Information report for AT5G01980
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis. DOI: 10.1104/pp.105.070508 ; PMID: 16500996
- Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. DOI: 10.1111/j.1365-313X.2006.02672.x ; PMID: 16553893
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: Q9LZN3
- EMBL: AL162508, BT021990, BT029027
- AlphaFoldDB: Q9LZN3
- EnsemblPlants: AT5G01980.1
- Gramene: AT5G01980.1
- KEGG: ath:AT5G01980
- Orthologous matrix: RRWWCPF
- ExpressionAtlas: AT5G01980
- InterPro: IPR001841, IPR013083
- PANTHER: PTHR15710, PTHR15710:SF217
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- SWISS-MODEL: Q9LZN3
- Conserved Domain Database: cd16454
Sequences
cDNA Sequence
- >AT5G01980.1
AAAAAGGAAAGAAGATGAGAAATGTCTCTCAGCTAGACAAGACCCCCATCCGTCGTCGTTGACCCCTTTCCGCCATAAAATCCCAACACCTGTTTTCTTGCATCGAAACCATCCCCTTGCCTTGTTTGCTTGGACAGATGACTCCTTGCTAGTTTTTTGAAGATCCGGCCGTATCTCTTCGACCTCAAAGCTGCCGCCTTTGGATCCGATGGAATCACAAGGACCTTCTAATGGTCATCCCATGGATATCAGCAGCAATTCAATCCCATCGTCTGCCTGTAATCTGTGCGGAAGAGTCGTTCAATCTGCTTCCGATGATCTTGAAATCTTCAGCTTATGTGTCGACTGTAAGTTTTTGTTGCTTGAAGATTTCGGCACTCCCGCGCCTCCCTTGGCTCGGCGGCAGACAATTAGGAGGAGGAGGATGAGGAGGAGGAGAAGAACAACTAGGCACGACAGCTCTGAGTCTGTCGGTGTCGGTGATCTTTCCTCCCAACAATTCACACACTTGATAAGCATTGCAAGACAAAGCCTTTCAACGGTTCAAGCTAGTGAGGATCTACGTGATGACCTGCGAACTAGCTCCCATACCACTCCAAGCGGCTCGACAAGATGGAGACTCTTCTCAGAATCTGAAAGTGATGATTTTGACAACTTTGGCGAAACCGAATCAAACGCTAGCTTTAGCCTCTACAGATTTCCCCATGCTGATAACGATACCATTTCTTTTAGTGCTTACGGTGGAGAGTCTGATGCTTCCACGGACAGGCATGCCGATATCTTTGTTCAACCAGATGACAGGAGCGACATTGACTTTGACACTGATATAGACCCGATGCGCGCTGGTCTTAACCAGTGGAACTCAGACGAAGAAGACAGGGAATGGGAGGAAGGAGCGGGTCCTTCTGGGGTTGCAGGAACACGCTATAGAAACTATTTGGCAAGTCCAAGTGAGAGCTACAGCTCCATGACTCGGTTTGATTCACCTGAGTTAGAGAGAAGCTTTCGTCAAAGAATTATAGAGAGGAGGCATTCGTTATCTCGCAACATCTTCACTGGTTTGGAGGATTTGGACTTCTCCCCCTATGCTGCAAATGTTGGGGATTATCTTGATGAGAGAGGCTTTGATGAACTGCTTGAGCAACTTGCTGAGTCTGACAATTCAAGAAGAGGTGCACCACCTGCATCTGTCTCATGCGTCAGGAATCTTCCAAGGGTTATCATTGCAGAGGAGCATGTAATGAAGGGCCTAGTTTGTGCGATCTGCAAGGAGCTTTTCTCCCTCCGCAATGAAACCACGCAGCTTCCGTGTCTACATCTATACCATGCTCATTGTATCGTACCTTGGCTGAGTGCCCGTAACTCCTGCCCACTCTGCCGTTATGAGCTCCCGACAGATGATAAAGATTACGAGGAGGGAAAGCGGAATGTGCTGGATGTGAGCGAGGATAGCTCCTCCTCTGATGATGGTACAGAATCGGGGGAAGAGGAATATGTAGAGAGAGGTGAGAGCGAGTCTGGTGTGAGCAGAGTCAGCAGAGGAAGATGGCTGTTTCTGGCTGCTGCACCAGTTGTGAGTCTGGTGGGCGTTGTGTTGGCAATGTGGCTAAGCAGCCCACACAGGAGGGGTATAGCAATCTCTCATAGCCAAAGGGAGAACAGAACCAGAAGATGGCTGCCGTTTTTCTGACTGATGCCCAGATCCGTAGGTGCCTCCAGAATCTGTATTTTTTTAAGACCCTTAAAAGATACTTGAGTTTCGTCTGCTGTTTATCGACTTGGTACTGTTTCCACACATTAGTTTTAATTGACGTTTAACTAAAGTTGTGCTGTTTGTCGCGTGTTTCAAATAATATTCTTGATATATCCAGAGAAAAAGGGAGTGCTCATTAGTTGAAAAGAGTTATAAACTAACATTTACACAGGAAAGGAAAAAAAAAAAATCAGAATTTTGGTTGGTTCAGGCACATAGGAGATGCCACTGTATTTACACAGAAGTATTGTATAGTAGCAGATGAATGTGTCAATAAGAAGAGAATTCAGAAGAGTATGTTAATGTAGAGTACCATCCATCCAGCCATTGAGAAGATGGCGAAAATGTGGACCCAGAAGAGCACAGCAGCTGATTCCCTTCCACAGCCTCTAAGGTTGGCAACAGCTCCTGAGAGCACTGATGTAGGCATTGTGTGCTGAAGGAGTAACACAAATCGGAACATCTTATCATCAGCAGGAAGGAACCCAAGTTTGTCTGCTACTGTCACGATTCCTAG
CDS Sequence
Protein Sequence