Gene Details:
- Gene ID: AT4G32460
- Gene Symbol: AthA1-1, BDX, BIIDXI
- Gene Name:
- Description: choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642);(source:Araport11)
- TAIR Accession: locus:2127831
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000263 — non-hair root epidermal cell — atrichoblast (exact), atricoblasto (Spanish, exact), 非毛根形成細胞、アトリコブラスト (Japanese, exact), non-hair cell (broad)
Gene Ontology:
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0005576 — located in — extracellular region
- GO:0030234 — enables — enzyme regulator activity
- GO:0045489 — acts upstream of or within — pectin biosynthetic process
Germplasm Phenotype:
- SALK_054867 — Heterozygotes have short siliques and reduced number of seeds. Some embryos are also abnormally shaped.
- SALK_142260 — Heterozygotes have short siliques and reduced number of seeds. Some embryos are also abnormally shaped.
- bdx-1 — Decreased thermotolerance.
Function-related keywords:
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , non-hair root epidermal cell
Literature:
- Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. DOI: 10.1104/pp.103.034736 ; PMID: 15047898
- Isolation and characterization of flower-specific transcripts in Acacia mangium. DOI: 10.1093/treephys/25.2.167 ; PMID: 15574398
- Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth. DOI: 10.1104/pp.105.060558 ; PMID: 15894741
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. DOI: 10.1186/1471-2229-8-94 ; PMID: 18796151
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- A gene regulatory network for root epidermis cell differentiation in Arabidopsis. DOI: 10.1371/journal.pgen.1002446 ; PMID: 22253603
- Cell Wall Localization of Two DUF642 Proteins, BIIDXI and TEEBE, during Meloidogyne incognita Early Inoculation. DOI: 10.5423/PPJ.NT.05.2017.0101 ; PMID: 29238286
- BIIDXI, a DUF642 Cell Wall Protein That Regulates Pectin Methyl Esterase Activity, Is Involved in Thermotolerance Processes in Arabidopsis thaliana. DOI: 10.3390/plants11223049 ; PMID: 36432778
- A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases. DOI: 10.1093/jxb/erm082 ; PMID: 17526915
- A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases. DOI: 10.1093/jxb/erm082 ; PMID: 17526915
Sequences:
cDNA Sequence
- >AT4G32460.1
AAGGGGCCTTTCTTGCACAATTTTGCATATAAGAGCTCTCTCTCCTCCTCGTTCTATTCCACTCCCACTAAACATTCCTTCTCTCGCTCACTCTTCTCCAATCCTTATTTTATTTTTTGAAAGTTTAAAATTTTATACAACATATCAATTTGGGGTAGAAAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTCCTTCACTCGTTCTTCTACGTTGCCTTTTGCTTCAATGATGGACTACTACCAAACGGTGACTTCGAACTCGGTCCACGACATTCGGACATGAAAGGAACACAAGTTATCAACATAACAGCAATCCCAAACTGGGAACTCTCAGGCTTTGTCGAGTACATTCCCTCAGGACACAAACAAGGCGACATGATCCTTGTCGTGCCTAAAGGCGCATTCGCAGTACGTCTAGGCAACGAAGCCTCAATCAAACAAAAAATCAGCGTTAAGAAAGGGTCGTACTATTCGATAACGTTCAGTGCTGCTCGAACATGCGCACAAGACGAGCGGTTAAACGTTTCCGTGGCTCCTCACCATGCAGTGATGCCGATACAAACAGTGTATAGTAGCTCAGGTTGGGATTTGTATTCGTGGGCTTTTAAGGCCCAAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTGGACCTCTCATTGATGGTGTTGCTATGCGAGCCCTTTTCCCTCCTCGTCCCACCAATAAGAACATTCTAAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTGGTGTTTTGATTCCACCAAACTCCATCGACGATCACTCTCCGTTACCTGGTTGGATGGTCGAGTCTCTTAAAGCTGTCAAATACATAGATTCCGATCATTTCTCCGTTCCTCAAGGCCGTCGCGCCGTCGAACTCGTCGCCGGGAAAGAAAGCGCCGTCGCACAAGTTGTCCGCACTATCCCTGGAAAAACCTACGTCCTATCCTTCTCTGTCGGAGATGCTAGCAACGCTTGCGCCGGATCAATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTCCCGTATGAATCGAAAGGGAAAGGAGGATTCAAGCGATCGTCATTGAGATTCGTCGCTGTCTCGAGTCGGACTAGAGTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGACGATTTCTCGAGCTTATGTGGACCGGTGATCGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGACGAGTTGATTCACGGGACAATGAATGATGACAGTCACTGTGGGTTTCTCGCGTCTAGTGAGAAATTGGGCTTTTAGGCCCAGTGGCCCACTGTTTTTGTTGTTGTTTTAAAGCTTAATGTTATTTGACAAAGAAAAAAGAAATTACTCTGGTCAATCATATCGAACCGTGAAATTTTATGATCTTGTGATTTAAGAATGTTTCTTCCTCACTGAGTGGACAAATAC - >AT4G32460.3
AAGGGGCCTTTCTTGCACAATTTTGCATATAAGAGCTCTCTCTCCTCCTCGTTCTATTCCACTCCCACTAAACATTCCTTCTCTCGCTCACTCTTCTCCAATCCTTATTTTATTTTTTGAAAGTTTAAAATTTTATACAACATATCAATTTGGGGTAGAAAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTCCTTCACTCGTTCTTCTACGTTGCCTTTTGCTTCAATGATGGACTACTACCAAACGGTGACTTCGAACTCGGTCCACGACATTCGGACATGAAAGGAACACAAGTTATCAACATAACAGCAATCCCAAACTGGGAACTCTCAGGCTTTGTCGAGTACATTCCCTCAGGACACAAACAAGGCGACATGATCCTTGTCGTGCCTAAAGGCGCATTCGCAGTACGTCTAGGCAACGAAGCCTCAATCAAACAAAAAATCAGCGTTAAGAAAGGGTCGTACTATTCGATAACGTTCAGTGCTGCTCGAACATGCGCACAAGACGAGCGGTTAAACGTTTCCGTGGCTCCTCACCATGCAGTGATGCCGATACAAACAGTGTATAGTAGCTCAGGTTGGGATTTGTATTCGTGGGCTTTTAAGGCCCAAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTGGACCTCTCATTGATGGTGTTGCTATGCGAGCCCTTTTCCCTCCTCGTCCCACCAATAAGAACATTCTAAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTGGTGTTTTGATTCCACCAAACTCCATCGACGATCACTCTCCGTTACCTGGTTGGATGGTCGAGTCTCTTAAAGCTGTCAAATACATAGATTCCGATCATTTCTCCGTTCCTCAAGGCCGTCGCGCCGTCGAACTCGTCGCCGGGAAAGAAAGCGCCGTCGCACAAGTTGTCCGCACTATCCCTGGAAAAACCTACGTCCTATCCTTCTCTGTCGGAGATGCTAGCAACGCTTGCGCCGGATCAATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTCCCGTATGAATCGAAAGGGAAAGGAGGATTCAAGCGATCGTCATTGAGATTCGTCGCTGTCTCGAGTCGGACTAGAGTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGACGATTTCTCGAGCTTATGTGGACCGGTGATCGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGACGAGTTGATTCACGGGACAATGAATGATGACAGTCACTGTGGGTTTCTCGCGTCTAGTGAGAAATTGGGCTTTTAGGCCCAGTGGCCCACTGTTTTTGTTGTTGTTTTAAAGCTTAATGTTATTTGACAAAGAAAAAAGAAATTACTCTGGTCAATCATATCGAACCGTGAAATTTTATGATCTTGTGATTTAAGAATGTTTCTTCCTCACTGAGTGGACAAATAC - >AT4G32460.4
AAGGGGCCTTTCTTGCACAATTTTGCATATAAGAGCTCTCTCTCCTCCTCGTTCTATTCCACTCCCACTAAACATTCCTTCTCTCGCTCACTCTTCTCCAATCCTTATTTTATTTTTTGAAAGTTTAAAATTTTATACAACATATCAATTTGGGGTAGAAAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTCCTTCACTCGTTCTTCTACGTTGCCTTTTGCTTCAATGATGGACTACTACCAAACGGTGACTTCGAACTCGGTCCACGACATTCGGACATGAAAGGAACACAAGTTATCAACATAACAGCAATCCCAAACTGGGAACTCTCAGGCTTTGTCGAGTACATTCCCTCAGGACACAAACAAGGCGACATGATCCTTGTCGTGCCTAAAGGCGCATTCGCAGTACGTCTAGGCAACGAAGCCTCAATCAAACAAAAAATCAGCGTTAAGAAAGGGTCGTACTATTCGATAACGTTCAGTGCTGCTCGAACATGCGCACAAGACGAGCGGTTAAACGTTTCCGTGGCTCCTCACCATGCAGTGATGCCGATACAAACAGTGTATAGTAGCTCAGGTTGGGATTTGTATTCGTGGGCTTTTAAGGCCCAAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTGGACCTCTCATTGATGGTGTTGCTATGCGAGCCCTTTTCCCTCCTCGTCCCACCAATAAGAACATTCTAAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTGGTGTTTTGATTCCACCAAACTCCATCGACGATCACTCTCCGTTACCTGGTTGGATGGTCGAGTCTCTTAAAGCTGTCAAATACATAGATTCCGATCATTTCTCCGTTCCTCAAGGCCGTCGCGCCGTCGAACTCGTCGCCGGGAAAGAAAGCGCCGTCGCACAAGTTGTCCGCACTATCCCTGGAAAAACCTACGTCCTATCCTTCTCTGTCGGAGATGCTAGCAACGCTTGCGCCGGATCAATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTCCCGTATGAATCGAAAGGGAAAGGAGGATTCAAGCGATCGTCATTGAGATTCGTCGCTGTCTCGAGTCGGACTAGAGTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGACGATTTCTCGAGCTTATGTGGACCGGTGATCGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGACGAGTTGATTCACGGGACAATGAATGATGACAGTCACTGTGGGTTTCTCGCGTCTAGTGAGAAATTGGGCTTTTAGGCCCAGTGGCCCACTGTTTTTGTTGTTGTTTTAAAGCTTAATGTTATTTGACAAAGAAAAAAGAAATTACTCTGGTCAATCATATCGAACCGTGAAATTTTATGATCTTGTGATTTAAGAATGTTTCTTCCTCACTGAGTGGACAAATAC - >AT4G32460.2
AAGGGGCCTTTCTTGCACAATTTTGCATATAAGAGCTCTCTCTCCTCCTCGTTCTATTCCACTCCCACTAAACATTCCTTCTCTCGCTCACTCTTCTCCAATCCTTATTTTATTTTTTGAAAGTTTAAAATTTTATACAACATATCAATTTGGGGTAGAAAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTCCTTCACTCGTTCTTCTACGTTGCCTTTTGCTTCAATGATGGACTACTACCAAACGGTGACTTCGAACTCGGTCCACGACATTCGGACATGAAAGGAACACAAGTTATCAACATAACAGCAATCCCAAACTGGGAACTCTCAGGCTTTGTCGAGTACATTCCCTCAGGACACAAACAAGGCGACATGATCCTTGTCGTGCCTAAAGGCGCATTCGCAGTACGTCTAGGCAACGAAGCCTCAATCAAACAAAAAATCAGCGTTAAGAAAGGGTCGTACTATTCGATAACGTTCAGTGCTGCTCGAACATGCGCACAAGACGAGCGGTTAAACGTTTCCGTGGCTCCTCACCATGCAGTGATGCCGATACAAACAGTGTATAGTAGCTCAGGTTGGGATTTGTATTCGTGGGCTTTTAAGGCCCAAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTGGACCTCTCATTGATGGTGTTGCTATGCGAGCCCTTTTCCCTCCTCGTCCCACCAATAAGAACATTCTAAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTGGTGTTTTGATTCCACCAAACTCCATCGACGATCACTCTCCGTTACCTGGTTGGATGGTCGAGTCTCTTAAAGCTGTCAAATACATAGATTCCGATCATTTCTCCGTTCCTCAAGGCCGTCGCGCCGTCGAACTCGTCGCCGGGAAAGAAAGCGCCGTCGCACAAGTTGTCCGCACTATCCCTGGAAAAACCTACGTCCTATCCTTCTCTGTCGGAGATGCTAGCAACGCTTGCGCCGGATCAATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTCCCGTATGAATCGAAAGGGAAAGGAGGATTCAAGCGATCGTCATTGAGATTCGTCGCTGTCTCGAGTCGGACTAGAGTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGACGATTTCTCGAGCTTATGTGGACCGGTGATCGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGACGAGTTGATTCACGGGACAATGAATGATGACAGTCACTGTGGGTTTCTCGCGTCTAGTGAGAAATTGGGCTTTTAGGCCCAGTGGCCCACTGTTTTTGTTGTTGTTTTAAAGCTTAATGTTATTTGACAAAGAAAAAAGAAATTACTCTGGTCAATCATATCGAACCGTGAAATTTTATGATCTTGTGATTTAAGAATGTTTCTTCCTCACTGAGTGGACAAATAC
CDS Sequence
Protein Sequence