Information report for AT5G05490
Gene Details
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Functional Descriptions
- PO:0000003 — whole plant — planta entera (Spanish, exact), 植物体全体 (Japanese, exact), clonal colony (related), colony (related), bush (narrow), frutex (narrow), frutices (narrow), gametophyte (narrow), herb (narrow), liana (narrow), prothalli (narrow), prothallium (narrow), prothallus (narrow), seedling (narrow), shrub (narrow), sporophyte (narrow), suffrutex (narrow), suffrutices (narrow), tree (narrow), vine (narrow), woody clump (narrow), genet (broad), ramet (broad)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
Functional Keywords
- whole plant , root , vascular leaf , flower
Literature and News
- The cohesin complex: sequence homologies, interaction networks and shared motifs. DOI: 10.1186/gb-2001-2-3-research0009 ; PMID: 11276426
- Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana. DOI: 10.1007/s00412-009-0220-x ; PMID: 19533160
- Turning meiosis into mitosis. DOI: 10.1371/journal.pbio.1000124 ; PMID: 19513101
- The STRUCTURAL MAINTENANCE OF CHROMOSOMES 5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage in Arabidopsis thaliana. DOI: 10.1105/tpc.108.060525 ; PMID: 19737979
- The cyclin-A CYCA1;2/TAM is required for the meiosis I to meiosis II transition and cooperates with OSD1 for the prophase to first meiotic division transition. DOI: 10.1371/journal.pgen.1000989 ; PMID: 20585549
- Meiosis-specific loading of the centromere-specific histone CENH3 in Arabidopsis thaliana. DOI: 10.1371/journal.pgen.1002121 ; PMID: 21695238
- Gene expression profiling of Arabidopsis meiocytes. DOI: 10.1111/j.1438-8677.2010.00435.x ; PMID: 21815983
- Turning rice meiosis into mitosis. DOI: 10.1038/cr.2016.117 ; PMID: 27767093
- PROTEIN PHOSHATASE 2A B'α and β Maintain Centromeric Sister Chromatid Cohesion during Meiosis in Arabidopsis. DOI: 10.1104/pp.18.00281 ; PMID: 30061120
- The HEM Lines: A New Library of Homozygous Arabidopsis thaliana EMS Mutants and its Potential to Detect Meiotic Phenotypes. DOI: 10.3389/fpls.2018.01339 ; PMID: 30283471
- Protein Phosphatase 2A B'α and B'β Protect Centromeric Cohesion during Meiosis I. DOI: 10.1104/pp.18.01320 ; PMID: 30705069
- Interacting Genomic Landscapes of REC8-Cohesin, Chromatin, and Meiotic Recombination in Arabidopsis. DOI: 10.1105/tpc.19.00866 ; PMID: 32024691
- ATM controls meiotic DNA double-strand break formation and recombination and affects synaptonemal complex organization in plants. DOI: 10.1093/plcell/koab045 ; PMID: 33659989
- Comparative transcriptomic analysis of thermally stressed Arabidopsis thaliana meiotic recombination mutants. DOI: 10.1186/s12864-021-07497-2 ; PMID: 33711924
- Heat stress interferes with formation of double-strand breaks and homolog synapsis. DOI: 10.1093/plphys/kiab012 ; PMID: 33793950
- The Role of Structural Maintenance of Chromosomes Complexes in Meiosis and Genome Maintenance: Translating Biomedical and Model Plant Research Into Crop Breeding Opportunities. DOI: 10.3389/fpls.2021.659558 ; PMID: 33868354
- Interfered chromosome pairing at high temperature promotes meiotic instability in autotetraploid Arabidopsis. DOI: 10.1093/plphys/kiab563 ; PMID: 34927688
- The meiotic cohesin subunit REC8 contributes to multigenic adaptive evolution of autopolyploid meiosis in Arabidopsis arenosa. DOI: 10.1371/journal.pgen.1010304 ; PMID: 35830475
- The cohesin complex: sequence homologies, interaction networks and shared motifs. DOI: 10.1186/gb-2001-2-3-research0009 ; PMID: 11276426
- The Arabidopsis SYN1 cohesin protein is required for sister chromatid arm cohesion and homologous chromosome pairing. DOI: 10.1242/jcs.00601 ; PMID: 12783989
- Characterization of Arabidopsis thaliana SMC1 and SMC3: evidence that AtSMC3 may function beyond chromosome cohesion. DOI: 10.1242/jcs.02443 ; PMID: 15972315
- ASK1, a SKP1 homolog, is required for nuclear reorganization, presynaptic homolog juxtaposition and the proper distribution of cohesin during meiosis in Arabidopsis. DOI: 10.1007/s11103-006-9006-1 ; PMID: 16897472
- The Arabidopsis cohesin protein SYN3 localizes to the nucleolus and is essential for gametogenesis. DOI: 10.1111/j.1365-313X.2007.03106.x ; PMID: 17488242
- The cohesin complex: sequence homologies, interaction networks and shared motifs. DOI: 10.1186/gb-2001-2-3-research0009 ; PMID: 11276426
- Characterization of Arabidopsis thaliana SMC1 and SMC3: evidence that AtSMC3 may function beyond chromosome cohesion. DOI: 10.1242/jcs.02443 ; PMID: 15972315
- ASK1, a SKP1 homolog, is required for nuclear reorganization, presynaptic homolog juxtaposition and the proper distribution of cohesin during meiosis in Arabidopsis. DOI: 10.1007/s11103-006-9006-1 ; PMID: 16897472
- The Arabidopsis cohesin protein SYN3 localizes to the nucleolus and is essential for gametogenesis. DOI: 10.1111/j.1365-313X.2007.03106.x ; PMID: 17488242
- Identification of genes expressed in the Arabidopsis female gametophyte. DOI: 10.1111/j.1365-313X.2007.03137.x ; PMID: 17559508
Gene Resources
- UniProt: A0A654FZ23
- EMBL: CACRSJ010000110, CACSHJ010000096
- AlphaFoldDB: A0A654FZ23
- EnsemblPlants: AT5G05490.2
- Gramene: AT5G05490.2
- ExpressionAtlas: AT5G05490
- InterPro: IPR006909, IPR006910, IPR023093
- PANTHER: PTHR12585, PTHR12585:SF64
- SUPFAM: SSF46785
- Gene3D: 1.10.10.580
- OrthoDB: A0A654FZ23
- Conserved Domain Database: cd21793
Sequences
cDNA Sequence
- >AT5G05490.2
GGCTTCATAAATCTATATACAGACAAATTTACACATAAAGAAACGCATTAAAAAAACTATTTACTCAGATTCAGCTTCTTCTCCACGCAAAGACTCGCTTCTCTTTTTTTCTCTTCCTGAGTTTGGATTTTTTTTGCTTGAGCTGAATCATGTTTTATTCTCACCAGCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACATTGCACGCGAAGATCAACCGGAAGAAACTAGATAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAATCCGTCGGTTCCGATGGCTCTTAGACTCTCCGGGATTCTTATGGGTGGTGTTGTGATTGTTTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCTTTCTGGTTGAAATTAATGGAGCTTGGCGCACAAAATCTGTTCCGGATCCCACTTTACTACCTAAAGGAAAAACCCATGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGAACAGACTCGTAATGTTCCTAAATTTGGCAATTACATGGATTTTCAGCAGACTTTTATTTCCATGCGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCAGTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGACCAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACACAGATGAACTCCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACCTCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCGCCAGGAGCAACAGGAGAATCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGAGGAACACGATAGACCACAACCAGCGAAAAAGAGAGCAAGAAAGACAGCTACTTCAGCGATGGATTATGAGCAAACTATTATCGCTGGTCATGTTTACCAGTCATGGCTCCAGGATACTTCTGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGACATGGAAAGTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAGGACAGTTCTTACCCGCCTCAGCTTTACCAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATCATCTGAATCTCGACATCCTGATCTCCGTGCGGAACAATCTCCAGGGTTTGTTCAGGAGAGAATGCATAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCTTGATAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAGCATGATGGCTGGATCTCGAGCAAGCCCTGAAACTATTAACCGCCAGGCTGCTGATATTAATGTCACGCCATTCTATTCTGGAGATGATGTGAGATCCATGCCTAGTACACCATCCGCACGTGGAGCAGCTTCAATTAACAACATAGAGATCAGCTCTAAAAGTCGCATGCCCAATAGAAAAAGACCAAATTCCTCACCAAGAAGAGGACTCGAACCAGTGGCGGAAGAGAGACCGTGGGAGCACCGTGAATATGAGTTTGAGTTTTCAATGTTACCTGAAAAACGCTTCACAGCCGATAAAGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGACGAGATGATAACAGATAGCATCAAAAGTCACCTGAAGACACACTTTGAAACACCTGGAGCTCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAAACTCTTCTTCCAATCCTGTGTGTTAGCTACTCGCGGAGTCATCAAGGTAAACCAAGCAGAGCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAAGGTTTGATTTCTAAATTATAAAAGATTCTGGTGAACCGATTATCCATAGTTGTTTTGCTTTTCATATTCTAGCAGAGAGAGTTCGTAGACTTTTTTAAGTTATAAAGAGCAAGCGTTCTTTACCC - >AT5G05490.1
GGCTTCATAAATCTATATACAGACAAATTTACACATAAAGAAACGCATTAAAAAAACTATTTACTCAGATTCAGCTTCTTCTCCACGCAAAGACTCGCTTCTCTTTTTTTCTCTTCCTGAGTTTGGATTTTTTTTGCTTGAGCTGAATCATGTTTTATTCTCACCAGCTTCTAGCTCGAAAAGCTCCGTTGGGTCAGATATGGATGGCCGCTACATTGCACGCGAAGATCAACCGGAAGAAACTAGATAAGCTCGATATCATTCAAATCTGCGAAGAGATTTTGAATCCGTCGGTTCCGATGGCTCTTAGACTCTCCGGGATTCTTATGGGTGGTGTTGTGATTGTTTATGAGAGGAAAGTGAAGCTCCTATTCGATGATGTTAATCGCTTTCTGGTTGAAATTAATGGAGCTTGGCGCACAAAATCTGTTCCGGATCCCACTTTACTACCTAAAGGAAAAACCCATGCCAGGAAAGAGGCTGTTACATTGCCTGAGAACGAAGAAGCTGATTTTGGAGATTTTGAACAGACTCGTAATGTTCCTAAATTTGGCAATTACATGGATTTTCAGCAGACTTTTATTTCCATGCGGTTAGATGAATCCCATGTTAACAATAACCCCGAGCCAGAAGATCTTGGACAGCAGTTCCATCAAGCTGATGCCGAGAATATCACACTCTTTGAGTATCATGGTTCATTCCAGACCAACAATGAAACATATGATCGTTTTGAAAGATTTGACATCGAAGGAGATGATGAAACACAGATGAACTCCAATCCAAGAGAAGGCGCTGAAATACCTACAACTCTCATCCCATCACCACCTCGTCATCATGACATTCCCGAAGGAGTCAACCCCACAAGCCCTCAGCGCCAGGAGCAACAGGAGAATCGTAGGGACGGATTTGCTGAGCAGATGGAGGAACAAAACATACCGGACAAAGAGGAACACGATAGACCACAACCAGCGAAAAAGAGAGCAAGAAAGACAGCTACTTCAGCGATGGATTATGAGCAAACTATTATCGCTGGTCATGTTTACCAGTCATGGCTCCAGGATACTTCTGACATTCTCTGTAGGGGGGAAAAGAGAAAGGTTCGAGGAACTATCCGGCCAGACATGGAAAGTTTCAAACGTGCGAATATGCCACCTACACAACTCTTTGAAAAGGACAGTTCTTACCCGCCTCAGCTTTACCAGCTTTGGTCAAAGAATACTCAAGTTCTTCAAACCTCATCATCTGAATCTCGACATCCTGATCTCCGTGCGGAACAATCTCCAGGGTTTGTTCAGGAGAGAATGCATAACCACCATCAAACAGACCATCATGAGCGCAGTGACACAAGCTCCCAAAATCTTGATAGTCCCGCAGAAATACTCCGGACAGTTCGTACTGGGAAAGGTGCTTCAGTAGAAAGCATGATGGCTGGATCTCGAGCAAGCCCTGAAACTATTAACCGCCAGGCTGCTGATATTAATGTCACGCCATTCTATTCTGGAGATGATGTGAGATCCATGCCTAGTACACCATCCGCACGTGGAGCAGCTTCAATTAACAACATAGAGATCAGCTCTAAAAGTCGCATGCCCAATAGAAAAAGACCAAATTCCTCACCAAGAAGAGGACTCGAACCAGTGGCGGAAGAGAGACCGTGGGAGCACCGTGAATATGAGTTTGAGTTTTCAATGTTACCTGAAAAACGCTTCACAGCCGATAAAGAAATACTATTTGAAACTGCATCTACACAGACTCAAAAGCCAGTGTGCAATCAATCAGACGAGATGATAACAGATAGCATCAAAAGTCACCTGAAGACACACTTTGAAACACCTGGAGCTCCTCAAGTGGAATCTCTTAACAAGCTCGCTGTTGGAATGGACAGAAACGCTGCAGCTAAACTCTTCTTCCAATCCTGTGTGTTAGCTACTCGCGGAGTCATCAAGGTAAACCAAGCAGAGCCTTATGGGGACATTCTCATTGCAAGAGGACCCAACATGTAAGGTTTGATTTCTAAATTATAAAAGATTCTGGTGAACCGATTATCCATAGTTGTTTTGCTTTTCATATTCTAGCAGAGAGAGTTCGTAGACTTTTTTAAGTTATAAAGAGCAAGCGTTCTTTACCC
CDS Sequence
Protein Sequence