Information report for AT5G04960
Gene Details
|
|
Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0000256 — root hair cell — célula del pelo de la raíz (Spanish, exact), 根毛細胞 (Japanese, exact)
- PO:0000262 — trichoblast — tricoblasto (Spanish, exact), 根毛形成細胞、トリコブラスト (Japanese, exact), hair cell (related)
Functional Keywords
- root , flower , root hair cell , trichoblast
Literature and News
- Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome. DOI: 10.1111/j.1365-313X.2004.02295.x ; PMID: 15634198
- Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. DOI: 10.1007/s00425-006-0261-9 ; PMID: 16622707
- Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression. DOI: 10.1186/gb-2007-8-4-r49 ; PMID: 17408486
- A putative hydroxysteroid dehydrogenase involved in regulating plant growth and development. DOI: 10.1104/pp.107.100560 ; PMID: 17616511
- Cooperative ethylene and jasmonic acid signaling regulates selenite resistance in Arabidopsis. DOI: 10.1104/pp.107.110742 ; PMID: 18178671
- Arabidopsis AAL-toxin-resistant mutant atr1 shows enhanced tolerance to programmed cell death induced by reactive oxygen species. DOI: 10.1016/j.bbrc.2008.08.056 ; PMID: 18725200
- Arabidopsis sterol carrier protein-2 is required for normal development of seeds and seedlings. DOI: 10.1093/jxb/ern201 ; PMID: 18687588
- A gene regulatory network for root epidermis cell differentiation in Arabidopsis. DOI: 10.1371/journal.pgen.1002446 ; PMID: 22253603
- LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. DOI: 10.1111/tpj.13506 ; PMID: 28181322
- The Plant Invertase/Pectin Methylesterase Inhibitor Superfamily. DOI: 10.3389/fpls.2022.863892 ; PMID: 35401607
- Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana. DOI: 10.1007/s00425-006-0261-9 ; PMID: 16622707
Gene Resources
- UniProt: A0A178UR22
- EMBL: CACRSJ010000110, CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A178UR22
- EnsemblPlants: AT5G04960.1
- Gramene: AT5G04960.1
- KEGG: ath:AT5G04960
- Orthologous matrix: YSEFQNF
- ExpressionAtlas: AT5G04960
- InterPro: IPR000070, IPR006501, IPR011050
- PANTHER: PTHR31707
- SUPFAM: SSF101148, SSF51126
- PROSITE: PS00503
- Gene3D: 1.20.140.40, 2.160.20.10
- OrthoDB: A0A178UR22
- SWISS-MODEL: A0A178UR22
- Conserved Domain Database: cd15798
Sequences
cDNA Sequence
- >AT5G04960.1
TCATCTTAGTGCCTCCCACGCAAAATATATATTTGTGCCGCGTAAAATCAAGTTTAATCATTCACTTTAATTAAAAATACAAATCGTCGACTCTTATATATCCTCTCTACAAGAGTAAACAGATAACATCAAAAACATTTGATCACACAAAACTTCAATATCTCACAAACGAGAGGCCGGTTAGGAGGAAATTACAAAAATGTCCTCCTACGGCAGACTCGACGAGCATGAGCAAGCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATTGCCATCATCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCGTCGTTGGAACCACAGCTCGCGATAACAGCAAGAAACCACCGACGGAGAATAACGGAGAGCCAATATCAGTCTCCGTGAAAGCCCTGTGCGACGTGACATTGCACAAAGAAAAATGTTTCGAGACCCTTGGATCGGCTCCAAACGCGAGCCGATCAAGCCCAGAGGAGCTTTTCAAGTACGCCGTCAAAGTCACCATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCCACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATCGGGCTAGCCGTTGATCAACTCAACGAAACAATGACGTCGTCCTTGAAGAACTTTGACGATCTAAGGACGTGGCTTAGCTCCGTGGGAACGTACCAAGAAACGTGTATGGATGCGTTAGTGGAAGCGAACAAACCAAGTTTAACGACTTTCGGAGAAAACCATTTGAAAAACTCGACGGAGATGACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATCGCTGACACCGTTAAGTTTAGACGACGTCGTTTGTTGGAGACTGGTAACGCCAAAGTCGTTGTAGCTGACTTGCCGATGATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTTGAAGAAGAAAGCGACTATCGTGGTGGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGTGAGGCTTTAGCGGAAGTGGAGGAGAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTAGAGAATGTTAGGGTTGAGAAGACGAAATGGAATGTTGTGATGGTTGGAGATGGACAAAGTAAGACTATCGTCTCTGCTGGACTCAACTTCATCGATGGAACCCCCACTTTCGAAACCGCCACATTTGCTGTGTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACACAGCTGGTCCAGCTAAGCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTATCTGTGTTCTACAAGTGCACCATGGACGCTTTCCAAGATACAATGTACGCTCATGCACAACGTCAGTTTTACCGTGATTGTGTTATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAAGTGCGAGATCTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAAAGATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTACTATCAAGCCTTTGGATAACTTAACCGATATCCAAACATTCCTAGGCCGGCCTTGGAAGGATTTCTCTACAACGGTTATCATGAAGTCGTTCATGGACAAATTCATCAACCCGAAAGGGTGGTTACCGTGGACAGGAGATACCGCGCCAGACACGATCTTTTACGCCGAGTACTTAAATTCCGGGCCAGGAGCATCGACCAAGAACCGGGTTAAGTGGCAAGGGTTGAAGACGTCTTTAACAAAGAAGGAAGCAAATAAGTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCTACCAAAGTTCCCTTCAACTCTGATTTTTGATATTTTTTGCTGGAAAAGGCTGGTCTGAAAACTGATGCATGGCTAGTCGTTCTTTAATTTGTTTATAACGAACATACAACATTCCCTTCTAAAACATTTTCTTGTATTGGCTTTATTTCAAAGTGTCTGAATTTGTTTCTATATATTCATATAATTTCGGAGGTGTTTCTTCTTAACGCAAATCATATAATATGTATGCGTCAACTTATACAATCAAGTTCCTATTTATGATCATGATATCAAAATAGGTTTTTTTT
CDS Sequence
Protein Sequence