Information report for AT4G30080
Gene Details
|
|
Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009049 — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)
- PO:0020130 — central root cap — caliptra de la raíz central (Spanish, exact), columella cells (exact), columella rootcap (exact), 中心根冠 (Japanese, exact)
- PO:0020131 — lateral root cap — caliptra lateral de la raíz (Spanish, exact), 側根冠 (Japanese, exact), peripheral cells (related)
- GO:0048829 — acts upstream of or within — root cap development
- GO:0005515 — enables — protein binding
- GO:0035198 — enables — miRNA binding
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0051301 — acts upstream of or within — cell division
- GO:0009733 — acts upstream of or within — response to auxin
- GO:0005634 — located in — nucleus
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0007389 — acts upstream of or within — pattern specification process
- CS24616 — no obvious auxin-related growth phenotype
Functional Keywords
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , root , shoot system , vascular leaf , inflorescence , central root cap , lateral root cap
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. DOI: 10.1104/pp.103.034736 ; PMID: 15047898
- Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation. DOI: 10.1111/j.1365-313X.2004.02084.x ; PMID: 15144375
- Contrasting modes of diversification in the Aux/IAA and ARF gene families. DOI: 10.1104/pp.104.039669 ; PMID: 15247399
- Interdependency of brassinosteroid and auxin signaling in Arabidopsis. DOI: 10.1371/journal.pbio.0020258 ; PMID: 15328536
- Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. DOI: 10.1105/tpc.104.028316 ; PMID: 15659631
- Antiquity of microRNAs and their targets in land plants. DOI: 10.1105/tpc.105.032185 ; PMID: 15849273
- Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1. DOI: 10.1105/tpc.105.031625 ; PMID: 15829601
- Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana. DOI: 10.1105/tpc.105.035493 ; PMID: 16243906
- Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. DOI: 10.1016/j.cell.2006.05.050 ; PMID: 16901781
- Common functions for diverse small RNAs of land plants. DOI: 10.1105/tpc.107.051706 ; PMID: 17601824
- Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. DOI: 10.1038/sj.emboj.7600659 ; PMID: 15889151
- Auxin regulates distal stem cell differentiation in Arabidopsis roots. DOI: 10.1073/pnas.1000672107 ; PMID: 20543136
- HYL1 regulates the balance between adaxial and abaxial identity for leaf flattening via miRNA-mediated pathways. DOI: 10.1093/jxb/err167 ; PMID: 21610018
- Auxin controls seed dormancy through stimulation of abscisic acid signaling by inducing ARF-mediated ABI3 activation in Arabidopsis. DOI: 10.1073/pnas.1304651110 ; PMID: 23986496
- TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. DOI: 10.1105/tpc.114.127993 ; PMID: 25052716
- Precise control of plant stem cell activity through parallel regulatory inputs. DOI: 10.1242/dev.110148 ; PMID: 25256342
- Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana. DOI: 10.1007/s11103-015-0395-x ; PMID: 26496910
- Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination. DOI: 10.1111/tpj.13086 ; PMID: 26611158
- Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana. DOI: 10.1111/tpj.13211 ; PMID: 27189514
- Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. DOI: 10.1007/s00299-017-2114-3 ; PMID: 28255787
- miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. DOI: 10.3389/fpls.2017.02024 ; PMID: 29321785
- MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. DOI: 10.3389/fpls.2018.00068 ; PMID: 29449855
- Direct and indirect targets of the arabidopsis seed transcription factor ABSCISIC ACID INSENSITIVE3. DOI: 10.1111/tpj.14854 ; PMID: 32445409
- ABI3 mediated repression of RAV1 gene expression promotes efficient dehydration stress response in Arabidopsis thaliana. DOI: 10.1016/j.bbagrm.2020.194582 ; PMID: 32442719
- MiR160 and its target genes ARF10, ARF16 and ARF17 modulate hypocotyl elongation in a light, BRZ, or PAC-dependent manner in Arabidopsis: miR160 promotes hypocotyl elongation. DOI: 10.1016/j.plantsci.2020.110686 ; PMID: 33487334
- Auxin contributes to jasmonate-mediated regulation of abscisic acid signaling during seed germination in Arabidopsis. DOI: 10.1093/plcell/koac362 ; PMID: 36516412
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. DOI: 10.1105/tpc.105.031716 ; PMID: 15829600
- Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. DOI: 10.1105/tpc.105.033076 ; PMID: 16006581
Gene Resources
Sequences
cDNA Sequence
- >AT4G30080.1
AAGCTCTTTCCTTCATATATACGAACCCCTTTTTCCATTTTCTTTGTGCAAAAAGTGTAACCTTCCTTATCCGATTCTGAAGCAGAAATTAGCTGCAGAATCTTCAGATTCTCTCTATACCTAGATTGGTTTTTCACAGAATCTTCGCTATTTTGTTCAGATCTGCCACTGTTTCAGCAAAAACGGTCACAAAAAATATGATAAATGTGATGAATCCAATGAAAGGTGGAACAGAGAAAGGTTTAGATCCTCAGCTATGGCATGCATGTGCTGGTGGTATGGTTCGTATGCCTCCTATGAACTCTAAAGTCTTTTACTTTCCTCAAGGTCACGCCGAAAACGCTTACGATTGTGTCGATTTCGGTAATCTCCCTATTCCTCCCATGGTTTTGTGTCGTGTTTTAGCCATTAAGTATATGGCTGATGCTGAATCTGACGAGGTTTTCGCTAAACTGAGATTGATTCCTTTGAAAGATGATGAGTATGTTGATCACGAGTATGGTGATGGTGAAGATAGTAACGGTTTCGAGAGTAATAGTGAGAAAACGCCTTCGTTTGCTAAGACTTTGACTCAGTCTGATGCTAATAACGGTGGGGGTTTCTCTGTTCCTCGTTATTGCGCTGAGACGATTTTCCCGAGGTTGGATTATAACGCCGAGCCGCCGGTTCAGACCATTCTTGCTAAGGATGTTCATGGTGATGTTTGGAAGTTCAGACATATTTATAGAGGGACGCCTCGGCGTCACCTTCTTACAACCGGATGGAGTAATTTTGTAAACCAGAAGAAGCTTGTGGCGGGAGATTCGATTGTCTTCATGAGAGCGGAGAATGGAGATCTTTGTGTAGGTATTAGGAGGGCTAAGAGAGGAGGGATAGGTAATGGACCCGAATATTCAGCGGGTTGGAATCCGATCGGTGGAAGTTGCGGCTACTCTTCTCTGTTAAGGGAAGATGAAAGCAATAGTTTGAGGAGAAGTAATTGTTCCCTTGCGGATAGGAAGGGGAAAGTGACGGCTGAATCTGTTATAGAAGCAGCCACTCTTGCTATTAGCGGAAGACCGTTTGAGGTTGTGTACTATCCGAGAGCTAGCACTTCAGAGTTTTGTGTCAAGGCATTAGATGCTCGAGCTGCCATGCGGATTCCGTGGTGCTCAGGTATGAGGTTTAAGATGGCTTTTGAGACAGAGGATTCGTCTCGGATAAGTTGGTTTATGGGGACTGTTTCAGCTGTTAATGTCTCTGATCCTATCCGTTGGCCTAACTCTCCTTGGCGGCTTCTACAGGTGGCGTGGGATGAGCCAGATTTACTCCAAAACGTGAAGCGAGTTAACCCGTGGTTGGTGGAATTGGTATCAAACGTACATCCGATCCCGCTTACTTCGTTTTCGCCACCGAGGAAAAAGATGCGGCTACCTCAGCATCCAGATTACAACAATCTGATCAATTCGATTCCAGTACCTTCATTCCCAAGCAATCCCCTTATTAGATCAAGCCCGTTAAGCTCTGTTCTGGACAATGTTCCCGTGGGTTTACAGGGAGCCAGGCATAATGCTCATCAGTACTACGGGTTATCATCTTCGGATCTTCACCATTACTACTTGAATAGACCACCTCCTCCTCCTCCTCCATCCTCTCTCCAACTTTCTCCTTCTCTCGGTCTCCGAAACATCGATACCAAAAACGAAAAAGGATTTTGCTTTTTGACAATGGGAACAACACCATGCAATGATACCAAATCTAAAAAGTCCCATATTGTATTGTTCGGCAAGCTTATACTACCCGAGGAACAGCTATCAGAAAAAGGCTCAACGGATACCGCAAACATAGAGAAAACGCAGATTTCATCAGGCGGGTCGAACCAAAACGGCGTTGCGGGAAGGGAGTTTTCTTCGTCAGATGAAGGATCACCTTGCTCTAAGAAAGTTCATGATGCATCAGGTTTGGAAACAGGGCATTGTAAAGTGTTTATGGAGTCAGACGATGTAGGTCGAACCTTAGACCTATCGGTTCTTGGTTCATACGAAGAATTGAGTCGGAAACTCTCTGACATGTTTGGAATCAAAAAGTCTGAGATGTTAAGCTCTGTTCTCTATAGGGATGCATCAGGAGCCATCAAATACGCAGGAAACGAACCTTTCAGTGAGTTCTTGAAGACAGCTCGAAGATTGACAATTCTGACGGAACAAGGAAGTGAGAGCGTTGTAGTATAACTTGGCAGAGTGTTTTGTTGGAGCTTGGAAGTCAAAACTCAACGATTGAATCTTTTAAGTTTTTTTTTTCTTTTATTTGTTTATTTTAGTTCCACTTTTTTGGATTATGTAAGTTTCAAAATGCAATTCACAATCTATTTGCAAATAAAATAGGTTCTTCTTCCCTTGAAAAGCTTCATTGATCAAATAGGGTATAAGAACCAAAGTCTAGACGGCAAATTATGATATGTTTGTCAAAGTCACTTCAATTTGTCTACAAATTAGTGATGACACGCATAAACCAATAGGCCTCAAACATGGTTGC
CDS Sequence
Protein Sequence