Gene Details:

• Gene ID: AT4G40040
• Gene Symbol: H3.3, HTR5
• Gene Name: histone 3.3
• Description: Histone superfamily protein;(source:Araport11)
• TAIR Accession: locus:2140025
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G40040.1     AT4G40040.2     AT4G40040.3

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009049  — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)

Gene Ontology:

• GO:0009892  — acts upstream of or within — negative regulation of metabolic process
• GO:0080111  — acts upstream of or within — DNA demethylation
• GO:0019219  — acts upstream of or within — regulation of nucleobase-containing compound metabolic process
• GO:2000241  — acts upstream of or within — regulation of reproductive process
• GO:0005634  — located in — nucleus
• GO:0010035  — acts upstream of or within — response to inorganic substance
• GO:1990188  — enables — euchromatin binding
• GO:0005634  — is active in — nucleus
• GO:0005886  — located in — plasma membrane
• GO:0000791  — located in — euchromatin

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  root ,  vascular leaf ,  flower ,  inflorescence

Literature:

• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.   DOI:  10.1111/j.1365-313X.2005.02554.x ;  PMID:  16262706
• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• Loading of Arabidopsis centromeric histone CENH3 occurs mainly during G2 and requires the presence of the histone fold domain.   DOI:  10.1105/tpc.106.043174 ;  PMID:  17028205
• Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression.   DOI:  10.1105/tpc.107.057190 ;  PMID:  18319396
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Zygotic resetting of the HISTONE 3 variant repertoire participates in epigenetic reprogramming in Arabidopsis.   DOI:  10.1016/j.cub.2010.11.012 ;  PMID:  21093266
• Differential association of Arabidopsis telomeres and centromeres with histone H3 variants.   DOI:  10.1038/srep01202 ;  PMID:  23383372
• Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.   DOI:  10.1126/science.1248357 ;  PMID:  24626927
• The H3 chaperone function of NASP is conserved in Arabidopsis.   DOI:  10.1111/tpj.13263 ;  PMID:  27402088
• Genome-wide identification, evolutionary, and expression analyses of histone H3 variants in plants.   DOI:  10.1155/2015/341598 ;  PMID:  25815311
• LHP1 Interacts with ATRX through Plant-Specific Domains at Specific Loci Targeted by PRC2.   DOI:  10.1016/j.molp.2018.05.004 ;  PMID:  29793052
• A unified phylogeny-based nomenclature for histone variants.   DOI:  10.1186/1756-8935-5-7 ;  PMID:  22650316
• Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction.   DOI:  10.1111/tpj.15145 ;  PMID:  33368779
• Potential transceptor AtNRT1.13 modulates shoot architecture and flowering time in a nitrate-dependent manner.   DOI:  10.1093/plcell/koab051 ;  PMID:  33580260
• The Histone Chaperone HIRA Is a Positive Regulator of Seed Germination.   DOI:  10.3390/ijms22084031 ;  PMID:  33919775
• The histone variant H3.3 promotes the active chromatin state to repress flowering in Arabidopsis.   DOI:  10.1093/plphys/kiab224 ;  PMID:  34618105
• Epigenetic features drastically impact CRISPR-Cas9 efficacy in plants.   DOI:  10.1093/plphys/kiac285 ;  PMID:  35689624
• Genome-wide analysis of long non-coding RNAs under diel light exhibits role in floral development and the circadian clock in Arabidopsis thaliana.   DOI:  10.1016/j.ijbiomac.2022.09.295 ;  PMID:  36257367
• Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis.   DOI:  10.1038/s41467-022-34648-0 ;  PMID:  36379930
• Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis.   DOI:  10.1111/nph.18738 ;  PMID:  36647799
• Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.   DOI:  10.1111/j.1365-313X.2005.02554.x ;  PMID:  16262706

Sequences: