Information report for AT5G05080
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- Ubiquitylation in plants: a post-genomic look at a post-translational modification. DOI: 10.1016/s1360-1385(01)02080-5 ; PMID: 11590065
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis. DOI: 10.1186/1471-2229-9-39 ; PMID: 19348673
- Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes. DOI: 10.1186/s12870-015-0660-9 ; PMID: 26556605
Gene Resources
- UniProt: A0A178UL56
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UL56
- EnsemblPlants: AT5G05080.1, AT5G05080.2, AT5G05080.3
- Gramene: AT5G05080.1, AT5G05080.2, AT5G05080.3
- KEGG: ath:AT5G05080
- Orthologous matrix: NVGQTHT
- ExpressionAtlas: AT5G05080
- InterPro: IPR000608, IPR016135, IPR023313
- PANTHER: PTHR24067
- SUPFAM: SSF54495
- PROSITE: PS00183, PS50127
- Gene3D: 3.10.110.10
- OrthoDB: A0A178UL56
- SWISS-MODEL: A0A178UL56
- Conserved Domain Database: cd23804
Sequences
cDNA Sequence
- >AT5G05080.4
AAAATAAACATTTGTCTCTATTTCTCTTATAAAAATTCAATAATTGAACCTCCTCTCTCTCTCTCTCTTCTCTCCCTTCTTCTTCTCCGATTTCGACTTTGAATCATTTCTTCGAGAGAGGTAGCGAGAAAGGGATCGCCTTTTCTCACTCTCTGCGGATTCTCAATTTTGGGCAAGAAGGCAAGAACGTATGTTGAGATTTCTGATGAAAAATCCATTCTTTTATTCTTTCTTGAAATGATCGACTTGGGATGTGATTCGTTGCTTTCTCTCACATTTCGTCGATTTTTGTATTTAGCTTAGCCTCAATTTGGTCTTATGAGTTGTTCTTGGAAACCCTAGAGTCTCTGTCTCCGTCAATTGCGAGTTTTTATCGCAATTGAGTCTTGAAGACCACAAGGATTTGATCACATTGGTGCTTCTGCCTGTTTATCTGAGTTTGAGGACAAGAACTTCTGGGGCGTTTATAATTTGCCATGGCTAGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTTGACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATATGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAGTTGGCCTTGTCACATGATTTTCCACATTCGCCTCCCAAAGGCTACTTCATGACAAAGATTTTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAAGATTGGAACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCATTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAGTATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAGACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACGCCTGGTGCTGCTACTGCAATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGTGCCCAAGACCAACAACACGTAGCTAATGTCGTTGTAGCAGCCTCTGCAAGTGTGGTCACTACGACGCAAAAAAGGGAAGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAGAAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCAGTGTCTTACGCTCTTTGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGAGGATTTTTCATTTCTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTTGGTGTTCTAATCTACACATGGTTTTGCTGAGTAATCGTGGATAAGACAAAAGACACATCGACCTCTGGAATAGTCGTCTGTATCTTGCCACA - >AT5G05080.1
AAAATAAACATTTGTCTCTATTTCTCTTATAAAAATTCAATAATTGAACCTCCTCTCTCTCTCTCTCTTCTCTCCCTTCTTCTTCTCCGATTTCGACTTTGAATCATTTCTTCGAGAGAGGTAGCGAGAAAGGGATCGCCTTTTCTCACTCTCTGCGGATTCTCAATTTTGGGCAAGAAGGCAAGAACGTATGTTGAGATTTCTGATGAAAAATCCATTCTTTTATTCTTTCTTGAAATGATCGACTTGGGATGTGATTCGTTGCTTTCTCTCACATTTCGTCGATTTTTGTATTTAGCTTAGCCTCAATTTGGTCTTATGAGTTGTTCTTGGAAACCCTAGAGTCTCTGTCTCCGTCAATTGCGAGTTTTTATCGCAATTGAGTCTTGAAGACCACAAGGATTTGATCACATTGGTGCTTCTGCCTGTTTATCTGAGTTTGAGGACAAGAACTTCTGGGGCGTTTATAATTTGCCATGGCTAGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTTGACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATATGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAGTTGGCCTTGTCACATGATTTTCCACATTCGCCTCCCAAAGGCTACTTCATGACAAAGATTTTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAAGATTGGAACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCATTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAGTATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAGACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACGCCTGGTGCTGCTACTGCAATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGTGCCCAAGACCAACAACACGTAGCTAATGTCGTTGTAGCAGCCTCTGCAAGTGTGGTCACTACGACGCAAAAAAGGGAAGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAGAAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCAGTGTCTTACGCTCTTTGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGAGGATTTTTCATTTCTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTTGGTGTTCTAATCTACACATGGTTTTGCTGAGTAATCGTGGATAAGACAAAAGACACATCGACCTCTGGAATAGTCGTCTGTATCTTGCCACA - >AT5G05080.3
AAAATAAACATTTGTCTCTATTTCTCTTATAAAAATTCAATAATTGAACCTCCTCTCTCTCTCTCTCTTCTCTCCCTTCTTCTTCTCCGATTTCGACTTTGAATCATTTCTTCGAGAGAGGTAGCGAGAAAGGGATCGCCTTTTCTCACTCTCTGCGGATTCTCAATTTTGGGCAAGAAGGCAAGAACGTATGTTGAGATTTCTGATGAAAAATCCATTCTTTTATTCTTTCTTGAAATGATCGACTTGGGATGTGATTCGTTGCTTTCTCTCACATTTCGTCGATTTTTGTATTTAGCTTAGCCTCAATTTGGTCTTATGAGTTGTTCTTGGAAACCCTAGAGTCTCTGTCTCCGTCAATTGCGAGTTTTTATCGCAATTGAGTCTTGAAGACCACAAGGATTTGATCACATTGGTGCTTCTGCCTGTTTATCTGAGTTTGAGGACAAGAACTTCTGGGGCGTTTATAATTTGCCATGGCTAGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTTGACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATATGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAGTTGGCCTTGTCACATGATTTTCCACATTCGCCTCCCAAAGGCTACTTCATGACAAAGATTTTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAAGATTGGAACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCATTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAGTATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAGACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACGCCTGGTGCTGCTACTGCAATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGTGCCCAAGACCAACAACACGTAGCTAATGTCGTTGTAGCAGCCTCTGCAAGTGTGGTCACTACGACGCAAAAAAGGGAAGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAGAAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCAGTGTCTTACGCTCTTTGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGAGGATTTTTCATTTCTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTTGGTGTTCTAATCTACACATGGTTTTGCTGAGTAATCGTGGATAAGACAAAAGACACATCGACCTCTGGAATAGTCGTCTGTATCTTGCCACA - >AT5G05080.2
AAAATAAACATTTGTCTCTATTTCTCTTATAAAAATTCAATAATTGAACCTCCTCTCTCTCTCTCTCTTCTCTCCCTTCTTCTTCTCCGATTTCGACTTTGAATCATTTCTTCGAGAGAGGTAGCGAGAAAGGGATCGCCTTTTCTCACTCTCTGCGGATTCTCAATTTTGGGCAAGAAGGCAAGAACGTATGTTGAGATTTCTGATGAAAAATCCATTCTTTTATTCTTTCTTGAAATGATCGACTTGGGATGTGATTCGTTGCTTTCTCTCACATTTCGTCGATTTTTGTATTTAGCTTAGCCTCAATTTGGTCTTATGAGTTGTTCTTGGAAACCCTAGAGTCTCTGTCTCCGTCAATTGCGAGTTTTTATCGCAATTGAGTCTTGAAGACCACAAGGATTTGATCACATTGGTGCTTCTGCCTGTTTATCTGAGTTTGAGGACAAGAACTTCTGGGGCGTTTATAATTTGCCATGGCTAGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTTGACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATATGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAGTTGGCCTTGTCACATGATTTTCCACATTCGCCTCCCAAAGGCTACTTCATGACAAAGATTTTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAAGATTGGAACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCATTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAGTATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAGACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACGCCTGGTGCTGCTACTGCAATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGTGCCCAAGACCAACAACACGTAGCTAATGTCGTTGTAGCAGCCTCTGCAAGTGTGGTCACTACGACGCAAAAAAGGGAAGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAGAAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCAGTGTCTTACGCTCTTTGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGAGGATTTTTCATTTCTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTTGGTGTTCTAATCTACACATGGTTTTGCTGAGTAATCGTGGATAAGACAAAAGACACATCGACCTCTGGAATAGTCGTCTGTATCTTGCCACA
CDS Sequence
Protein Sequence