Information report for AT5G05390
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
- root , fruit , root , vascular leaf , flower , plant sperm cell
Literature and News
- Gene structure and molecular analysis of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana. DOI: 10.1007/s00425-004-1472-6 ; PMID: 15940465
- CINNAMYL ALCOHOL DEHYDROGENASE-C and -D are the primary genes involved in lignin biosynthesis in the floral stem of Arabidopsis. DOI: 10.1105/tpc.105.030767 ; PMID: 15937231
- TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat. DOI: 10.1105/tpc.105.035154 ; PMID: 16243908
- Mutant identification and characterization of the laccase gene family in Arabidopsis. DOI: 10.1093/jxb/erl022 ; PMID: 16804053
- Global comparative transcriptome analysis identifies gene network regulating secondary xylem development in Arabidopsis thaliana. DOI: 10.1007/s00438-006-0157-1 ; PMID: 16969662
- Salt stress responses in Arabidopsis utilize a signal transduction pathway related to endoplasmic reticulum stress signaling. DOI: 10.1111/j.1365-313X.2007.03195.x ; PMID: 17662035
- MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis. DOI: 10.1074/jbc.M801406200 ; PMID: 18408011
- GeneCAT–novel webtools that combine BLAST and co-expression analyses. DOI: 10.1093/nar/gkn292 ; PMID: 18480120
- Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. DOI: 10.1007/s11103-010-9711-7 ; PMID: 21069430
- The laccase multigene family in Arabidopsis thaliana: towards addressing the mystery of their gene function(s). DOI: 10.1007/s00425-010-1298-3 ; PMID: 21063888
- Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems. DOI: 10.1105/tpc.110.082792 ; PMID: 21447792
- The Altered Expression of microRNA408 Influences the Arabidopsis Response to Iron Deficiency. DOI: 10.3389/fpls.2019.00324 ; PMID: 31001291
- Different combinations of laccase paralogs nonredundantly control the amount and composition of lignin in specific cell types and cell wall layers in Arabidopsis. DOI: 10.1093/plcell/koac344 ; PMID: 36449969
- a in poplar. DOI: 10.1046/j.1432-1327.1999.00061.x ; PMID: 9914531
Gene Resources
- UniProt: A0A7G2F8J6
- EMBL: LR881470
- AlphaFoldDB: A0A7G2F8J6
- EnsemblPlants: AT5G05390.1
- Gramene: AT5G05390.1
- KEGG: ath:AT5G05390
- Orthologous matrix: GFWLYHC
- ExpressionAtlas: AT5G05390
- InterPro: IPR001117, IPR002355, IPR008972
- PANTHER: PTHR11709, PTHR11709:SF479
- SUPFAM: SSF49503
- PROSITE: PS00079, PS00080
- Gene3D: 2.60.40.420
- SWISS-MODEL: A0A7G2F8J6
- Conserved Domain Database: cd13849, cd13875, cd13897
Sequences
cDNA Sequence
- >AT5G05390.1
CATATATCTCTTAATCTCATAAACGTTAATCTCAAATTTTTCGTAATCTCAAAGCTTAAACACACTTAATGACGACTGTTCACACATTCTCTATATTATTGTTCTTTTGTTCCCTTTTCTCGGCTTCATTGATTATCGCCAAAGTCCAACACCATGATTTTGTCATACAAGAGACGCCGGTGAAGAGGCTGTGCAAGACCCGTAACGCCATCACCGTCAACGGAATGTTTCCGGGGCCTACGCTCGAAGTCAACAACGGCGACACTCTTGAAGTCAAAGTGCATAACCGTGCTCGTTACAATATCACCATCCATTGGCATGGAGTGAGGCAGATAAGAACCGGATGGGCTGATGGCCCAGAATTCGTGACCCAATGCCCGATCCGACCCGGAAAGAGCTACACGTACCGTTTCACTATCCAAGGCCAAGAAGGGACATTGTGGTGGCACGCTCACAGCTCTTGGCTCCGAGCCACTGTCTACGGCGCACTCATCATTCACCCAACCCCTGGTTCCTCTTTTCCTTTCCCTAAACCGGACCGCCAAACCGCCCTCATGCTCGGGGAATGGTGGAATGCAAATCCGGTTGATGTAATTAACCAAGCGACTCGAACCGGAGCTGCTCCTAATATATCCGACGCTTATACCATCAATGGTCAACCGGGTGATCTCTATAATTGCTCGACCAAAGAGACTGTTGTAGTACCGATAAATTCAGGGGAAACAAGTCTCCTACGAGTGATCAACGCAGCTTTAAACCAACCGCTATTTTTCACTGTGGCTAACCACAAGCTCACTGTAGTTGGAGCCGACGCATCTTACCTCAAACCATTCACCACAAAGGTCCTTATGTTAGGTCCAGGCCAAACTACTGACGTACTTCTAACCGCAGACCAACCCCCAAAACGCTATTACATAGCAGCAAGAGCTTACCAAAGCGCTCAAAACGCACCGTTTGATAACACCACAACTACAGCCATTCTCCAATACAAGAAGACGACGACCACTTCTAAACCAATCATGCCGGTTTTGCCTGCCTTCAACGACACGAACACCGTGACGTCTTTCTCAAGGAAGTTCAAATCTCTCCGTAACGTCGTCGTACCGAAAACAATCGATGATAATTTGTTCTTCACCATTGGTTTAGGTCTTGATAATTGTCCCAAAAAATTCCCTAAAAGCCGGTGCCAAGGCTTGAACGGAACCCGGTTTACCGCATCGATGAACAACGTTTCGTTTGTTCTACCGTCGAATTTCTCGCTCTTACAAGCACATTCCAACGGAATTCCCGGCGTTTTCACAACGGATTTTCCGTCTAAACCGCCGGTTAAATTCGATTATACCGGAAATAACATAAGCAGGGCTCTGTTTCAGCCGGTTAAGGGTACTAAACTGTATAAACTAAAGTATGGATCTCGAGTTCAAGTTGTTTTACAGGATACAAACATTGTTACATCGGAGAATCACCCGATTCATCTTCACGGTTACGATTTCTACATTGTTGGTGAAGGGTTCGGTAACTTTAATCCCAAGAAAGATACTTCTAAGTTTAATCTTGTTGATCCTCCGCTTAGAAACACTGTGGCTGTTCCTGTTAATGGATGGGCTGTTATCAGATTCGTGGCAGATAATCCAGGGGTTTGGTTGATGCATTGTCACTTAGATGTTCATATAAAGTGGGGTCTTGCTATGGCGTTCTTGGTCGACAATGGTGTCGGAGAATTGGAGACTCTTGAAGCTCCTCCTCACGATCTACCTATTTGCTAG
CDS Sequence
Protein Sequence