Information report for AT4G39960
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0051085 — involved in — chaperone cofactor-dependent protein refolding
- GO:0005515 — enables — protein binding
- GO:0042026 — involved in — protein refolding
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0005524 — enables — ATP binding
- GO:0031072 — enables — heat shock protein binding
- GO:0005506 — enables — iron ion binding
- GO:0009408 — involved in — response to heat
- GO:0005737 — is active in — cytoplasm
- GO:0009941 — located in — chloroplast envelope
- GO:0005886 — located in — plasma membrane
- GO:0051082 — enables — unfolded protein binding
- GO:0009507 — located in — chloroplast
Functional Keywords
Literature and News
- Alanine aminotransferase homologs catalyze the glutamate:glyoxylate aminotransferase reaction in peroxisomes of Arabidopsis. DOI: 10.1104/pp.011460 ; PMID: 12529529
- The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins. DOI: 10.1105/tpc.012955 ; PMID: 12897258
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Evolution of chloroplast J proteins. DOI: 10.1371/journal.pone.0070384 ; PMID: 23894646
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. DOI: 10.1038/s41477-019-0378-z ; PMID: 30833711
- The DnaJ proteins DJA6 and DJA5 are essential for chloroplast iron-sulfur cluster biogenesis. DOI: 10.15252/embj.2020106742 ; PMID: 33855718
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: Q940V1
- EMBL: AY052658, AY063727, CP002687
- AlphaFoldDB: Q940V1
- EnsemblPlants: AT4G39960.1, AT4G39960.2
- Gramene: AT4G39960.1, AT4G39960.2
- KEGG: ath:AT4G39960
- Orthologous matrix: WGIRPQI
- ExpressionAtlas: AT4G39960
- InterPro: IPR001305, IPR001623, IPR002939
- PANTHER: PTHR43096, PTHR43096:SF42
- SUPFAM: SSF46565, SSF49493, SSF57938
- PROSITE: PS00636, PS50076, PS51188
- Gene3D: 1.10.287.110, 2.10.230.10, 2.60.260.20
- SWISS-MODEL: Q940V1
- Conserved Domain Database: cd06257, cd10719, cd10747
Sequences
cDNA Sequence
- >AT4G39960.2
GGTATGATTCAGCTTCTCTCGTTTGATTAGAGTCATCCATAGAATGTTGTTTTTCTATGTTTTCCTTCACTTGTCTTGATTTTTCCTCTAACTAAATGGTGGTGGCTCCAAGCTCGTGTTTTTACAGATTTGTTCACTCGAATTTCTTTAGAAAGCTGTGATTTTTTTCTGCTTAGTGGTTGAAGAATTCGTATGTTTCGTAATGGGTGCAAGCTTATTTGCGGTGAAAGTGAAACTCTTTTTGTCTCGGGTCGAAATTTCATGAAAATTGCATATAATCTTCTTAGGGAGTGTAATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTCGTCCTCGGTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAGACAATTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGGGCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAGCTCGCTTCACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATGTGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCTTATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTGGAATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCGAAGGAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCAGAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTTTCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTTCTGGAGCTAAAGCGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAGGTGGTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTCTCCGTGTAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTGAGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTAAGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCGGTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACGTGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGATGGAGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACATTGGTGATGGCTAAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAGTGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGGCTGATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAA - >AT4G39960.1
GGTATGATTCAGCTTCTCTCGTTTGATTAGAGTCATCCATAGAATGTTGTTTTTCTATGTTTTCCTTCACTTGTCTTGATTTTTCCTCTAACTAAATGGTGGTGGCTCCAAGCTCGTGTTTTTACAGATTTGTTCACTCGAATTTCTTTAGAAAGCTGTGATTTTTTTCTGCTTAGTGGTTGAAGAATTCGTATGTTTCGTAATGGGTGCAAGCTTATTTGCGGTGAAAGTGAAACTCTTTTTGTCTCGGGTCGAAATTTCATGAAAATTGCATATAATCTTCTTAGGGAGTGTAATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTCGTCCTCGGTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAGACAATTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGGGCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAGCTCGCTTCACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATGTGAACAAGGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCTTATCAGATGATGAGAAAAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTGGAATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCGAAGGAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCAGAGCTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTTTCGGTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGCAATGGTTCTGGAGCTAAAGCGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAGGTGGTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTCTCCGTGTAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTGAGAAGGACAAAGCGGATTAGTCTTAAAGTTCCTGCGGGTGTGGATTCTGGAAGTAGGTTAAGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCGGTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACGTGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGATGGAGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACATTGGTGATGGCTAAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAGTGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGGCTGATATGAGCAAGAACAAGGTAGCTAATAGCAGGAGATAA
CDS Sequence
Protein Sequence