Information report for AT4G30960
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- atcipk6kd — atcipk6kd exhibited cotyledons fused at the base and thick hypocotyls. Slight reduction in root length was observed in atcipk6kd seedlings 14 days after sowing. Delayed emergence of lateral roots. Decrease in shoot to root auxin transport at the apex and at the hypocotyl–root junction. Greater sensitivity to salt stress. Decreased expression of genes involved in polar auxin transport and abiotic and biotic stress
Functional Keywords
Literature and News
- The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3. DOI: 10.1073/pnas.97.7.3735 ; PMID: 10725350
- The NAF domain defines a novel protein-protein interaction module conserved in Ca2+-regulated kinases. DOI: 10.1093/emboj/20.5.1051 ; PMID: 11230129
- Interaction specificity of Arabidopsis calcineurin B-like calcium sensors and their target kinases. DOI: 10.1104/pp.124.4.1844 ; PMID: 11115898
- The Arabidopsis CDPK-SnRK superfamily of protein kinases. DOI: 10.1104/pp.102.011999 ; PMID: 12805596
- Calmodulins and calcineurin B-like proteins: calcium sensors for specific signal response coupling in plants. DOI: 10.1105/tpc.001115 ; PMID: 12045290
- Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks. DOI: 10.1104/pp.103.033068 ; PMID: 14730064
- When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. DOI: 10.1104/pp.103.033431 ; PMID: 15047901
- Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. DOI: 10.1073/pnas.0611615104 ; PMID: 17360592
- Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome. DOI: 10.1007/s11103-007-9191-6 ; PMID: 17551672
- A putative hydroxysteroid dehydrogenase involved in regulating plant growth and development. DOI: 10.1104/pp.107.100560 ; PMID: 17616511
- Role of CIPK6 in root growth and auxin transport. DOI: 10.1111/j.1365-313-X.2009.03812.x ; PMID: 19820350
- Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. DOI: 10.1016/j.phytochem.2011.02.029 ; PMID: 21477822
- BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome. DOI: 10.1093/bioinformatics/bts303 ; PMID: 22618534
- Arabidopsis CBL-interacting protein kinase (CIPK6) is involved in plant response to salt/osmotic stress and ABA. DOI: 10.1007/s11033-013-2572-9 ; PMID: 23649767
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Genome-Wide Identification and Characterization of Calcium Metabolism Related Gene Families in Arabidopsis thaliana and Their Regulation by Bacillus amyloliquefaciens Under High Calcium Stress. DOI: 10.3389/fpls.2021.707496 ; PMID: 34456948
Gene Resources
- UniProt: A0A178UTV2
- EMBL: CACRSJ010000109, CACSHJ010000095, LUHQ01000004
- AlphaFoldDB: A0A178UTV2
- EnsemblPlants: AT4G30960.1
- Gramene: AT4G30960.1
- KEGG: ath:AT4G30960
- Orthologous matrix: KVEMRFA
- ExpressionAtlas: AT4G30960
- InterPro: IPR000719, IPR004041, IPR008271
- PANTHER: PTHR43895, PTHR43895:SF91
- SUPFAM: SSF56112
- PROSITE: PS00107, PS00108, PS50011
- Gene3D: 1.10.510.10, 3.30.200.20, 3.30.310.80
- OrthoDB: A0A178UTV2
- SWISS-MODEL: A0A178UTV2
- Conserved Domain Database: cd12195
Sequences
cDNA Sequence
- >AT4G30960.1
AAACACTACTCTTTTGCTAGCTCTTATCCGACGGCAAAAGGAGAATTAAGATTTTTAACTTTAAACGAGAGTTTCGTTTATTTACTCAAAAATTTACTTCTGAAATCTCTATTTGAATTTCGGGGAAAAAAATCCTAAGTAAGGGAATGCAGAGAGATGGTCGGAGTATCGCCGGTGAAGACTAAGCTGTGTGATCGGTTTAACCGATCCGTCGGCGGCAGGAATTGCCACCGGAAACACGTCGAGGACGGGTGATCCAGTTTTCTAAACTCTCGTCTCTCGAATTCTTCGAAGATATCGAAAAACTGTAAATCTTTTTTTTCTTCTACTTTTTTACAAAATTCTCTAATCATCGTTGTAAAGTAAAAAACCATGGTCGGAGCAAAACCGGTGGAGAATGGATCTGACGGTGGTAGTAGTACGGGGCTGCTTCACGGCCGTTACGAGCTAGGGCGTCTTCTAGGTCACGGAACATTCGCGAAGGTGTACCACGCTCGTAACATACAAACCGGAAAAAGCGTGGCGATGAAAGTCGTCGGAAAAGAGAAAGTGGTGAAAGTTGGTATGGTTGATCAGATCAAACGAGAGATCTCTGTGATGAGGATGGTGAAACATCCAAACATCGTCGAGCTTCACGAAGTCATGGCGAGTAAATCCAAGATCTATTTCGCCATGGAGCTTGTACGAGGCGGTGAGTTATTCGCTAAGGTGGCTAAAGGAAGACTACGTGAAGACGTAGCTCGTGTTTATTTCCAGCAATTGATCTCAGCCGTTGATTTCTGTCATAGCCGTGGTGTTTATCACCGAGATCTGAAACCGGAGAATCTCTTGTTAGATGAAGAAGGTAATCTCAAGGTGACTGATTTTGGTCTCTCTGCTTTCACTGAGCATTTGAAACAAGACGGACTTCTTCATACAACTTGTGGAACTCCGGCTTATGTTGCGCCGGAGGTTATATTGAAGAAAGGATACGACGGAGCTAAGGCGGATCTGTGGTCTTGTGGTGTTATACTTTTTGTGCTTCTTGCTGGTTATTTGCCGTTTCAAGATGATAATCTTGTGAATATGTATAGGAAGATTTACAGAGGAGATTTCAAATGTCCTGGTTGGCTTTCTTCTGATGCTAGACGGCTTGTGACTAAGCTTCTTGATCCGAATCCGAATACGAGGATTACTATTGAGAAGGTTATGGATTCGCCTTGGTTCAAGAAACAAGCAACGAGATCAAGAAACGAACCAGTGGCTGCCACAATCACAACCACGGAAGAGGATGTTGATTTCTTGGTGCACAAGTCGAAGGAAGAGACGGAGACGTTAAACGCGTTTCATATAATCGCGTTATCGGAAGGGTTTGATTTGTCGCCGTTGTTTGAGGAGAAGAAGAAAGAGGAGAAAAGAGAGATGAGATTCGCGACGTCTCGGCCAGCGAGTAGCGTGATTTCGAGTTTGGAAGAAGCGGCGAGAGTTGGGAATAAGTTTGATGTGAGGAAGAGTGAGAGTAGAGTAAGGATTGAAGGTAAACAGAATGGTCGGAAAGGGAAATTGGCGGTGGAAGCGGAGATATTCGCGGTGGCTCCGTCGTTTGTTGTCGTGGAAGTGAAGAAAGATCATGGAGATACGCTTGAGTACAACAACTTCTGCAGTACTGCTCTTAGACCAGCTCTCAAGGACATTTTCTGGACCTCTACACCTGCTTGAATTTGATGAATTCTTGCGTGTTTCAAATTTTTATGTTGTAATATATATTGTTGGATTCTAGATTCGATTCGTGATTCTTGTTTTTGATTCTTAATGTGGTATCATAGTTTGGATCGTTCAAAAAGTTGTAAGTCTTTTGTGTGTGTTTGAGTCGTGGCCGATATGTTGCGTCACGAAGCAGAGAATGTTGTGTGTGGTGTAGAATGGTGTGTTAAAGATTCCATCATCAACAAATAATAATCATGACTCTTTTAAGAATGTTAAAGAGTCAATTTTTATGCATTCATTCTCATCAAATGTCTTTTTTTTTTTTTTTGCACGTCTCTTCTTACCTTGGATTGATTAGGACATCATCTTTGTTTATGCTGGTCCAATTTGTAGTGTCGTGTTGAATCATGTATATACTCTTCAAGATTCATGTGACTATTGTATTAACACAAGTACTTAAAAAAATTCTG
CDS Sequence
Protein Sequence