Gene Details:

• Gene ID: AT5G01410
• Gene Symbol: ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4
• Gene Name: ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, PYRIDOXINE BIOSYNTHESIS 1.3, REDUCED SUGAR RESPONSE 4
• Description: Aldolase-type TIM barrel family protein;(source:Araport11)
• TAIR Accession: locus:2179142
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G01410.1     AT5G01410.2

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009001  — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
• PO:0000013  — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
• PO:0000014  — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
• PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0008615  — acts upstream of or within — pyridoxine biosynthetic process
• GO:0042823  — involved in — pyridoxal phosphate biosynthetic process
• GO:0005737  — located in — cytoplasm
• GO:0006520  — involved in — amino acid metabolic process
• GO:0012505  — located in — endomembrane system
• GO:0010335  — acts upstream of or within — response to non-ionic osmotic stress
• GO:0042538  — acts upstream of or within — hyperosmotic salinity response
• GO:0006982  — acts upstream of or within — response to lipid hydroperoxide
• GO:0015994  — acts upstream of or within — chlorophyll metabolic process
• GO:0006520  — acts upstream of or within — amino acid metabolic process
• GO:0008615  — involved in — pyridoxine biosynthetic process
• GO:0009651  — acts upstream of or within — response to salt stress
• GO:0042819  — acts upstream of or within — vitamin B6 biosynthetic process
• GO:0042803  — enables — protein homodimerization activity
• GO:0005886  — located in — plasma membrane
• GO:0006979  — acts upstream of or within — response to oxidative stress
• GO:0005829  — located in — cytosol
• GO:0005515  — enables — protein binding

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  root ,  vascular leaf ,  flower ,  cotyledon ,  pollen ,  fruit ,  shoot system ,  vascular leaf ,  flower ,  cauline leaf ,  rosette leaf ,  fruit ,  root ,  flower ,  stem ,  cotyledon ,  guard cell

Literature:

• Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis.   DOI:  10.1073/pnas.0308044100 ;  PMID:  14739338
• Vitamin B6 biosynthesis in higher plants.   DOI:  10.1073/pnas.0506228102 ;  PMID:  16157873
• Pyridoxine is required for post-embryonic root development and tolerance to osmotic and oxidative stresses.   DOI:  10.1111/j.1365-313X.2005.02538.x ;  PMID:  16236150
• Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis.   DOI:  10.1105/tpc.105.036269 ;  PMID:  16766694
• PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis.   DOI:  10.1111/j.1365-313X.2006.02928.x ;  PMID:  17227548
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Identification of potential DREB2C targets in Arabidopsis thaliana plants overexpressing DREB2C using proteomic analysis.   DOI:  10.1007/s10059-009-0154-4 ;  PMID:  19830397
• Vitamin B6 deficient plants display increased sensitivity to high light and photo-oxidative stress.   DOI:  10.1186/1471-2229-9-130 ;  PMID:  19903353
• Complex assembly and metabolic profiling of Arabidopsis thaliana plants overexpressing vitamin B₆ biosynthesis proteins.   DOI:  10.1093/mp/ssq041 ;  PMID:  20675613
• The role of the pyridoxine (vitamin B6) biosynthesis enzyme PDX1 in ultraviolet-B radiation responses in plants.   DOI:  10.1016/j.plaphy.2011.01.003 ;  PMID:  21288732
• Recycling of pyridoxine (vitamin B6) by PUP1 in Arabidopsis.   DOI:  10.1111/tpj.12195 ;  PMID:  23551747
• and UV-A-dependent gene expression and metabolite accumulation in Arabidopsis mediated by the stress response regulator RADICAL-INDUCED CELL DEATH1?   DOI:  10.1111/pce.12341 ;  PMID:  24689869
• Consequences of a deficit in vitamin B6 biosynthesis de novo for hormone homeostasis and root development in Arabidopsis.   DOI:  10.1104/pp.114.247767 ;  PMID:  25475669
• Involvement of Pyridoxine/Pyridoxamine 5'-Phosphate Oxidase (PDX3) in Ethylene-Induced Auxin Biosynthesis in the Arabidopsis Root.   DOI:  10.14348/molcells.2018.0363 ;  PMID:  30453730
• Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.   DOI:  10.1038/s41477-019-0378-z ;  PMID:  30833711
• Anthocyanin accumulation and changes in CHS and PR-5 gene expression in Arabidopsis thaliana after removal of the inflorescence stem (decapitation).   DOI:  10.1016/j.plaphy.2005.05.004 ;  PMID:  15993620
• A reference map of the Arabidopsis thaliana mature pollen proteome.   DOI:  10.1016/j.bbrc.2005.09.185 ;  PMID:  16242667
• The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense.   DOI:  10.1104/pp.108.117523 ;  PMID:  18467450
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: