Information report for AT5G04920
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0009507 — located in — chloroplast
- GO:0005515 — enables — protein binding
- GO:0000814 — part of — ESCRT II complex
- GO:0016192 — acts upstream of or within — vesicle-mediated transport
- GO:0071985 — acts upstream of or within — multivesicular body sorting pathway
Functional Keywords
Literature and News
- Exploring the ESCRTing machinery in eukaryotes. DOI: 10.1016/j.tplants.2006.01.008 ; PMID: 16488176
- The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. DOI: 10.1242/dev.02654 ; PMID: 17090720
- Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. DOI: 10.1186/1471-2164-9-113 ; PMID: 18315867
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins. DOI: 10.1371/journal.pone.0073291 ; PMID: 24023856
- A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth. DOI: 10.1016/j.cub.2014.09.014 ; PMID: 25438943
- VPS36-Dependent Multivesicular Bodies Are Critical for Plasmamembrane Protein Turnover and Vacuolar Biogenesis. DOI: 10.1104/pp.16.01356 ; PMID: 27879389
- VPS36-Mediated plasma membrane protein turnover is critical for Arabidopsis root gravitropism. DOI: 10.1080/15592324.2017.1307495 ; PMID: 28340324
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Exploring the ESCRTing machinery in eukaryotes. DOI: 10.1016/j.tplants.2006.01.008 ; PMID: 16488176
- The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. DOI: 10.1242/dev.02654 ; PMID: 17090720
Gene Resources
- UniProt: A0A178U8Z1
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178U8Z1
- EnsemblPlants: AT5G04920.1
- Gramene: AT5G04920.1
- KEGG: ath:AT5G04920
- Orthologous matrix: TLNARVW
- ExpressionAtlas: AT5G04920
- InterPro: IPR011993, IPR021648, IPR036388
- PANTHER: PTHR13128, PTHR13128:SF12
- SUPFAM: SSF46785, SSF50729
- PROSITE: PS51495
- Gene3D: 1.10.10.10, 2.30.29.30, 6.10.140.260
- OrthoDB: A0A178U8Z1
- SWISS-MODEL: A0A178U8Z1
Sequences
cDNA Sequence
- >AT5G04920.1
ATAAAATCCATGGGATTGGATTTAGTAAAACGACACGTCTACAAGTTTTAGGGATTTCGTATTTTGCTTTCATTTCTTCTTCTTCTTCTTCATACGAGAGCCGAAAACGAATAAGAAGATTAATTGAGGAGAAATCGAAGATGTCTATAGCGTTAGTGGAGAAGATTCAAGCCAAATTTTGAAGAAGTCTAGTAGATTCTGTATTGTAAGCTACTAAAATCTGCGATGGTGAGGCATTTCAATCGTCGCCGGAAAATTCATCGGAGATATTAAAATTGAATCAAGCTTCGAATTGGTCAACCGATCTATTAATTTGACTAGAGAGGAACGAGCTGTATGATATATCTGCTTCCGAATTGAGTCTCCATGGCTAGTGGAAGCAGCAGCATCGCAATCGGTGGTTTGTTTGAGAACGCGGAGGTGACTACGAGTGGTAGACCAGTGCTTCGTCGCAATGAGGTCGAATGTTTCCTCCTCTCCTCCATCGATATAGATTCCGAAGATGATCCGCCGCGATTCACAGCTTTGAGGTCTGGAAATCTAATCCTTACCACTCATCGTCTCATATGGATTCCTTCTCAATCAAACGAATCTGTTCCTTCTTCGATTCCGCTCTCCGCCGTTACTCACATCTATTCCCATAAGAAATCAATCAAGTCTATGTTCCATTCGCCTAGAATCCGATTTCAAGCGGATCCCGGTTCGATTGTTGTAACGATTGTGTTTAGAGGGAAAGGGGATTTTGATGGCTTTTTGTCGAAATTGTGGGAATGTTGGAGAGGTAGGGCATGGGAAGAAGAGGAGAAGAGCGAGAGTGAGACTTCAAAGTCAGGATCTGGAACAGTTGCGCAAGGTTTGTATGGAAACGATGGAACGGTGAGGATGGTGGGATTGGCTGGGATTTTGAGGAAGGAGCAAGAACAGTGGGAGAGCACAGATAAGAGCTTGCAAGATGCTTTTCAGGATTTGAATGCTCTTATGAGTAAGGCTAAAGAGATGGTGAGTCTGGCAGAGAAAATGCGGCAGAAGCTTTTGTCTGCTCCTAGTAGTCAGAACGGTTCAACTGATGATGAAGAAATGGGGTCCAAAGAAGAAATGCAACAGTGGATGTTGAGCGTTGGTATTATCTCACCAGTTACAAAGGAATCTGCTGGTGCATTGTACCACCAAGAATTGTCCCGCCAGTTGGCAGATTTTGTCAGAATCCCATTAGAAAAAGCTGGGGGAATGATCAGCCTTACTGATATGTATTACCACTTCAACCGAGCTCGTGGGACAGAGTTGATTTCCCCAGACGATTTGTGGCAAGCTTGTACCCTCTGGGAGAAATTTGATGTTCCAGTAATGCTGCGGAAGTTTGATAGCGGTGTGATGGTCATCCAAAACAAGTCTCACAGCGACGAAGAGGTTATGAGTAGAATCAGAATGCTTGTGACAAAAACTGAAACTCTTAGAGTTGGAGTTACTGCTAGTGATGCAGCTTTGACGCTAAAGATTGCTCCTGCCATGGCTAAGGAACATCTACTATCTGCAGAGACCAAAGGTTTGCTATGTAGAGACATGAGCCCAGATGGGCTTCGATTCTATTTCAACCTGTTTCCCGAGATTGATCCAACCAATCTCCATATAGTCAAGGAGTTTGGGACATACGGTGAATGGATCAAAGCGACCAGTTTGTTGTCTGTATGACAAAGCTTTTGCTGTAAACTATTTGTAATAAGACATACAAAATATACAAACACAAATTTGGATTTTGAATCAAAATTGCCAATAATTTATTCAATTATTGTGGGCAAAGGTGTGTATAATTGTTTTTGTAATTGTTCAGCTGTGTTTGAAATTGCATGCGACAAACAAGTCTTGAAAGAAACGAGAAATCTTGTTTCAATGCAGTTTATGGAT
CDS Sequence
Protein Sequence