Information report for AT4G31580
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
Literature and News
- An SC35-like protein and a novel serine/arginine-rich protein interact with Arabidopsis U1-70K protein. DOI: 10.1074/jbc.274.51.36428 ; PMID: 10593939
- A novel family of plant splicing factors with a Zn knuckle motif: examination of RNA binding and splicing activities. DOI: 10.1023/a:1006129615846 ; PMID: 10350090
- The plant U1 small nuclear ribonucleoprotein particle 70K protein interacts with two novel serine/arginine-rich proteins. DOI: 10.1105/tpc.10.10.1637 ; PMID: 9761791
- Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. DOI: 10.1091/mbc.e04-01-0055 ; PMID: 15133128
- A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions? DOI: 10.1042/BST0320561 ; PMID: 15270675
- Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences. DOI: 10.1093/nar/gkh845 ; PMID: 15452276
- Functional distribution and dynamics of Arabidopsis SR splicing factors in living plant cells. DOI: 10.1111/j.1365-313X.2004.02321.x ; PMID: 15686520
- Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants. DOI: 10.1093/molbev/msj118 ; PMID: 16520337
- Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. DOI: 10.1093/nar/gkl429 ; PMID: 16807317
- Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors. DOI: 10.1105/tpc.106.044529 ; PMID: 17114353
- Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress. DOI: 10.1093/pcp/pcm069 ; PMID: 17556373
- Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes. DOI: 10.1186/1471-2164-9-159 ; PMID: 18402682
- Enrichment of phosphoproteins and phosphopeptide derivatization identify universal stress proteins in elicitor-treated Arabidopsis. DOI: 10.1094/MPMI-21-10-1275 ; PMID: 18785823
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants. DOI: 10.1105/tpc.110.078352 ; PMID: 20884799
- Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing. DOI: 10.1371/journal.pone.0024542 ; PMID: 21935421
- CYCLIN-DEPENDENT KINASE G1 is associated with the spliceosome to regulate CALLOSE SYNTHASE5 splicing and pollen wall formation in Arabidopsis. DOI: 10.1105/tpc.112.107896 ; PMID: 23404887
- Dynamic Distribution and Interaction of the Arabidopsis SRSF1 Subfamily Splicing Factors. DOI: 10.1104/pp.15.01338 ; PMID: 26697894
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- An SC35-like protein and a novel serine/arginine-rich protein interact with Arabidopsis U1-70K protein. DOI: 10.1074/jbc.274.51.36428 ; PMID: 10593939
- Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. DOI: 10.1093/nar/gkl429 ; PMID: 16807317
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Gene Resources
- UniProt: A0A5S9XYC9
- EMBL: CACRSJ010000109, CACSHJ010000095, LR881469
- AlphaFoldDB: A0A5S9XYC9
- EnsemblPlants: AT4G31580.1, AT4G31580.2
- Gramene: AT4G31580.1, AT4G31580.2
- KEGG: ath:AT4G31580
- Orthologous matrix: HGPLNCK
- ExpressionAtlas: AT4G31580
- InterPro: IPR000504, IPR001878, IPR012677
- PANTHER: PTHR23147
- SUPFAM: SSF54928, SSF57756
- PROSITE: PS50102, PS50158
- Gene3D: 3.30.70.330, 4.10.60.10
- OrthoDB: A0A5S9XYC9
- SWISS-MODEL: A0A5S9XYC9
- Conserved Domain Database: cd12373
Sequences
cDNA Sequence
- >AT4G31580.1
ACCGACACTAACATATTATTGAAAAAAGGCATGAAAAGGCTACTTTTAAGCCCAATAAATAGGCCCAAATTGTATATTTACTAAATTTTGTTAACGCGCTTACAAAACCCTTTGGAAAGTATTTCATCAAATTTCAGATTCAGAAACCCTAATTTCTTCACAAAGCAAAACACAGAAAAAGCCATTCTTTTTGCCCCTTGAGTGCTTTCAGCTCTTCCCACAAGGTTACAGAAGTAATGTCACGTGTGTACGTCGGAAATTTGGACCCGCGAGTTACTGAGCGTGAACTTGAGGATGAGTTCCGTGCCTTTGGAGTTGTCAGGAGTGTTTGGGTTGCCCGTAGACCACCTGGTTACGCTTTTCTAGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGGCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTGAGCGTGGTGGCGGCGGTCGTGGTGGTGACCGTGGAGGTGGTGGCGGCGGCCGTGGTGGTCGTGGTGGCTCTGATTTGAAATGCTATGAATGCGGTGAGACTGGTCATTTCGCACGTGAATGCCGTAACCGTGGTGGAACTGGAAGGCGTCGCAGCAAGAGCCGTAGTCGCACTCCTCCAAGATACAGAAGGAGCCCAAGCTATGGACGGAGGAGTTACAGCCCTCGTGCAAGATCTCCCCCTCCTCCAAGGCGCCGCAGTCCTTCTCCTCCTCCTGCCCGTGGCCGCAGCTACAGTAGATCACCACCTCCATACAGAGCGCGTGAGGAAGTGCCATATGCTAATGGAAATGGACTGAAAGAAAGACGCAGAAGCAGGAGCTGAGTGAGTGATTTTGCAAGAAAACGAGTGTGTGGGAGGATACTTTGGAAGAGAAGAAGAGAGGGACTAAGGGAAGTTACTATCATCTATGAATTTCAGTAAGAGAACATGTTTTAGGTCTGCTGGGTTGGATAAAGCTTGCTACTTTTGCTTTTGGATATGAAACGTACGTAGTTGTGTATCTACCAATAGGTAAAAGAACACTTGATTCGTACCCTAGTTTCTTAAAGACATAATGTTTGATTGGAAATTCTGCTAAATGCCTAAGCGTTTCTTGTCTTTTTCCACCGTGTCGAGGTTTCTTCGGGTCTACTACTACTACTACTGCTTCATTGCTTATCTACTTGCTTCTCTACTCTTCTCATATGAAGCATCTTCCTTAGTTTCTTGGCCTACTTCATTGTTTATCTGCTTGCTTCTCTACTCTTCTGCTATGAATCATCTGCATTTAGTTGCTCGGCCTGGTATGGGAAAAGTTAAACCACGGTTGTGGATCCCTAACATCATCTTCATTTAGTTGCTCGGCCTGCTTCATTGTTTATCTACTTGCTTCTCTACTCTTCTGCTATGAATCATCTTCGTTTAGTTACTCGGCCTGCTATGGGAAAAGTTAACTACGGTTGTGGATCCCTACATGGCTTGCTTCTACTTCATCTTCGACCCTAGAGATGCGCTATTGTTTGAAAACTTCATCAGCTTTGAGGTTACCTTCTTTGCATGAACTTGAGCTGCATCACTCAGAAGCACCTCTTGTGTGGTCTGAATGTTGTGCATTAGGTTTAGCATAATTGTAGCTATGTGATAGTGTTTAGTATGCACATTCTTGTCCTTGGATAGATTTTTGTGCATTTCACGGTTTATATAGGCAAGTCAAGAATTTGTAAATGCGTATCAGTTGCTACCATTTGGTACTTGTGTTCATTTCACTTAAGCATAGTTGTGAAATTGTTCACTTTTATGAAGGTGAAGCAAAG - >AT4G31580.2
ACCGACACTAACATATTATTGAAAAAAGGCATGAAAAGGCTACTTTTAAGCCCAATAAATAGGCCCAAATTGTATATTTACTAAATTTTGTTAACGCGCTTACAAAACCCTTTGGAAAGTATTTCATCAAATTTCAGATTCAGAAACCCTAATTTCTTCACAAAGCAAAACACAGAAAAAGCCATTCTTTTTGCCCCTTGAGTGCTTTCAGCTCTTCCCACAAGGTTACAGAAGTAATGTCACGTGTGTACGTCGGAAATTTGGACCCGCGAGTTACTGAGCGTGAACTTGAGGATGAGTTCCGTGCCTTTGGAGTTGTCAGGAGTGTTTGGGTTGCCCGTAGACCACCTGGTTACGCTTTTCTAGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGGCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTGAGCGTGGTGGCGGCGGTCGTGGTGGTGACCGTGGAGGTGGTGGCGGCGGCCGTGGTGGTCGTGGTGGCTCTGATTTGAAATGCTATGAATGCGGTGAGACTGGTCATTTCGCACGTGAATGCCGTAACCGTGGTGGAACTGGAAGGCGTCGCAGCAAGAGCCGTAGTCGCACTCCTCCAAGATACAGAAGGAGCCCAAGCTATGGACGGAGGAGTTACAGCCCTCGTGCAAGATCTCCCCCTCCTCCAAGGCGCCGCAGTCCTTCTCCTCCTCCTGCCCGTGGCCGCAGCTACAGTAGATCACCACCTCCATACAGAGCGCGTGAGGAAGTGCCATATGCTAATGGAAATGGACTGAAAGAAAGACGCAGAAGCAGGAGCTGAGTGAGTGATTTTGCAAGAAAACGAGTGTGTGGGAGGATACTTTGGAAGAGAAGAAGAGAGGGACTAAGGGAAGTTACTATCATCTATGAATTTCAGTAAGAGAACATGTTTTAGGTCTGCTGGGTTGGATAAAGCTTGCTACTTTTGCTTTTGGATATGAAACGTACGTAGTTGTGTATCTACCAATAGGTAAAAGAACACTTGATTCGTACCCTAGTTTCTTAAAGACATAATGTTTGATTGGAAATTCTGCTAAATGCCTAAGCGTTTCTTGTCTTTTTCCACCGTGTCGAGGTTTCTTCGGGTCTACTACTACTACTACTGCTTCATTGCTTATCTACTTGCTTCTCTACTCTTCTCATATGAAGCATCTTCCTTAGTTTCTTGGCCTACTTCATTGTTTATCTGCTTGCTTCTCTACTCTTCTGCTATGAATCATCTGCATTTAGTTGCTCGGCCTGGTATGGGAAAAGTTAAACCACGGTTGTGGATCCCTAACATCATCTTCATTTAGTTGCTCGGCCTGCTTCATTGTTTATCTACTTGCTTCTCTACTCTTCTGCTATGAATCATCTTCGTTTAGTTACTCGGCCTGCTATGGGAAAAGTTAACTACGGTTGTGGATCCCTACATGGCTTGCTTCTACTTCATCTTCGACCCTAGAGATGCGCTATTGTTTGAAAACTTCATCAGCTTTGAGGTTACCTTCTTTGCATGAACTTGAGCTGCATCACTCAGAAGCACCTCTTGTGTGGTCTGAATGTTGTGCATTAGGTTTAGCATAATTGTAGCTATGTGATAGTGTTTAGTATGCACATTCTTGTCCTTGGATAGATTTTTGTGCATTTCACGGTTTATATAGGCAAGTCAAGAATTTGTAAATGCGTATCAGTTGCTACCATTTGGTACTTGTGTTCATTTCACTTAAGCATAGTTGTGAAATTGTTCACTTTTATGAAGGTGAAGCAAAG
CDS Sequence
Protein Sequence