Information report for AT4G30860
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0005052 — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0000785 — located in — chromatin
- GO:0005634 — is active in — nucleus
- GO:0046975 — enables — histone H3K36 methyltransferase activity
- GO:0000785 — part of — chromatin
- GO:0005515 — enables — protein binding
Functional Keywords
Literature and News
- Cell cycle-regulated gene expression in Arabidopsis. DOI: 10.1074/jbc.M207570200 ; PMID: 12169696
- The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. DOI: 10.1093/nar/29.21.4319 ; PMID: 11691919
- Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. DOI: 10.1104/pp.102.013722 ; PMID: 12805620
- Functional hammerhead ribozymes naturally encoded in the genome of Arabidopsis thaliana. DOI: 10.1105/tpc.105.032730 ; PMID: 15937227
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen. DOI: 10.1016/j.ydbio.2007.12.016 ; PMID: 18252252
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Regulation of disease-responsive genes mediated by epigenetic factors: interaction of Arabidopsis-Pseudomonas. DOI: 10.1111/j.1364-3703.2011.00757.x ; PMID: 22023111
- A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs. DOI: 10.1016/j.ygeno.2012.05.013 ; PMID: 22664253
- SEUSS integrates transcriptional and epigenetic control of root stem cell organizer specification. DOI: 10.15252/embj.2020105047 ; PMID: 32926464
- The Arabidopsis SET-domain protein ASHR3 is involved in stamen development and interacts with the bHLH transcription factor ABORTED MICROSPORES (AMS). DOI: 10.1007/s11103-007-9251-y ; PMID: 17978851
Gene Resources
- UniProt: A0A178UX33
- EMBL: LUHQ01000004
- AlphaFoldDB: A0A178UX33
- EnsemblPlants: AT4G30860.1
- Gramene: AT4G30860.1
- KEGG: ath:AT4G30860
- Orthologous matrix: KCHCGAP
- ExpressionAtlas: AT4G30860
- InterPro: IPR001214, IPR001965, IPR003616
- PANTHER: PTHR22884
- SUPFAM: SSF82199
- PROSITE: PS50280, PS50868, PS51215
- Gene3D: 2.170.270.10, 3.30.40.10
- SWISS-MODEL: A0A178UX33
- Conserved Domain Database: cd15565, cd19175
Sequences
cDNA Sequence
- >AT4G30860.1
CATATTTTTTCATGTCTCTTCGCTTTTCGCCTACCCAACAAAGACAAAACGTAACTGTCTTCTTCTTCTTACTCTTCCATCTTTTGTACTTTCGAGTTTAGGATGTTAGATCTGGGAAACATGTCTATGTCTGCATCTGTTGCTCTCACTTGTTGCCCTTCTTTTCTTCCGGCGGCTTCAGGCCCTGAATTAGCCAAATCTATCAATTCCCCGGAAAATCTAGCCGGAGAATGCAATGGGAAACATTTACCAATGATTCCACCGGAGGAAGAGGTCAAGGACATTAAAATTGCTAATGGAGTCACTGCTTTTACCCGGAAACAGAATCCGTCTGACAGAGTCAAGAAAGGGTTTGTCTTGGATGATCATGTGAAGGATTGGGTCAAGAGAAGAGTGGCTTCTGGTGTTTCAGAGTCGACATGTTTCCTTCCTTTTCTTGTTGGTGCCAAGAAAATGGTTGATTGTCTTGTTTGCCATAAGCCGGTGTACCCGGGGGAAGACTTATCGTGTTCTGTTCGCGGCTGCCAAGGCGCTTATCACTCGCTTTGTGCGAAAGAAAGTCTTGGTTTTTCTAAGTCAAGCAAATTTAAATGCCCTCAACATGAGTGCTTTGTCTGCAAGCAAAGAACACAATGGCGGTGTGTTAAGTGTCCAATGGCTGCTCATGATAAACATTCTCCATGGTCAAAAGAAATACTTCACTTAAAAGACCAACCAGGAAGAGCAGTTTGTTGGAGGCATCCAACTGATTGGCGGCTAGACACAAAGCATGCAGTTGCACAGAGTGAGATTGAGGAAGTCTTTTGCCAGTTGCCTTTGCCATATGTGGAAGAGGAGTTTAAGATTGACTTAGCATGGAAAGATTCTGTTGTGAAGGAAGATCCGCCTTCTTATGTGCACATTAGACGCAATATTTACCTCGTTAAGAAAAAGCGTGATAATGCTAATGATGGTGTTGGGTGCACAAATTGTGGCCCTAATTGCGATAGAAGCTGTGTTTGCAGGGTTCAATGCATAAGCTGTTCAAAGGGATGCAGCTGTCCTGAAAGTTGTGGAAACAGACCATTCCGCAAAGAGAAAAAGATCAAAATTGTTAAGACTGAACATTGCGGTTGGGGAGTTGAGGCAGCAGAATCAATCAACAAAGAGGACTTCATTGTCGAATACATTGGTGAAGTGATTAGTGATGCTCAATGTGAGCAAAGGCTTTGGGATATGAAACACAAAGGCATGAAAGACTTTTACATGTGTGAGATTCAAAAAGACTTCACGATTGATGCTACCTTCAAAGGGAACGCCTCTCGGTTTCTGAACCACAGTTGCAACCCAAACTGTGTATTGGAAAAGTGGCAAGTTGAAGGTGAGACCCGTGTGGGTGTCTTTGCAGCTCGTCAAATAGAAGCAGGAGAGCCACTTACATATGACTACAGATTTGTGCAGTTTGGTCCTGAAGTAAAGTGCAATTGTGGTTCTGAAAACTGTCAAGGTTATCTTGGGACAAAGAGGAAAGAACCAAACTGTTTGGTTGTATCTTGGGGAGCAAAACGCAGAAGATTGTTTCACCGACCTATAGCCCGTAAACCGCAGCAAGATTAGCTGCAAAATATCTATAAACAATGTGCTTTGATAGTTTGTCTGTTGTCGTTATCTAGTAATCTCTGTGGAGATATAGAACCAATCGTGCTTGTAACCGAAGCTTAGGCCCACAATTGTATAACTGCTAGCTGAAGCCACGGGATAGACCGGTCGGTTATACCATACATTCTTTCAGTTCCATTACAACACAATTATTATTTAACCCTTGTCAAATTTGAATCTGATTTAAGAAAATACATTCCCTT
CDS Sequence
Protein Sequence