Gene Details:

• Gene ID: AT4G32520
• Gene Symbol: AtSHMT3, SHM3
• Gene Name: SERINE HYDROXYMETHYLTRANSFERASE 3, serine hydroxymethyltransferase 3
• Description: serine hydroxymethyltransferase 3;(source:Araport11)
• TAIR Accession: locus:2127806
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G32520.1     AT4G32520.2

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0004372  — enables — glycine hydroxymethyltransferase activity
• GO:0070905  — enables — serine binding
• GO:0009507  — located in — chloroplast
• GO:0005737  — located in — cytoplasm
• GO:0046653  — involved in — tetrahydrofolate metabolic process
• GO:0046655  — involved in — folic acid metabolic process
• GO:0006565  — involved in — L-serine catabolic process
• GO:0030170  — enables — pyridoxal phosphate binding
• GO:0005886  — located in — plasma membrane
• GO:0006730  — involved in — one-carbon metabolic process
• GO:0009570  — located in — chloroplast stroma
• GO:0019264  — involved in — glycine biosynthetic process from serine
• GO:0009536  — located in — plastid
• GO:0005737  — is active in — cytoplasm
• GO:0035999  — involved in — tetrahydrofolate interconversion
• GO:0008270  — enables — zinc ion binding

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  guard cell

Literature:

• Integrated temporal regulation of the photorespiratory pathway. Circadian regulation of two Arabidopsis genes encoding serine hydroxymethyltransferase.   DOI:  10.1104/pp.123.1.381 ;  PMID:  10806255
• Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization.   DOI:  10.1104/pp.102.016436 ;  PMID:  12644654
• Cesium toxicity in Arabidopsis.   DOI:  10.1104/pp.104.046672 ;  PMID:  15489280
• Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.   DOI:  10.1104/pp.109.152413 ;  PMID:  20118269
• Arabidopsis thaliana serine hydroxymethyltransferases: functions, structures, and perspectives.   DOI:  10.1016/j.plaphy.2022.07.025 ;  PMID:  35947902
• Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization.   DOI:  10.1104/pp.102.016436 ;  PMID:  12644654
• Cesium toxicity in Arabidopsis.   DOI:  10.1104/pp.104.046672 ;  PMID:  15489280
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.   DOI:  10.1021/pr1009433 ;  PMID:  21166475
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.   DOI:  10.1021/pr1009433 ;  PMID:  21166475
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: