Gene Details:
- Gene ID: AT4G30220
- Gene Symbol: RUXF, SMFA, SmFb
- Gene Name: small nuclear ribonucleoprotein F, small nuclear ribonucleoprotein F A
- Description: small nuclear ribonucleoprotein F;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Germplasm Phenotype:
- CS69848 — Enhanced GFP fluorescence in seedling stem and shoot apex resulting from the elevated level of translatable GFP.
Function-related keywords:
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen
Literature:
- Arabidopsis CBF5 interacts with the H/ACA snoRNP assembly factor NAF1. DOI: 10.1007/s11103-007-9226-z ; PMID: 17712600
- A predicted interactome for Arabidopsis. DOI: 10.1104/pp.107.103465 ; PMID: 17675552
- Genome-wide identification and evolutionary analysis of Arabidopsis sm genes family. DOI: 10.1080/07391102.2011.10508593 ; PMID: 21142222
- A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in Arabidopsis thaliana. DOI: 10.1261/rna.060517.116 ; PMID: 28373290
- A Collection of Pre-mRNA Splicing Mutants in Arabidopsis thaliana. DOI: 10.1534/g3.119.400998 ; PMID: 32265287
- Modulation of plant development and chilling stress responses by alternative splicing events under control of the spliceosome protein SmEb in Arabidopsis. DOI: 10.1111/pce.14386 ; PMID: 35770732
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
Sequences:
cDNA Sequence
- >AT4G30220.2
ACGAATAAACCCAGCCAAAAACCCTAAATCGAGAGAAACCACAAGCGTATCGATATTTGTTCTCCCAGATCTTCGTTTCGTCTCTTCGTTCTCAAACTCATGGCGTTTGTATGTATGTGTGTTTTGCAGACTATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAGGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCTGATCAAGACTAACCTGTATTGAGTACTTAGAAATTGCAAGTCTGTGTGTTTTAATTTTTGTATTCTGTGAGCACTTTAATCTTAGTGTGATGTTGTTGAATCTTAAGAGTTTGTTGATCATATTCATACCTTAAAAAACTAACAAGCCCTTT - >AT4G30220.1
ACGAATAAACCCAGCCAAAAACCCTAAATCGAGAGAAACCACAAGCGTATCGATATTTGTTCTCCCAGATCTTCGTTTCGTCTCTTCGTTCTCAAACTCATGGCGTTTGTATGTATGTGTGTTTTGCAGACTATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATCAGGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCTGATCAAGACTAACCTGTATTGAGTACTTAGAAATTGCAAGTCTGTGTGTTTTAATTTTTGTATTCTGTGAGCACTTTAATCTTAGTGTGATGTTGTTGAATCTTAAGAGTTTGTTGATCATATTCATACCTTAAAAAACTAACAAGCCCTTT
CDS Sequence
Protein Sequence