Information report for AT4G30890
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0005634 — located in — nucleus
- GO:0005634 — is active in — nucleus
- GO:0006511 — involved in — ubiquitin-dependent protein catabolic process
- GO:0004843 — enables — cysteine-type deubiquitinase activity
- GO:0016579 — involved in — protein deubiquitination
- GO:0005829 — is active in — cytosol
- CS860113 — No visible phenotype.
- SALK_061516C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:no change,oxidative stress:no change,osmotic stress:no change,salt stress:no change,ABA:increased,hypoxia:no change.
Functional Keywords
Literature and News
- The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine. DOI: 10.1104/pp.124.4.1828 ; PMID: 11115897
- Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. DOI: 10.1021/pr8000173 ; PMID: 18433157
- Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development. DOI: 10.1111/j.1365-313X.2008.03557.x ; PMID: 18485060
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Identification of novel proteins involved in plant cell-wall synthesis based on protein-protein interaction data. DOI: 10.1021/pr100249c ; PMID: 20687615
- UBIQUITIN-SPECIFIC PROTEASES function in plant development and stress responses. DOI: 10.1007/s11103-017-0633-5 ; PMID: 28695315
- Analyzing the G3BP-like gene family of Arabidopsis thaliana in early turnip mosaic virus infection. DOI: 10.1038/s41598-021-81276-7 ; PMID: 33500425
- Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. DOI: 10.1021/pr8000173 ; PMID: 18433157
- Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. DOI: 10.1021/pr8000173 ; PMID: 18433157
Gene Resources
- UniProt: A0A654FUE6
- EMBL: CACRSJ010000109, CACSHJ010000095, LR881469
- AlphaFoldDB: A0A654FUE6
- EnsemblPlants: AT4G30890.1, AT4G30890.2, AT4G30890.3
- Gramene: AT4G30890.1, AT4G30890.2, AT4G30890.3
- KEGG: ath:AT4G30890
- Orthologous matrix: INTSNTC
- ExpressionAtlas: AT4G30890
- InterPro: IPR001394, IPR018200, IPR028889
- PANTHER: PTHR24006, PTHR24006:SF687
- SUPFAM: SSF54001
- PROSITE: PS00972, PS00973, PS50235
- Gene3D: 3.90.70.10
- OrthoDB: A0A654FUE6
- SWISS-MODEL: A0A654FUE6
Sequences
cDNA Sequence
- >AT4G30890.3
GACGCCTTTGACGAAAAAGGAGACGAAGAAGATCCAAACACGGCGCTAAGCTAAGCTCCGTTCTCCTCCTCAAAACTATCCGACAAAAGACAGAAGCAGAAACCTAACCCTAATTTCCTTTTCTCAAAATCCCCGAAAGAGAAGAACAAATCCTCTCTTTCTTCTTCCTCCGTCTCTCTACCCCTTTCATGTCTTCTCAAGTCTACGACTCTCATCCAGGGTTGTTGGTGCATCAAACCCTAGTTTTTGATTTCGCTTTTGAGATTTCTCATGCTTCTTTCGTTTCGGATCTCTCTCTGAATCAGATTACGTCTTTTGGGCTCTTGTTGTTGTTGTGCTGCTCTTCAATCTCTTCTCCGTTGCGTTCTATGTGCCAAATATGAGTGAAAAGAAGGTATTTGTGTTTGGATCCTTTACAGAACATGAAACTAGGTCATTTTTTGAGCAGAAACCCACTAAGGATCCTCAGAATTCTAAAGACAAGTGTGTGGGAAGTATTCAATTTGGCTCCTTGAATCTTGCTGCGGAAAATTCTTCAGTAAATACTAATGGCGAGTTGAAGAAAGGTGAGGCTGATGGGACAGTTAAATCTGCTGGGTCTCAAGAGAGACTTGATGCTTCTAGACCTGCCAGCTCGGATAAGAACAATGATAGTGATGCAAAACTCCCAAGAAAGAACTCTTTGAGAGTTCCAGAGCATGTGGTACAAAATGGAATCATAAAAGAGATCTCTGAAAGCAACAAATCTCTCAACAATGGTGTGGCGGTGAAAACAGATCCTATTGGTTTGGATAACTTGTCTATGTCTGATGGTGAAAGTGATCCTGTGTATAAAGCTTCGAGCTCTAAATTTCAAGCGCTGGACAATGAAGATTTCTCAAGTGACTCTTCGTCTGGAAGCATTCAAAGAAAGAAAAACCTGAAGGTTCCTACTGAATCTGTTCCACCTGTTAAAGACTTTACACCAAGAGGATTAATAAACGCTGGAAACTTGTGCTTCCTGAATGCAACACTACAAGCGTTGCTTTCATGTTCTCCTTTTGTGCAGCTCCTCCAGAAAATTCAACTCCAAGATATTCCAAAGGCTGACTCTCCAACCTTAGCTGCATTTTCCGAGTTCATCTCCGAATTGGATGTGCCAAGCAGTTCCAGCATCAGAAATAACGTTACTGTTGTTGAGGCTGGTAGACCTTTTAGACCTGCCATGTTCGAAGGAGTCCTTAGAAATTTTACCCCAGATGTACTCAACAACATGTCTGGTAGGCCAAGGCAGGAAGATGCTCAAGAGTTTTTGAGTTTTATAATGGACCAAATGCATGATGAGTTGTTGAAACTCAAGGAACAGTCCCCCAAAGTCACCGCTTCTAAGTCATCGGTTATTTCTTCTGCCAACGATGATGGTGATGAATGGGAAACAGTTGGACCCAAAAACAAATCAGCTGTGACAAGAACACAAAGTTTTGTTCCGTCTGAGCTTAGTGAGATATTTGGCGGGCAGCTTAAAAGCGTAGTGAAGGCAAAAGGAACTAAAGCTTCGGCTACTGTACAGCCGTATCTCTTGCTACACCTTGATATTCATCCGGACGGTGTGCAAGGAATAGAAGACGCGTTGCATTTGTTTTCTGCCCAAGAAGATCTTGAAGGATATAGAGCCTCGGTTACTGGGAAGACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACCTAATGCGTTTTAGCTACGGAAGCCAAGGGAGTACTAAGCTGCGTAAAGGCGTTAAATTTCCCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAGAGTTTGAGATATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCCTCAAAAGGACACTACACCACAGATGCTCGACGAAAGAATGGTCAATGGCTAAGGTTTGATGATGCCTCTGTGACCCCCATAGGGACAAAACTGGTGTTGCACGATCAAGCCTATGTCCTCTTCTACAAGCAAGTGTAAGAGATTCAAAGGCAGCAGATTTCCATGGTCGGAGAAAGAAGAGTAAACTCTTTATCGGCTTGTGTCCGGTCTTCTGAGTTTAAGTCACGATGCTATAATCTGGTTCTCATCTTATATAACTTTGAAGGAGGGGGTCTCAGTAGGTAAATAGTTTTAGAGTACCTGGTTTACACTGGAAGTTTTGTTATGATTCCTTGAGATGGGTGTTTTAATCTGATTTTACTACTTCATAGACTTATTATTCGAAAATTCATGTCTTATGCTACATGTCTTCTTATCATTGGCCTAATCTTCCTTTTCATGGTTCAATCAATCAAGTAGAAGGCGATGA - >AT4G30890.2
GACGCCTTTGACGAAAAAGGAGACGAAGAAGATCCAAACACGGCGCTAAGCTAAGCTCCGTTCTCCTCCTCAAAACTATCCGACAAAAGACAGAAGCAGAAACCTAACCCTAATTTCCTTTTCTCAAAATCCCCGAAAGAGAAGAACAAATCCTCTCTTTCTTCTTCCTCCGTCTCTCTACCCCTTTCATGTCTTCTCAAGTCTACGACTCTCATCCAGGGTTGTTGGTGCATCAAACCCTAGTTTTTGATTTCGCTTTTGAGATTTCTCATGCTTCTTTCGTTTCGGATCTCTCTCTGAATCAGATTACGTCTTTTGGGCTCTTGTTGTTGTTGTGCTGCTCTTCAATCTCTTCTCCGTTGCGTTCTATGTGCCAAATATGAGTGAAAAGAAGGTATTTGTGTTTGGATCCTTTACAGAACATGAAACTAGGTCATTTTTTGAGCAGAAACCCACTAAGGATCCTCAGAATTCTAAAGACAAGTGTGTGGGAAGTATTCAATTTGGCTCCTTGAATCTTGCTGCGGAAAATTCTTCAGTAAATACTAATGGCGAGTTGAAGAAAGGTGAGGCTGATGGGACAGTTAAATCTGCTGGGTCTCAAGAGAGACTTGATGCTTCTAGACCTGCCAGCTCGGATAAGAACAATGATAGTGATGCAAAACTCCCAAGAAAGAACTCTTTGAGAGTTCCAGAGCATGTGGTACAAAATGGAATCATAAAAGAGATCTCTGAAAGCAACAAATCTCTCAACAATGGTGTGGCGGTGAAAACAGATCCTATTGGTTTGGATAACTTGTCTATGTCTGATGGTGAAAGTGATCCTGTGTATAAAGCTTCGAGCTCTAAATTTCAAGCGCTGGACAATGAAGATTTCTCAAGTGACTCTTCGTCTGGAAGCATTCAAAGAAAGAAAAACCTGAAGGTTCCTACTGAATCTGTTCCACCTGTTAAAGACTTTACACCAAGAGGATTAATAAACGCTGGAAACTTGTGCTTCCTGAATGCAACACTACAAGCGTTGCTTTCATGTTCTCCTTTTGTGCAGCTCCTCCAGAAAATTCAACTCCAAGATATTCCAAAGGCTGACTCTCCAACCTTAGCTGCATTTTCCGAGTTCATCTCCGAATTGGATGTGCCAAGCAGTTCCAGCATCAGAAATAACGTTACTGTTGTTGAGGCTGGTAGACCTTTTAGACCTGCCATGTTCGAAGGAGTCCTTAGAAATTTTACCCCAGATGTACTCAACAACATGTCTGGTAGGCCAAGGCAGGAAGATGCTCAAGAGTTTTTGAGTTTTATAATGGACCAAATGCATGATGAGTTGTTGAAACTCAAGGAACAGTCCCCCAAAGTCACCGCTTCTAAGTCATCGGTTATTTCTTCTGCCAACGATGATGGTGATGAATGGGAAACAGTTGGACCCAAAAACAAATCAGCTGTGACAAGAACACAAAGTTTTGTTCCGTCTGAGCTTAGTGAGATATTTGGCGGGCAGCTTAAAAGCGTAGTGAAGGCAAAAGGAACTAAAGCTTCGGCTACTGTACAGCCGTATCTCTTGCTACACCTTGATATTCATCCGGACGGTGTGCAAGGAATAGAAGACGCGTTGCATTTGTTTTCTGCCCAAGAAGATCTTGAAGGATATAGAGCCTCGGTTACTGGGAAGACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACCTAATGCGTTTTAGCTACGGAAGCCAAGGGAGTACTAAGCTGCGTAAAGGCGTTAAATTTCCCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAGAGTTTGAGATATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCCTCAAAAGGACACTACACCACAGATGCTCGACGAAAGAATGGTCAATGGCTAAGGTTTGATGATGCCTCTGTGACCCCCATAGGGACAAAACTGGTGTTGCACGATCAAGCCTATGTCCTCTTCTACAAGCAAGTGTAAGAGATTCAAAGGCAGCAGATTTCCATGGTCGGAGAAAGAAGAGTAAACTCTTTATCGGCTTGTGTCCGGTCTTCTGAGTTTAAGTCACGATGCTATAATCTGGTTCTCATCTTATATAACTTTGAAGGAGGGGGTCTCAGTAGGTAAATAGTTTTAGAGTACCTGGTTTACACTGGAAGTTTTGTTATGATTCCTTGAGATGGGTGTTTTAATCTGATTTTACTACTTCATAGACTTATTATTCGAAAATTCATGTCTTATGCTACATGTCTTCTTATCATTGGCCTAATCTTCCTTTTCATGGTTCAATCAATCAAGTAGAAGGCGATGA - >AT4G30890.1
GACGCCTTTGACGAAAAAGGAGACGAAGAAGATCCAAACACGGCGCTAAGCTAAGCTCCGTTCTCCTCCTCAAAACTATCCGACAAAAGACAGAAGCAGAAACCTAACCCTAATTTCCTTTTCTCAAAATCCCCGAAAGAGAAGAACAAATCCTCTCTTTCTTCTTCCTCCGTCTCTCTACCCCTTTCATGTCTTCTCAAGTCTACGACTCTCATCCAGGGTTGTTGGTGCATCAAACCCTAGTTTTTGATTTCGCTTTTGAGATTTCTCATGCTTCTTTCGTTTCGGATCTCTCTCTGAATCAGATTACGTCTTTTGGGCTCTTGTTGTTGTTGTGCTGCTCTTCAATCTCTTCTCCGTTGCGTTCTATGTGCCAAATATGAGTGAAAAGAAGGTATTTGTGTTTGGATCCTTTACAGAACATGAAACTAGGTCATTTTTTGAGCAGAAACCCACTAAGGATCCTCAGAATTCTAAAGACAAGTGTGTGGGAAGTATTCAATTTGGCTCCTTGAATCTTGCTGCGGAAAATTCTTCAGTAAATACTAATGGCGAGTTGAAGAAAGGTGAGGCTGATGGGACAGTTAAATCTGCTGGGTCTCAAGAGAGACTTGATGCTTCTAGACCTGCCAGCTCGGATAAGAACAATGATAGTGATGCAAAACTCCCAAGAAAGAACTCTTTGAGAGTTCCAGAGCATGTGGTACAAAATGGAATCATAAAAGAGATCTCTGAAAGCAACAAATCTCTCAACAATGGTGTGGCGGTGAAAACAGATCCTATTGGTTTGGATAACTTGTCTATGTCTGATGGTGAAAGTGATCCTGTGTATAAAGCTTCGAGCTCTAAATTTCAAGCGCTGGACAATGAAGATTTCTCAAGTGACTCTTCGTCTGGAAGCATTCAAAGAAAGAAAAACCTGAAGGTTCCTACTGAATCTGTTCCACCTGTTAAAGACTTTACACCAAGAGGATTAATAAACGCTGGAAACTTGTGCTTCCTGAATGCAACACTACAAGCGTTGCTTTCATGTTCTCCTTTTGTGCAGCTCCTCCAGAAAATTCAACTCCAAGATATTCCAAAGGCTGACTCTCCAACCTTAGCTGCATTTTCCGAGTTCATCTCCGAATTGGATGTGCCAAGCAGTTCCAGCATCAGAAATAACGTTACTGTTGTTGAGGCTGGTAGACCTTTTAGACCTGCCATGTTCGAAGGAGTCCTTAGAAATTTTACCCCAGATGTACTCAACAACATGTCTGGTAGGCCAAGGCAGGAAGATGCTCAAGAGTTTTTGAGTTTTATAATGGACCAAATGCATGATGAGTTGTTGAAACTCAAGGAACAGTCCCCCAAAGTCACCGCTTCTAAGTCATCGGTTATTTCTTCTGCCAACGATGATGGTGATGAATGGGAAACAGTTGGACCCAAAAACAAATCAGCTGTGACAAGAACACAAAGTTTTGTTCCGTCTGAGCTTAGTGAGATATTTGGCGGGCAGCTTAAAAGCGTAGTGAAGGCAAAAGGAACTAAAGCTTCGGCTACTGTACAGCCGTATCTCTTGCTACACCTTGATATTCATCCGGACGGTGTGCAAGGAATAGAAGACGCGTTGCATTTGTTTTCTGCCCAAGAAGATCTTGAAGGATATAGAGCCTCGGTTACTGGGAAGACTGGTGTAGTGAGTGCTAGTAAGTCGATAAAGATACAGAAACTCTCAAAGATAATGATACTGCACCTAATGCGTTTTAGCTACGGAAGCCAAGGGAGTACTAAGCTGCGTAAAGGCGTTAAATTTCCCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAGAGTTTGAGATATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCCTCAAAAGGACACTACACCACAGATGCTCGACGAAAGAATGGTCAATGGCTAAGGTTTGATGATGCCTCTGTGACCCCCATAGGGACAAAACTGGTGTTGCACGATCAAGCCTATGTCCTCTTCTACAAGCAAGTGTAAGAGATTCAAAGGCAGCAGATTTCCATGGTCGGAGAAAGAAGAGTAAACTCTTTATCGGCTTGTGTCCGGTCTTCTGAGTTTAAGTCACGATGCTATAATCTGGTTCTCATCTTATATAACTTTGAAGGAGGGGGTCTCAGTAGGTAAATAGTTTTAGAGTACCTGGTTTACACTGGAAGTTTTGTTATGATTCCTTGAGATGGGTGTTTTAATCTGATTTTACTACTTCATAGACTTATTATTCGAAAATTCATGTCTTATGCTACATGTCTTCTTATCATTGGCCTAATCTTCCTTTTCATGGTTCAATCAATCAAGTAGAAGGCGATGA
CDS Sequence
Protein Sequence