20971704
• CLASP interacts with sorting nexin 1 to link microtubules and auxin transport via PIN2 recycling in Arabidopsis thaliana.   DOI:  10.1016/j.devcel.2013.02.007 ;  PMID:  23477787
• Phosphatidylinositol 3-Phosphate 5-Kinase, FAB1/PIKfyve Kinase Mediates Endosome Maturation to Establish Endosome-Cortical Microtubule Interaction in Arabidopsis.   DOI:  10.1104/pp.15.01368 ;  PMID:  26353760
• Differential Gene Expression and Protein Phosphorylation as Factors Regulating the State of the Arabidopsis SNX1 Protein Complexes in Response to Environmental Stimuli.   DOI:  10.3389/fpls.2016.01456 ;  PMID:  27725825
• The retromer, sorting nexins and the plant endomembrane protein trafficking.   DOI:  10.1242/jcs.203695 ;  PMID:  29061884
• The Inhibitor Endosidin 4 Targets SEC7 Domain-Type ARF GTPase Exchange Factors and Interferes with Subcellular Trafficking in Eukaryotes.   DOI:  10.1105/tpc.18.00127 ;  PMID:  30018156
• Interaction between VPS35 and RABG3f is necessary as a checkpoint to control fusion of late compartments with the vacuole.   DOI:  10.1073/pnas.1905321116 ;  PMID:  31570580
• Sorting Nexin1 negatively modulates phosphate uptake by facilitating Phosphate Transporter1;1 degradation in Arabidopsis.   DOI:  10.1111/tpj.15778 ;  PMID:  35436372
• Plant retromer, localized to the prevacuolar compartment and microvesicles in Arabidopsis, may interact with vacuolar sorting receptors.   DOI:  10.1105/tpc.105.035907 ;  PMID:  16582012

Sequences: