Information report for AT5G05940
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0033043 — acts upstream of or within — regulation of organelle organization
- GO:0007010 — acts upstream of or within — cytoskeleton organization
- GO:0051301 — acts upstream of or within — cell division
- GO:0005634 — located in — nucleus
- GO:0048364 — acts upstream of or within — root development
- GO:0044085 — acts upstream of or within — cellular component biogenesis
- GO:0005886 — is active in — plasma membrane
- GO:0005085 — enables — guanyl-nucleotide exchange factor activity
Functional Keywords
Literature and News
- A new family of RhoGEFs activates the Rop molecular switch in plants. DOI: 10.1038/nature03883 ; PMID: 15980860
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Systematic identification of functional plant modules through the integration of complementary data sources. DOI: 10.1104/pp.112.196725 ; PMID: 22589469
- Kinase partner protein interacts with the LePRK1 and LePRK2 receptor kinases and plays a role in polarized pollen tube growth. DOI: 10.1111/j.1365-313X.2005.02388.x ; PMID: 15860008
- Members of a novel class of Arabidopsis Rho guanine nucleotide exchange factors control Rho GTPase-dependent polar growth. DOI: 10.1105/tpc.105.036434 ; PMID: 16415208
Gene Resources
- UniProt: A0A1R7T3I0
- EMBL: CP002688
- AlphaFoldDB: A0A1R7T3I0
- EnsemblPlants: AT5G05940.2
- Gramene: AT5G05940.2
- Orthologous matrix: CVHSLGV
- ExpressionAtlas: AT5G05940
- InterPro: IPR005512, IPR038937
- PANTHER: PTHR33101, PTHR33101:SF1
- PROSITE: PS51334
- Gene3D: 1.20.58.1310, 1.20.58.2010
- SWISS-MODEL: A0A1R7T3I0
Sequences
cDNA Sequence
- >AT5G05940.2
ACTCGTGACTGAGGAAGAGAAACAGAGAGCATAACTTTATATCCAGCCGATTTTTTTTCAAATTTCTTACCTTTTGCTCTCACTAAAGCCATGTTCTTACCTTTATAGTGAGTGTTATCTAAACTCTTTTGGGTCTTTTGCAAAAGAAACCAGTTTTCAAAGTTCAAAATTTTGTTTTTAAAAATGGAGAATTTAGTGAAGAGCTGCGCAGGGATCGAGAAGAAAAGAAGCAATTTGACTCCATCGATGGAAGATATACTTACAGAGTCAAAGGAGAGAAGCAGCACTAGCGGAGCGAGCTACGAAAGCTCCTCCACCACCACCGTCGCTTCGTCTTCTCCACCACCACCACCGTCGCAGATTCTGGGTTGGCCGATTAGAAAAGCTTCATTTCGGAAAAATTCGAAGGAGAGTGTTAATTTTGATCATAAGAAATTAACCCTTCACGATGATTCTGGGTTTAAAGCGAAAGAGATGAATTCTGCAGATGTGGAGATGATGAAGGAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGCTACGATTTTCGGGCAACTATGGAGATTAGAGCCACTTTCAAGCGAAAAGAAGGAGATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTCGAGTTAACACCTTCAACACAAACTTATCCAGACGGCAACAAGTTTGAGGTCATGACTTGTCGACCAAGATTTGATCTTTTCATCAACCTCCCTGCTCTCCGTAAACTAGACAATATGCTTCTCGATATATTGGCGAGTTTCAAGAAAACTGAGTTCTGGTATGTTGATCAAGGGATCGTTGCTTCGGAAAACGATGGCTCAGCTTCTTTCCGCAGAAAGATTCAGCGCCAAGAGGAGAAATGGTGGTTGCCTGTTCCTCGTTTAGCACCGAATGGTCTTACTGAAGAAGCAAGAACAGAATTGAATCATAAGAGGGAATGTGCGACGCAGATACTTAAAGCTGCAATGGCTATTAACAGCCTTGCTTTAACCGAAATGGATGTTCCTAAATCATACCTTGAAACCCTTCCAAAGAACGGTAGGTCCTGCCTTGGGGATGTTATCTACAGGTATGTAACATCTGACAAATTTTCTGCGGAGTCTCTTCTCGATTGCCTTGATCTGTCCTCTGAGCATATTGCTCTTGATATCGCAAACCGTGTGGAAGCTTCGATATATGTTTGGAGGAGAAGAGTTCAAACAAAACTTGGAGTCAACAATAATACTTCAAGCACTACTCCAAAGTTAACATGGGAAATGGTCAAAGAACTAATGGCTGCTGGTGACAAAAGGGGATTGCTTGTGGAGAGATCGGAAACTCTCTTACGTTGCTTGAAGCAGCGGTTTCCTTCTCTAACGCAGACTTCTCTAGACATAAGCAAGATTCAATGGAACAAGGTCCAGACACACAAATCCTCTAAATACATTACAGTACAAAATGGCTTTGCTTGTTCTTATATATTCAGTCCTTTGAAAATTTCAGGATATTGGGAAATCAATCCTCGAAAGCTACTCAAGGGCTTTGGAGAGCTTAGCATCAAACATCATAGCACGAATCGATGATTTACTCTACGTGGACGACTTAACAAAGCAATCAGATGATAACAATCTTTTGTCAAGTCCAGCGGTCAGCAGCATTATAGCTCACAAGAAAGTAGTACCACTCCCTTATCTAATATCTGCATCAGGAACTCCATATAGAACAAGCTTCTCAACAACACCAGGCTTCTCTCCTTCAATGATTAGCCCCAAGAAAGGAGAGAGGAGAACACCTTACTCCAGCAAGGACACTAACAAAATCATTGAGAAAGGTCTTCCTTCTCGAGGATATGGAGTGAGAAGAGTCTTGAACAATTATCTTGGCATGGAATCAAAACTGAAAATATGCGTTAATCCGTCAGATAATGCAGATACAGCAGTGATTAACCAAATCAGCAAAGACGTGGAAGAAGAGAAGAAAAGAAACTCAACATCAGTCCATCAAAAGGGTCCTCCAAAGTACACTGTCTCTTAAAAGCTAATAGAAGAAACTCAATAGAGTGTATAATTAATGCAGACATGGATTGATTTGTTTGATATTTACTTGTAGTTTCTGTCTTATTTGGAATGGTAAAGTGTCTATCTTTGCAAACCAAATCAGATCACAAAATAGACAAAAATGAGAGTGGTTGTAACAAATATTCTCATCAAATTTGTTCTGGTTTGGTTTACTAGCTTTATTTATTTGGTAAACAATCACCAATAACGTGTA - >AT5G05940.1
ACTCGTGACTGAGGAAGAGAAACAGAGAGCATAACTTTATATCCAGCCGATTTTTTTTCAAATTTCTTACCTTTTGCTCTCACTAAAGCCATGTTCTTACCTTTATAGTGAGTGTTATCTAAACTCTTTTGGGTCTTTTGCAAAAGAAACCAGTTTTCAAAGTTCAAAATTTTGTTTTTAAAAATGGAGAATTTAGTGAAGAGCTGCGCAGGGATCGAGAAGAAAAGAAGCAATTTGACTCCATCGATGGAAGATATACTTACAGAGTCAAAGGAGAGAAGCAGCACTAGCGGAGCGAGCTACGAAAGCTCCTCCACCACCACCGTCGCTTCGTCTTCTCCACCACCACCACCGTCGCAGATTCTGGGTTGGCCGATTAGAAAAGCTTCATTTCGGAAAAATTCGAAGGAGAGTGTTAATTTTGATCATAAGAAATTAACCCTTCACGATGATTCTGGGTTTAAAGCGAAAGAGATGAATTCTGCAGATGTGGAGATGATGAAGGAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGCTACGATTTTCGGGCAACTATGGAGATTAGAGCCACTTTCAAGCGAAAAGAAGGAGATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTCGAGTTAACACCTTCAACACAAACTTATCCAGACGGCAACAAGTTTGAGGTCATGACTTGTCGACCAAGATTTGATCTTTTCATCAACCTCCCTGCTCTCCGTAAACTAGACAATATGCTTCTCGATATATTGGCGAGTTTCAAGAAAACTGAGTTCTGGTATGTTGATCAAGGGATCGTTGCTTCGGAAAACGATGGCTCAGCTTCTTTCCGCAGAAAGATTCAGCGCCAAGAGGAGAAATGGTGGTTGCCTGTTCCTCGTTTAGCACCGAATGGTCTTACTGAAGAAGCAAGAACAGAATTGAATCATAAGAGGGAATGTGCGACGCAGATACTTAAAGCTGCAATGGCTATTAACAGCCTTGCTTTAACCGAAATGGATGTTCCTAAATCATACCTTGAAACCCTTCCAAAGAACGGTAGGTCCTGCCTTGGGGATGTTATCTACAGGTATGTAACATCTGACAAATTTTCTGCGGAGTCTCTTCTCGATTGCCTTGATCTGTCCTCTGAGCATATTGCTCTTGATATCGCAAACCGTGTGGAAGCTTCGATATATGTTTGGAGGAGAAGAGTTCAAACAAAACTTGGAGTCAACAATAATACTTCAAGCACTACTCCAAAGTTAACATGGGAAATGGTCAAAGAACTAATGGCTGCTGGTGACAAAAGGGGATTGCTTGTGGAGAGATCGGAAACTCTCTTACGTTGCTTGAAGCAGCGGTTTCCTTCTCTAACGCAGACTTCTCTAGACATAAGCAAGATTCAATGGAACAAGGTCCAGACACACAAATCCTCTAAATACATTACAGTACAAAATGGCTTTGCTTGTTCTTATATATTCAGTCCTTTGAAAATTTCAGGATATTGGGAAATCAATCCTCGAAAGCTACTCAAGGGCTTTGGAGAGCTTAGCATCAAACATCATAGCACGAATCGATGATTTACTCTACGTGGACGACTTAACAAAGCAATCAGATGATAACAATCTTTTGTCAAGTCCAGCGGTCAGCAGCATTATAGCTCACAAGAAAGTAGTACCACTCCCTTATCTAATATCTGCATCAGGAACTCCATATAGAACAAGCTTCTCAACAACACCAGGCTTCTCTCCTTCAATGATTAGCCCCAAGAAAGGAGAGAGGAGAACACCTTACTCCAGCAAGGACACTAACAAAATCATTGAGAAAGGTCTTCCTTCTCGAGGATATGGAGTGAGAAGAGTCTTGAACAATTATCTTGGCATGGAATCAAAACTGAAAATATGCGTTAATCCGTCAGATAATGCAGATACAGCAGTGATTAACCAAATCAGCAAAGACGTGGAAGAAGAGAAGAAAAGAAACTCAACATCAGTCCATCAAAAGGGTCCTCCAAAGTACACTGTCTCTTAAAAGCTAATAGAAGAAACTCAATAGAGTGTATAATTAATGCAGACATGGATTGATTTGTTTGATATTTACTTGTAGTTTCTGTCTTATTTGGAATGGTAAAGTGTCTATCTTTGCAAACCAAATCAGATCACAAAATAGACAAAAATGAGAGTGGTTGTAACAAATATTCTCATCAAATTTGTTCTGGTTTGGTTTACTAGCTTTATTTATTTGGTAAACAATCACCAATAACGTGTA
CDS Sequence
Protein Sequence