Information report for AT5G03170
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Functional Keywords
Literature and News
- Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. DOI: 10.1104/pp.010884 ; PMID: 12068095
- Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case. DOI: 10.1104/pp.003459 ; PMID: 12177459
- Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. DOI: 10.1104/pp.103.021170 ; PMID: 12805588
- The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene family of putative cell adhesion molecules. DOI: 10.1104/pp.103.031237 ; PMID: 14645732
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. DOI: 10.1105/tpc.105.031542 ; PMID: 15980264
- CINNAMYL ALCOHOL DEHYDROGENASE-C and -D are the primary genes involved in lignin biosynthesis in the floral stem of Arabidopsis. DOI: 10.1105/tpc.105.030767 ; PMID: 15937231
- AtFLA11, a fasciclin-like arabinogalactan-protein, specifically localized in sclerenchyma cells. DOI: 10.1271/bbb.69.1963 ; PMID: 16244449
- The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence. DOI: 10.1105/tpc.105.036004 ; PMID: 16214898
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium. DOI: 10.1007/s11103-006-0059-y ; PMID: 16927204
- Global comparative transcriptome analysis identifies gene network regulating secondary xylem development in Arabidopsis thaliana. DOI: 10.1007/s00438-006-0157-1 ; PMID: 16969662
- Arabidopsis MYB26/MALE STERILE35 regulates secondary thickening in the endothecium and is essential for anther dehiscence. DOI: 10.1105/tpc.106.046391 ; PMID: 17329564
- ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2007.03109.x ; PMID: 17565617
- Global identification of DELLA target genes during Arabidopsis flower development. DOI: 10.1104/pp.108.121301 ; PMID: 18502975
- CressExpress: a tool for large-scale mining of expression data from Arabidopsis. DOI: 10.1104/pp.107.115535 ; PMID: 18467456
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- AtERF38 (At2g35700), an AP2/ERF family transcription factor gene from Arabidopsis thaliana, is expressed in specific cell types of roots, stems and seeds that undergo suberization. DOI: 10.1016/j.plaphy.2008.07.003 ; PMID: 18723362
- Fasciclin-like arabinogalactan proteins: specialization for stem biomechanics and cell wall architecture in Arabidopsis and Eucalyptus. DOI: 10.1111/j.1365-313X.2010.04181.x ; PMID: 20202165
- An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development. DOI: 10.1371/journal.pone.0015481 ; PMID: 21124849
- A fasciclin-like arabinogalactan-protein (FLA) mutant of Arabidopsis thaliana, fla1, shows defects in shoot regeneration. DOI: 10.1371/journal.pone.0025154 ; PMID: 21966441
- In silico and expression analyses of fasciclin-like arabinogalactan proteins reveal functional conservation during embryo and seed development. DOI: 10.1007/s00497-019-00376-7 ; PMID: 31501923
- Fasciclin-Like Arabinogalactan-Protein 16 (FLA16) Is Required for Stem Development in Arabidopsis. DOI: 10.3389/fpls.2020.615392 ; PMID: 33362841
- FLA11 and FLA12 glycoproteins fine-tune stem secondary wall properties in response to mechanical stresses. DOI: 10.1111/nph.17898 ; PMID: 34862967
- Distinct functions of FASCILIN-LIKE ARABINOGALACTAN PROTEINS relate to domain structure. DOI: 10.1093/plphys/kiad097 ; PMID: 36797772
- Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case. DOI: 10.1104/pp.003459 ; PMID: 12177459
- Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. DOI: 10.1104/pp.103.021170 ; PMID: 12805588
- Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. DOI: 10.1105/tpc.105.031542 ; PMID: 15980264
Gene Resources
- UniProt: A0A178UN19
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UN19
- EnsemblPlants: AT5G03170.1
- Gramene: AT5G03170.1
- KEGG: ath:AT5G03170
- Orthologous matrix: IANSPWD
- ExpressionAtlas: AT5G03170
- InterPro: IPR000782, IPR036378, IPR045003
- PANTHER: PTHR32077, PTHR32077:SF65
- SUPFAM: SSF82153
- PROSITE: PS50213
- Gene3D: 2.30.180.10
- OrthoDB: A0A178UN19
- SWISS-MODEL: A0A178UN19
Sequences
cDNA Sequence
- >AT5G03170.1
ACACACAACAACTACAACAATGGCTACTTCAAGAACATTCATTTTCTCTAATCTCTTCATCTTCTTCCTCGTTATAGCCACTACTTATGGTCAGGCTCCAGCTCCAGGCCCTTCAGGTCCAACGAACATAACCGCAATCCTAGAAAAGGCTGGTCAATTCACATTGTTCATAAGACTTCTTAAAAGCACTCAAGCCTCAGACCAAATCAACACTCAGCTCAATTCTTCCTCGAGTAATGGCTTAACCGTGTTTGCCCCGACTGATAACGCCTTCAACAGCCTCAAATCCGGAACCTTAAACTCATTGTCTGACCAACAAAAAGTTCAGCTTGTTCAGTTCCATGTCTTACCTACACTCATAACCATGCCTCAGTTTCAAACCGTTAGTAACCCTTTACGCACGCAAGCTGGAGATGGCCAAAACGGTAAATTCCCTCTTAACATCACTAGCTCCGGTAACCAAGTTAACATCACCACTGGAGTTGTCAGCGCCACCGTGGCTAACTCTGTCTACAGCGATAAGCAGCTGGCCGTTTATCAGGTTGATCAAGTTTTGCTGCCATTAGCCATGTTTGGATCAAGCGTGGCTCCTGCTCCGGCCCCTGAGAAAGGCGGCTCTGTTTCAAAAGGCTCAGCTTCCGGTGGCGATGATGGAGGAGATTCTACTGATTCATCTGATGCAGAGAGGACTGGATTCGGGTTTGGGATCAGAATCACTACCGTTGCAGCCATTGCTGCTTCTTCTTCTCTGTGGATATAACTCGAGAGAGAGCTTTTCTTGAGTCTCCACATTTGGAATTTTAAGAATAACGAGAGCTTTAAGTTTTTGTTGTACTTTGAGATTGTTTTATAGATGTGTTATTACGTGTGATTGTTTTGATTAAGATTGCACACAACTTTTTTTGATG
CDS Sequence
Protein Sequence